0 nestedRepeats,237 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1269 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 mrna,421 transMapEnsemblV5,224 transMapEnsemblV5,358 transMapEstV5,193 transMapEstV5,327 transMapRefSeqV5,193 transMapRefSeqV5,327 transMapRnaV5,193 transMapRnaV5,327 transMapV5,299 transMapV5,433 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 transMapV5,109 1 HLTOGAannotvHg38v1,239 augustusGene,310 chainHg19,385 chainHg19,516 chainHg19,706 chainHg19,1105 chainMm39,385 chainMm39,516 chainMm39,706 chainMm39,1105 chainNetHg19,387 chainNetHg19,518 chainNetHg19,708 chainNetHg19,1107 chainNetMm39,388 chainNetMm39,519 chainNetMm39,709 chainNetMm39,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 genscan,227 mrna,505 netHg19,385 netHg19,516 netHg19,706 netHg19,1105 netMm39,385 netMm39,516 netMm39,706 netMm39,1105 refSeqComposite,1812 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,384 1.0 transMapEnsemblV5,366 transMapEstV5,335 transMapRefSeqV5,335 transMapRnaV5,335 transMapV5,441 10 uniprot,1928 100 augustusGene,134 chainHg19,1073 chainMm39,1073 chainNetHg19,1075 chainNetMm39,1076 gap,136 microsat,70 nestedRepeats,230 netHg19,1073 netMm39,1073 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainHg19,745 chainMm39,745 chainNetHg19,747 chainNetMm39,748 nestedRepeats,238 netHg19,745 netMm39,745 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,1824 103-7 chainHg19,1106 chainMm39,1106 chainNetHg19,1108 chainNetMm39,1109 netHg19,1106 netMm39,1106 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainHg19,702 chainHg19,709 chainMm39,702 chainMm39,709 chainNetHg19,704 chainNetHg19,711 chainNetMm39,705 chainNetMm39,712 netHg19,702 netHg19,709 netMm39,702 netMm39,709 111 chainHg19,704 chainHg19,710 chainMm39,704 chainMm39,710 chainNetHg19,706 chainNetHg19,712 chainNetMm39,707 chainNetMm39,713 netHg19,704 netHg19,710 netMm39,704 netMm39,710 11484-9 chainHg19,1075 chainMm39,1075 chainNetHg19,1077 chainNetMm39,1078 netHg19,1075 netMm39,1075 115-26 chainHg19,1037 chainMm39,1037 chainNetHg19,1039 chainNetMm39,1040 netHg19,1037 netMm39,1037 117900 chainHg19,726 chainHg19,738 chainMm39,726 chainMm39,738 chainNetHg19,728 chainNetHg19,740 chainNetMm39,729 chainNetMm39,741 netHg19,726 netHg19,738 netMm39,726 netMm39,738 118300 chainHg19,750 chainMm39,750 chainNetHg19,752 chainNetMm39,753 netHg19,750 netMm39,750 11928468 chainHg19,1039 chainMm39,1039 chainNetHg19,1041 chainNetMm39,1042 netHg19,1039 netMm39,1039 11932250 mrna,529 refSeqComposite,1742 xenoRefGene,314 12 mrna,525 refSeqComposite,1738 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 xenoRefGene,310 12111 chainHg19,712 chainMm39,712 chainNetHg19,714 chainNetMm39,715 netHg19,712 netMm39,712 122 gap,132 12529312 chainHg19,1108 chainMm39,1108 chainNetHg19,1110 chainNetMm39,1111 netHg19,1108 netMm39,1108 127-163 genscan,206 13 chainHg19,1104 chainMm39,1104 chainNetHg19,1106 chainNetMm39,1107 netHg19,1104 netMm39,1104 1300 chainHg19,746 chainMm39,746 chainNetHg19,748 chainNetMm39,749 netHg19,746 netMm39,746 132 gold,152 134-41 windowmaskerSdust,112 14500911 chainHg19,1077 chainMm39,1077 chainNetHg19,1079 chainNetMm39,1080 netHg19,1077 netMm39,1077 14534192 augustusGene,340 14681350 mrna,511 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1241 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 15108278 uniprot,2051 152111 chainHg19,715 chainMm39,715 chainNetHg19,717 chainNetMm39,718 netHg19,715 netMm39,715 15608248 refSeqComposite,1818 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 1763-73 transMapEnsemblV5,749 transMapEstV5,718 transMapRefSeqV5,718 transMapRnaV5,718 transMapV5,824 17989246 transMapEnsemblV5,751 transMapEstV5,720 transMapRefSeqV5,720 transMapRnaV5,720 transMapV5,826 18085818 transMapEnsemblV5,817 transMapEstV5,786 transMapRefSeqV5,786 transMapRnaV5,786 transMapV5,892 18218656 augustusGene,315 transMapEnsemblV5,783 transMapEstV5,752 transMapRefSeqV5,752 transMapRnaV5,752 transMapV5,858 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainHg19,419 chainHg19,424 chainHg19,707 chainMm39,419 chainMm39,424 chainMm39,707 chainNetHg19,421 chainNetHg19,426 chainNetHg19,709 chainNetMm39,422 chainNetMm39,427 chainNetMm39,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netHg19,419 netHg19,424 netHg19,707 netMm39,419 netMm39,424 netMm39,707 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 2.0 HLTOGAannotvHg38v1,103 20 chainHg19,1074 chainMm39,1074 chainNetHg19,1076 chainNetMm39,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netHg19,1074 netMm39,1074 transMapEnsemblV5,374 transMapEstV5,343 transMapRefSeqV5,343 transMapRnaV5,343 transMapV5,449 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainHg19,1036 chainMm39,1036 chainNetHg19,1038 chainNetMm39,1039 mrna,523 netHg19,1036 netMm39,1036 refSeqComposite,1736 xenoRefGene,308 2003 augustusGene,333 chainHg19,1070 chainHg19,1102 chainMm39,1070 chainMm39,1102 chainNetHg19,1072 chainNetHg19,1104 chainNetMm39,1073 chainNetMm39,1105 netHg19,1070 netHg19,1102 netMm39,1070 netMm39,1102 2004 mrna,503 uniprot,2045 2005 refSeqComposite,1810 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainHg19,1009 chainMm39,1009 chainNetHg19,1011 chainNetMm39,1012 netHg19,1009 netMm39,1009 transMapEnsemblV5,745 transMapEnsemblV5,811 transMapEstV5,714 transMapEstV5,780 transMapRefSeqV5,714 transMapRefSeqV5,780 transMapRnaV5,714 transMapRnaV5,780 transMapV5,820 transMapV5,886 2008 augustusGene,308 transMapEnsemblV5,776 transMapEstV5,745 transMapRefSeqV5,745 transMapRnaV5,745 transMapV5,851 2009 chainHg19,5 chainHg19,67 chainHg19,301 chainNetHg19,5 chainNetHg19,69 chainNetHg19,303 chainNetHg19Viewchain,4 chainNetHg19Viewnet,4 netHg19,5 netHg19,67 netHg19,301 2012 gap,16 gold,18 uniprot,2000 2013 mrna,478 2014 refSeqComposite,1777 xenoRefGene,349 2020 chainMm39,5 chainMm39,67 chainMm39,301 chainNetMm39,6 chainNetMm39,70 chainNetMm39,304 chainNetMm39Viewchain,4 chainNetMm39Viewnet,4 netMm39,5 netMm39,67 netMm39,301 2022_03 uniprot,1911 2023 HLTOGAannotvHg38v1,365 uniprot,1191 2111 chainHg19,711 chainMm39,711 chainNetHg19,713 chainNetMm39,714 netHg19,711 netMm39,711 217900 chainHg19,727 chainHg19,739 chainMm39,727 chainMm39,739 chainNetHg19,729 chainNetHg19,741 chainNetMm39,730 chainNetMm39,742 netHg19,727 netHg19,739 netMm39,727 netMm39,739 218300 chainHg19,751 chainMm39,751 chainNetHg19,753 chainNetMm39,754 netHg19,751 netMm39,751 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,716 transMapEstV5,685 transMapRefSeqV5,685 transMapRnaV5,685 transMapV5,791 22900 chainHg19,724 chainHg19,736 chainMm39,724 chainMm39,736 chainNetHg19,726 chainNetHg19,738 chainNetMm39,727 chainNetMm39,739 netHg19,724 netHg19,736 netMm39,724 netMm39,736 23 uniprot,2047 23193287 mrna,485 23300 chainHg19,748 chainMm39,748 chainNetHg19,750 chainNetMm39,751 netHg19,748 netMm39,748 24 augustusGene,311 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 24259432 refSeqComposite,1784 xenoRefGene,356 25 genscan,225 transMapV5,112 xenoRefGene,268 252111 chainHg19,716 chainMm39,716 chainNetHg19,718 chainNetMm39,719 netHg19,716 netMm39,716 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 28 HLTOGAannotvHg38v1,367 2900 chainHg19,723 chainHg19,735 chainMm39,723 chainMm39,735 chainNetHg19,725 chainNetHg19,737 chainNetMm39,726 chainNetMm39,738 netHg19,723 netHg19,735 netMm39,723 netMm39,735 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainHg19,431 chainHg19,708 chainMm39,431 chainMm39,708 chainNetHg19,433 chainNetHg19,710 chainNetMm39,434 chainNetMm39,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 microsat,68 netHg19,431 netHg19,708 netMm39,431 netMm39,708 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainHg19,1072 chainMm39,1072 chainNetHg19,1074 chainNetMm39,1075 netHg19,1072 netMm39,1072 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainHg19,680 chainMm39,680 chainNetHg19,682 chainNetMm39,683 netHg19,680 netMm39,680 317900 chainHg19,728 chainHg19,740 chainMm39,728 chainMm39,740 chainNetHg19,730 chainNetHg19,742 chainNetMm39,731 chainNetMm39,743 netHg19,728 netHg19,740 netMm39,728 netMm39,740 318300 chainHg19,752 chainMm39,752 chainNetHg19,754 chainNetMm39,755 netHg19,752 netMm39,752 32 mrna,506 32111 chainHg19,713 chainMm39,713 chainNetHg19,715 chainNetMm39,716 netHg19,713 netMm39,713 33 refSeqComposite,1813 xenoRefGene,385 3300 chainHg19,747 chainMm39,747 chainNetHg19,749 chainNetMm39,750 netHg19,747 netMm39,747 34990190 refSeqComposite,1555 350 chainHg19,718 chainHg19,730 chainMm39,718 chainMm39,730 chainNetHg19,720 chainNetHg19,732 chainNetMm39,721 chainNetMm39,733 netHg19,718 netHg19,730 netMm39,718 netMm39,730 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1557 37104600 HLTOGAannotvHg38v1,372 380 HLTOGAannotvHg38v1,368 4 mrna,526 refSeqComposite,1739 xenoRefGene,311 40 gap,137 uniprot,2002 400 transMapV5,108 41 mrna,480 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1779 xenoRefGene,351 425 chainHg19,719 chainHg19,731 chainMm39,719 chainMm39,731 chainNetHg19,721 chainNetHg19,733 chainNetMm39,722 chainNetMm39,734 netHg19,719 netHg19,731 netMm39,719 netMm39,731 45 refSeqComposite,941 450 chainHg19,720 chainHg19,732 chainMm39,720 chainMm39,732 chainNetHg19,722 chainNetHg19,734 chainNetMm39,723 chainNetMm39,735 netHg19,720 netHg19,732 netMm39,720 netMm39,732 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 transMapEnsemblV5,9 transMapEnsemblV5,780 transMapEstV5,7 transMapEstV5,749 transMapRefSeqV5,8 transMapRefSeqV5,749 transMapRnaV5,8 transMapRnaV5,749 transMapV5,6 transMapV5,855 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 HLTOGAannotvHg38v1,167 HLTOGAannotvHg38v1,214 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 542 gap,133 573-80 microsat,133 simpleRepeat,93 57900 chainHg19,725 chainHg19,737 chainMm39,725 chainMm39,737 chainNetHg19,727 chainNetHg19,739 chainNetMm39,728 chainNetMm39,740 netHg19,725 netHg19,737 netMm39,725 netMm39,737 58300 chainHg19,749 chainMm39,749 chainNetHg19,751 chainNetMm39,752 netHg19,749 netMm39,749 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainHg19,721 chainHg19,733 chainMm39,721 chainMm39,733 chainNetHg19,723 chainNetHg19,735 chainNetMm39,724 chainNetMm39,736 netHg19,721 netHg19,733 netMm39,721 netMm39,733 637-44 augustusGene,313 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 656-64 mrna,527 refSeqComposite,1740 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 6643 HLTOGAannotvHg38v1,369 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 72111 chainHg19,714 chainMm39,714 chainNetHg19,716 chainNetMm39,717 netHg19,714 netMm39,714 743-8 nestedRepeats,414 rmsk,437 750 chainHg19,742 chainMm39,742 chainNetHg19,744 chainNetMm39,745 netHg19,742 netMm39,742 78-94 genscan,228 80 HLTOGAannotvHg38v1,145 HLTOGAannotvHg38v1,179 HLTOGAannotvHg38v1,226 HLTOGAannotvHg38v1,245 825 chainHg19,743 chainMm39,743 chainNetHg19,745 chainNetMm39,746 netHg19,743 netMm39,743 850 chainHg19,744 chainMm39,744 chainNetHg19,746 chainNetMm39,747 netHg19,744 netMm39,744 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainHg19,722 chainHg19,734 chainMm39,722 chainMm39,734 chainNetHg19,724 chainNetHg19,736 chainNetMm39,725 chainNetMm39,737 netHg19,722 netHg19,734 netMm39,722 netMm39,734 9149143 genscan,230 928 gap,138 93 uniprot,1483 96 mrna,428 refSeqComposite,1276 961 gold,153 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a HLTOGAannotvHg38v1,25 HLTOGAannotvHg38v1,46 HLTOGAannotvHg38v1,50 HLTOGAannotvHg38v1,62 HLTOGAannotvHg38v1,74 HLTOGAannotvHg38v1,116 HLTOGAannotvHg38v1,138 HLTOGAannotvHg38v1,268 HLTOGAannotvHg38v1,291 HLTOGAannotvHg38v1,296 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainHg19,75 chainHg19,144 chainHg19,196 chainHg19,451 chainHg19,461 chainHg19,465 chainHg19,532 chainHg19,549 chainHg19,552 chainHg19,618 chainHg19,623 chainHg19,628 chainHg19,632 chainHg19,643 chainHg19,675 chainHg19,794 chainHg19,808 chainHg19,814 chainHg19,820 chainHg19,824 chainHg19,827 chainHg19,855 chainHg19,1045 chainHg19,1069 chainHg19,1085 chainMm39,75 chainMm39,144 chainMm39,196 chainMm39,451 chainMm39,461 chainMm39,465 chainMm39,532 chainMm39,549 chainMm39,552 chainMm39,618 chainMm39,623 chainMm39,628 chainMm39,632 chainMm39,643 chainMm39,675 chainMm39,794 chainMm39,808 chainMm39,814 chainMm39,820 chainMm39,824 chainMm39,827 chainMm39,855 chainMm39,1045 chainMm39,1069 chainMm39,1085 chainNetHg19,77 chainNetHg19,146 chainNetHg19,198 chainNetHg19,453 chainNetHg19,463 chainNetHg19,467 chainNetHg19,534 chainNetHg19,551 chainNetHg19,554 chainNetHg19,620 chainNetHg19,625 chainNetHg19,630 chainNetHg19,634 chainNetHg19,645 chainNetHg19,677 chainNetHg19,796 chainNetHg19,810 chainNetHg19,816 chainNetHg19,822 chainNetHg19,826 chainNetHg19,829 chainNetHg19,857 chainNetHg19,1047 chainNetHg19,1071 chainNetHg19,1087 chainNetMm39,78 chainNetMm39,147 chainNetMm39,199 chainNetMm39,454 chainNetMm39,464 chainNetMm39,468 chainNetMm39,535 chainNetMm39,552 chainNetMm39,555 chainNetMm39,621 chainNetMm39,626 chainNetMm39,631 chainNetMm39,635 chainNetMm39,646 chainNetMm39,678 chainNetMm39,797 chainNetMm39,811 chainNetMm39,817 chainNetMm39,823 chainNetMm39,827 chainNetMm39,830 chainNetMm39,858 chainNetMm39,1048 chainNetMm39,1072 chainNetMm39,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netHg19,75 netHg19,144 netHg19,196 netHg19,451 netHg19,461 netHg19,465 netHg19,532 netHg19,549 netHg19,552 netHg19,618 netHg19,623 netHg19,628 netHg19,632 netHg19,643 netHg19,675 netHg19,794 netHg19,808 netHg19,814 netHg19,820 netHg19,824 netHg19,827 netHg19,855 netHg19,1045 netHg19,1069 netHg19,1085 netMm39,75 netMm39,144 netMm39,196 netMm39,451 netMm39,461 netMm39,465 netMm39,532 netMm39,549 netMm39,552 netMm39,618 netMm39,623 netMm39,628 netMm39,632 netMm39,643 netMm39,675 netMm39,794 netMm39,808 netMm39,814 netMm39,820 netMm39,824 netMm39,827 netMm39,855 netMm39,1045 netMm39,1069 netMm39,1085 refSeqComposite,147 refSeqComposite,158 refSeqComposite,295 refSeqComposite,310 refSeqComposite,529 refSeqComposite,642 refSeqComposite,790 refSeqComposite,1052 refSeqComposite,1245 refSeqComposite,1264 refSeqComposite,1517 refSeqComposite,1536 refSeqComposite,1562 refSeqComposite,1651 refSeqComposite,1754 refSeqComposite,1797 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,115 transMapEnsemblV5,205 transMapEnsemblV5,318 transMapEnsemblV5,353 transMapEnsemblV5,397 transMapEnsemblV5,423 transMapEnsemblV5,476 transMapEnsemblV5,546 transMapEnsemblV5,625 transMapEnsemblV5,653 transMapEnsemblV5,712 transMapEstV5,52 transMapEstV5,84 transMapEstV5,174 transMapEstV5,287 transMapEstV5,322 transMapEstV5,366 transMapEstV5,392 transMapEstV5,445 transMapEstV5,515 transMapEstV5,594 transMapEstV5,622 transMapEstV5,681 transMapRefSeqV5,52 transMapRefSeqV5,84 transMapRefSeqV5,174 transMapRefSeqV5,287 transMapRefSeqV5,322 transMapRefSeqV5,366 transMapRefSeqV5,392 transMapRefSeqV5,445 transMapRefSeqV5,515 transMapRefSeqV5,594 transMapRefSeqV5,622 transMapRefSeqV5,681 transMapRnaV5,52 transMapRnaV5,84 transMapRnaV5,174 transMapRnaV5,287 transMapRnaV5,322 transMapRnaV5,366 transMapRnaV5,392 transMapRnaV5,445 transMapRnaV5,515 transMapRnaV5,594 transMapRnaV5,622 transMapRnaV5,681 transMapV5,53 transMapV5,190 transMapV5,280 transMapV5,393 transMapV5,428 transMapV5,472 transMapV5,498 transMapV5,551 transMapV5,621 transMapV5,700 transMapV5,728 transMapV5,787 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainHg19,668 chainMm39,668 chainNetHg19,670 chainNetMm39,671 netHg19,668 netMm39,668 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainHg19,581 chainMm39,581 chainNetHg19,583 chainNetMm39,584 netHg19,581 netMm39,581 about HLTOGAannotvHg38v1,301 chainHg19,457 chainHg19,470 chainHg19,844 chainMm39,457 chainMm39,470 chainMm39,844 chainNetHg19,459 chainNetHg19,472 chainNetHg19,846 chainNetMm39,460 chainNetMm39,473 chainNetMm39,847 gap,35 genscan,127 gold,37 microsat,98 mrna,348 netHg19,457 netHg19,470 netHg19,844 netMm39,457 netMm39,470 netMm39,844 refSeqComposite,95 refSeqComposite,850 refSeqComposite,1185 refSeqComposite,1380 refSeqComposite,1459 simpleRepeat,59 transMapEnsemblV5,132 transMapEstV5,101 transMapRefSeqV5,101 transMapRnaV5,101 transMapV5,207 xenoRefGene,176 above chainHg19,529 chainHg19,541 chainHg19,561 chainMm39,529 chainMm39,541 chainMm39,561 chainNetHg19,531 chainNetHg19,543 chainNetHg19,563 chainNetMm39,532 chainNetMm39,544 chainNetMm39,564 nestedRepeats,218 netHg19,529 netHg19,541 netHg19,561 netMm39,529 netMm39,541 netMm39,561 uniprot,1525 abundance chainHg19,178 chainMm39,178 chainNetHg19,180 chainNetMm39,181 netHg19,178 netMm39,178 acad chainHg19,1065 chainMm39,1065 chainNetHg19,1067 chainNetMm39,1068 netHg19,1065 netMm39,1065 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 refSeqComposite,1286 refSeqComposite,1350 refSeqComposite,1440 refSeqComposite,1649 transMapEnsemblV5,516 transMapEnsemblV5,575 transMapEstV5,485 transMapEstV5,544 transMapRefSeqV5,485 transMapRefSeqV5,544 transMapRnaV5,485 transMapRnaV5,544 transMapV5,591 transMapV5,650 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1295 refSeqComposite,1318 transMapEnsemblV5,525 transMapEstV5,494 transMapRefSeqV5,494 transMapRnaV5,494 transMapV5,600 accesses refSeqComposite,1623 accessing refSeqComposite,1381 transMapEnsemblV5,568 transMapEstV5,537 transMapRefSeqV5,537 transMapRnaV5,537 transMapV5,643 accession refSeqComposite,777 refSeqComposite,802 ucscToINSDC,2 ucscToINSDC,23 xenoRefGene,116 xenoRefGene,128 accession.version-srcuniq.destuniq transMapEnsemblV5,419 transMapEstV5,388 transMapRefSeqV5,388 transMapRnaV5,388 transMapV5,494 accessions refSeqComposite,221 refSeqComposite,350 refSeqComposite,492 transMapEnsemblV5,391 transMapEstV5,360 transMapRefSeqV5,360 transMapRnaV5,360 transMapV5,466 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 accurately HLTOGAannotvHg38v1,91 acgt chainHg19,667 chainMm39,667 chainNetHg19,669 chainNetMm39,670 netHg19,667 netMm39,667 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids microsat,126 mrna,476 mrna,501 refSeqComposite,1775 refSeqComposite,1808 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,347 xenoRefGene,380 acronym uniprot,546 added chainHg19,591 chainMm39,591 chainNetHg19,593 chainNetMm39,594 nestedRepeats,147 netHg19,591 netMm39,591 transMapEnsemblV5,425 transMapEnsemblV5,435 transMapEstV5,394 transMapEstV5,404 transMapRefSeqV5,394 transMapRefSeqV5,404 transMapRnaV5,394 transMapRnaV5,404 transMapV5,500 transMapV5,510 uniprot,1187 additional HLTOGAannotvHg38v1,299 nestedRepeats,288 rmsk,295 additions refSeqComposite,118 adjust refSeqComposite,740 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainHg19,930 chainHg19,962 chainMm39,930 chainMm39,962 chainNetHg19,932 chainNetHg19,964 chainNetMm39,933 chainNetMm39,965 netHg19,930 netHg19,962 netMm39,930 netMm39,962 advise refSeqComposite,77 ae HLTOGAannotvHg38v1,347 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainHg19,85 chainMm39,85 chainNetHg19,87 chainNetMm39,88 netHg19,85 netMm39,85 after chainHg19,902 chainMm39,902 chainNetHg19,904 chainNetMm39,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netHg19,902 netMm39,902 uniprot,294 uniprot,1329 again transMapEnsemblV5,407 transMapEstV5,376 transMapRefSeqV5,376 transMapRnaV5,376 transMapV5,482 uniprot,629 uniprot,1500 against mrna,341 mrna,389 refSeqComposite,1228 transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 ahmed HLTOGAannotvHg38v1,348 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al HLTOGAannotvHg38v1,355 cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 refSeqComposite,1766 transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 xenoRefGene,338 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainHg19,194 chainMm39,194 chainNetHg19,196 chainNetMm39,197 netHg19,194 netMm39,194 uniprot,1216 alignable chainHg19,22 chainHg19,38 chainMm39,22 chainMm39,38 chainNetHg19,24 chainNetHg19,40 chainNetMm39,25 chainNetMm39,41 netHg19,22 netHg19,38 netMm39,22 netMm39,38 aligned chainHg19,584 chainMm39,584 chainNetHg19,586 chainNetMm39,587 mrna,388 mrna,400 netHg19,584 netMm39,584 refSeqComposite,80 refSeqComposite,189 refSeqComposite,304 refSeqComposite,894 refSeqComposite,1057 refSeqComposite,1227 refSeqComposite,1248 transMapV5,116 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,219 xenoRefGene,240 aligning chainHg19,133 chainHg19,329 chainHg19,359 chainMm39,133 chainMm39,329 chainMm39,359 chainNetHg19,135 chainNetHg19,331 chainNetHg19,361 chainNetMm39,136 chainNetMm39,332 chainNetMm39,362 netHg19,133 netHg19,329 netHg19,359 netMm39,133 netMm39,329 netMm39,359 uniprot,952 alignment HLTOGAannotvHg38v1,65 chainHg19,257 chainHg19,1012 chainMm39,257 chainMm39,1012 chainNetHg19,259 chainNetHg19,1014 chainNetMm39,260 chainNetMm39,1015 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netHg19,8 netHg19,257 netHg19,1012 netMm39,8 netMm39,257 netMm39,1012 refSeqComposite,193 refSeqComposite,327 refSeqComposite,458 refSeqComposite,1146 refSeqComposite,1237 refSeqComposite,1253 refSeqComposite,1732 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,103 transMapEnsemblV5,140 transMapEnsemblV5,196 transMapEnsemblV5,209 transMapEnsemblV5,387 transMapEnsemblV5,430 transMapEstV5,25 transMapEstV5,48 transMapEstV5,72 transMapEstV5,109 transMapEstV5,165 transMapEstV5,178 transMapEstV5,356 transMapEstV5,399 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,72 transMapRefSeqV5,109 transMapRefSeqV5,165 transMapRefSeqV5,178 transMapRefSeqV5,356 transMapRefSeqV5,399 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,72 transMapRnaV5,109 transMapRnaV5,165 transMapRnaV5,178 transMapRnaV5,356 transMapRnaV5,399 transMapV5,24 transMapV5,49 transMapV5,178 transMapV5,215 transMapV5,271 transMapV5,284 transMapV5,462 transMapV5,505 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments HLTOGAannotvHg38v1,23 HLTOGAannotvHg38v1,80 HLTOGAannotvHg38v1,313 augustusGene,300 chainHg19,9 chainHg19,63 chainHg19,444 chainHg19,596 chainHg19,608 chainHg19,616 chainHg19,642 chainHg19,760 chainHg19,1032 chainHg19,1097 chainMm39,9 chainMm39,63 chainMm39,444 chainMm39,596 chainMm39,608 chainMm39,616 chainMm39,642 chainMm39,760 chainMm39,1032 chainMm39,1097 chainNetHg19,11 chainNetHg19,65 chainNetHg19,446 chainNetHg19,598 chainNetHg19,610 chainNetHg19,618 chainNetHg19,644 chainNetHg19,762 chainNetHg19,1034 chainNetHg19,1099 chainNetHg19Viewchain,10 chainNetHg19Viewnet,10 chainNetMm39,12 chainNetMm39,66 chainNetMm39,447 chainNetMm39,599 chainNetMm39,611 chainNetMm39,619 chainNetMm39,645 chainNetMm39,763 chainNetMm39,1035 chainNetMm39,1100 chainNetMm39Viewchain,10 chainNetMm39Viewnet,10 mrna,15 mrna,414 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netHg19,63 netHg19,444 netHg19,596 netHg19,608 netHg19,616 netHg19,642 netHg19,760 netHg19,1032 netHg19,1097 netMm39,63 netMm39,444 netMm39,596 netMm39,608 netMm39,616 netMm39,642 netMm39,760 netMm39,1032 netMm39,1097 refSeqComposite,267 refSeqComposite,366 refSeqComposite,433 refSeqComposite,435 refSeqComposite,1207 refSeqComposite,1262 refSeqComposite,1419 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,154 transMapEnsemblV5,167 transMapEnsemblV5,325 transMapEnsemblV5,337 transMapEnsemblV5,347 transMapEnsemblV5,370 transMapEnsemblV5,441 transMapEnsemblV5,453 transMapEnsemblV5,768 transMapEstV5,19 transMapEstV5,41 transMapEstV5,123 transMapEstV5,136 transMapEstV5,294 transMapEstV5,306 transMapEstV5,316 transMapEstV5,339 transMapEstV5,410 transMapEstV5,422 transMapEstV5,737 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,123 transMapRefSeqV5,136 transMapRefSeqV5,294 transMapRefSeqV5,306 transMapRefSeqV5,316 transMapRefSeqV5,339 transMapRefSeqV5,410 transMapRefSeqV5,422 transMapRefSeqV5,737 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,123 transMapRnaV5,136 transMapRnaV5,294 transMapRnaV5,306 transMapRnaV5,316 transMapRnaV5,339 transMapRnaV5,410 transMapRnaV5,422 transMapRnaV5,737 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,67 transMapV5,85 transMapV5,127 transMapV5,140 transMapV5,229 transMapV5,242 transMapV5,400 transMapV5,412 transMapV5,422 transMapV5,445 transMapV5,516 transMapV5,528 transMapV5,843 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,254 aligns transMapV5,162 all augustusGene,207 chainHg19,615 chainMm39,615 chainNetHg19,617 chainNetMm39,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 mrna,135 mrna,189 mrna,244 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netHg19,615 netMm39,615 refSeqComposite,33 refSeqComposite,84 refSeqComposite,177 refSeqComposite,182 refSeqComposite,198 refSeqComposite,200 refSeqComposite,214 refSeqComposite,344 refSeqComposite,380 refSeqComposite,585 refSeqComposite,788 refSeqComposite,1405 refSeqComposite,1569 refSeqComposite,1661 refSeqComposite,1666 rmsk,65 transMapEnsemblV5,190 transMapEstV5,159 transMapRefSeqV5,159 transMapRnaV5,159 transMapV5,265 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allows augustusGene,168 chainHg19,80 chainMm39,80 chainNetHg19,82 chainNetMm39,83 mrna,334 netHg19,80 netMm39,80 refSeqComposite,821 transMapEnsemblV5,118 transMapEnsemblV5,287 transMapEstV5,87 transMapEstV5,256 transMapRefSeqV5,87 transMapRefSeqV5,256 transMapRnaV5,87 transMapRnaV5,256 transMapV5,193 transMapV5,362 xenoRefGene,147 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,181 transMapEstV5,150 transMapRefSeqV5,150 transMapRnaV5,150 transMapV5,256 alpha refSeqComposite,417 already chainHg19,805 chainMm39,805 chainNetHg19,807 chainNetMm39,808 netHg19,805 netMm39,805 also HLTOGAannotvHg38v1,190 chainHg19,91 chainMm39,91 chainNetHg19,93 chainNetMm39,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 gap,31 gold,33 mrna,216 mrna,324 mrna,368 netHg19,91 netMm39,91 refSeqComposite,1125 refSeqComposite,1316 refSeqComposite,1349 refSeqComposite,1581 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEnsemblV5,645 transMapEstV5,77 transMapEstV5,112 transMapEstV5,614 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRefSeqV5,614 transMapRnaV5,77 transMapRnaV5,112 transMapRnaV5,614 transMapV5,183 transMapV5,218 transMapV5,720 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter mrna,72 alternating gold,89 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,120 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 ambiguous refSeqComposite,986 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainHg19,151 chainHg19,177 chainHg19,183 chainMm39,151 chainMm39,177 chainMm39,183 chainNetHg19,153 chainNetHg19,179 chainNetHg19,185 chainNetMm39,154 chainNetMm39,180 chainNetMm39,186 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 gc5BaseBw,65 nestedRepeats,196 nestedRepeats,347 netHg19,151 netHg19,177 netHg19,183 netMm39,151 netMm39,177 netMm39,183 refSeqComposite,744 refSeqComposite,815 refSeqComposite,1236 refSeqComposite,1768 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analysis refSeqComposite,75 refSeqComposite,1454 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and HLTOGAannotvHg38v1,12 HLTOGAannotvHg38v1,34 HLTOGAannotvHg38v1,61 HLTOGAannotvHg38v1,69 HLTOGAannotvHg38v1,83 HLTOGAannotvHg38v1,86 HLTOGAannotvHg38v1,110 HLTOGAannotvHg38v1,130 HLTOGAannotvHg38v1,153 HLTOGAannotvHg38v1,176 HLTOGAannotvHg38v1,223 HLTOGAannotvHg38v1,310 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainHg19,97 chainHg19,111 chainHg19,225 chainHg19,233 chainHg19,247 chainHg19,285 chainHg19,307 chainHg19,433 chainHg19,587 chainHg19,622 chainHg19,630 chainHg19,771 chainHg19,849 chainHg19,881 chainHg19,892 chainHg19,901 chainHg19,926 chainHg19,941 chainHg19,966 chainHg19,972 chainHg19,978 chainHg19,985 chainHg19,991 chainHg19,1055 chainHg19,1060 chainMm39,97 chainMm39,111 chainMm39,225 chainMm39,233 chainMm39,247 chainMm39,285 chainMm39,307 chainMm39,433 chainMm39,587 chainMm39,622 chainMm39,630 chainMm39,771 chainMm39,849 chainMm39,881 chainMm39,892 chainMm39,901 chainMm39,926 chainMm39,941 chainMm39,966 chainMm39,972 chainMm39,978 chainMm39,985 chainMm39,991 chainMm39,1055 chainMm39,1060 chainNetHg19,9 chainNetHg19,99 chainNetHg19,113 chainNetHg19,227 chainNetHg19,235 chainNetHg19,249 chainNetHg19,287 chainNetHg19,309 chainNetHg19,435 chainNetHg19,589 chainNetHg19,624 chainNetHg19,632 chainNetHg19,773 chainNetHg19,851 chainNetHg19,883 chainNetHg19,894 chainNetHg19,903 chainNetHg19,928 chainNetHg19,943 chainNetHg19,968 chainNetHg19,974 chainNetHg19,980 chainNetHg19,987 chainNetHg19,993 chainNetHg19,1057 chainNetHg19,1062 chainNetHg19Viewchain,8 chainNetHg19Viewnet,8 chainNetMm39,10 chainNetMm39,100 chainNetMm39,114 chainNetMm39,228 chainNetMm39,236 chainNetMm39,250 chainNetMm39,288 chainNetMm39,310 chainNetMm39,436 chainNetMm39,590 chainNetMm39,625 chainNetMm39,633 chainNetMm39,774 chainNetMm39,852 chainNetMm39,884 chainNetMm39,895 chainNetMm39,904 chainNetMm39,929 chainNetMm39,944 chainNetMm39,969 chainNetMm39,975 chainNetMm39,981 chainNetMm39,988 chainNetMm39,994 chainNetMm39,1058 chainNetMm39,1063 chainNetMm39Viewchain,8 chainNetMm39Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netHg19,97 netHg19,111 netHg19,225 netHg19,233 netHg19,247 netHg19,285 netHg19,307 netHg19,433 netHg19,587 netHg19,622 netHg19,630 netHg19,771 netHg19,849 netHg19,881 netHg19,892 netHg19,901 netHg19,926 netHg19,941 netHg19,966 netHg19,972 netHg19,978 netHg19,985 netHg19,991 netHg19,1055 netHg19,1060 netMm39,97 netMm39,111 netMm39,225 netMm39,233 netMm39,247 netMm39,285 netMm39,307 netMm39,433 netMm39,587 netMm39,622 netMm39,630 netMm39,771 netMm39,849 netMm39,881 netMm39,892 netMm39,901 netMm39,926 netMm39,941 netMm39,966 netMm39,972 netMm39,978 netMm39,985 netMm39,991 netMm39,1055 netMm39,1060 refSeqComposite,8 refSeqComposite,21 refSeqComposite,71 refSeqComposite,109 refSeqComposite,119 refSeqComposite,142 refSeqComposite,191 refSeqComposite,202 refSeqComposite,230 refSeqComposite,256 refSeqComposite,264 refSeqComposite,272 refSeqComposite,300 refSeqComposite,364 refSeqComposite,466 refSeqComposite,490 refSeqComposite,571 refSeqComposite,590 refSeqComposite,653 refSeqComposite,663 refSeqComposite,703 refSeqComposite,715 refSeqComposite,801 refSeqComposite,826 refSeqComposite,859 refSeqComposite,879 refSeqComposite,911 refSeqComposite,953 refSeqComposite,969 refSeqComposite,992 refSeqComposite,1007 refSeqComposite,1124 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1174 refSeqComposite,1273 refSeqComposite,1368 refSeqComposite,1470 refSeqComposite,1488 refSeqComposite,1628 refSeqComposite,1669 refSeqComposite,1719 refSeqComposite,1805 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,93 transMapEnsemblV5,173 transMapEnsemblV5,198 transMapEnsemblV5,363 transMapEnsemblV5,365 transMapEnsemblV5,389 transMapEnsemblV5,406 transMapEnsemblV5,432 transMapEnsemblV5,463 transMapEnsemblV5,479 transMapEnsemblV5,494 transMapEnsemblV5,551 transMapEnsemblV5,636 transMapEnsemblV5,685 transMapEnsemblV5,699 transMapEnsemblV5,706 transMapEnsemblV5,764 transMapEstV5,9 transMapEstV5,62 transMapEstV5,142 transMapEstV5,167 transMapEstV5,332 transMapEstV5,334 transMapEstV5,358 transMapEstV5,375 transMapEstV5,401 transMapEstV5,432 transMapEstV5,448 transMapEstV5,463 transMapEstV5,520 transMapEstV5,605 transMapEstV5,654 transMapEstV5,668 transMapEstV5,675 transMapEstV5,733 transMapRefSeqV5,10 transMapRefSeqV5,62 transMapRefSeqV5,142 transMapRefSeqV5,167 transMapRefSeqV5,332 transMapRefSeqV5,334 transMapRefSeqV5,358 transMapRefSeqV5,375 transMapRefSeqV5,401 transMapRefSeqV5,432 transMapRefSeqV5,448 transMapRefSeqV5,463 transMapRefSeqV5,520 transMapRefSeqV5,605 transMapRefSeqV5,654 transMapRefSeqV5,668 transMapRefSeqV5,675 transMapRefSeqV5,733 transMapRnaV5,10 transMapRnaV5,62 transMapRnaV5,142 transMapRnaV5,167 transMapRnaV5,332 transMapRnaV5,334 transMapRnaV5,358 transMapRnaV5,375 transMapRnaV5,401 transMapRnaV5,432 transMapRnaV5,448 transMapRnaV5,463 transMapRnaV5,520 transMapRnaV5,605 transMapRnaV5,654 transMapRnaV5,668 transMapRnaV5,675 transMapRnaV5,733 transMapV5,8 transMapV5,16 transMapV5,73 transMapV5,87 transMapV5,138 transMapV5,161 transMapV5,168 transMapV5,248 transMapV5,273 transMapV5,438 transMapV5,440 transMapV5,464 transMapV5,481 transMapV5,507 transMapV5,538 transMapV5,554 transMapV5,569 transMapV5,626 transMapV5,711 transMapV5,760 transMapV5,774 transMapV5,781 transMapV5,839 ucscToINSDC,11 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annot unipOther,2 annotate HLTOGAannotvHg38v1,100 annotated HLTOGAannotvHg38v1,133 refSeqComposite,554 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation HLTOGAannotvHg38v1,31 HLTOGAannotvHg38v1,48 HLTOGAannotvHg38v1,358 chainHg19,296 chainMm39,296 chainNetHg19,298 chainNetMm39,299 netHg19,296 netMm39,296 refSeqComposite,66 refSeqComposite,664 refSeqComposite,1113 refSeqComposite,1142 refSeqComposite,1188 rmsk,38 transMapEnsemblV5,606 transMapEstV5,575 transMapRefSeqV5,575 transMapRnaV5,575 transMapV5,681 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations HLTOGAannotvHg38v1,5 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refSeqComposite,190 refSeqComposite,196 refSeqComposite,204 refSeqComposite,219 refSeqComposite,348 refSeqComposite,382 refSeqComposite,480 refSeqComposite,860 refSeqComposite,1466 refSeqComposite,1498 refSeqComposite,1534 transMapEnsemblV5,60 transMapEnsemblV5,539 transMapEnsemblV5,700 transMapEnsemblV5,708 transMapEstV5,508 transMapEstV5,669 transMapEstV5,677 transMapRefSeqV5,508 transMapRefSeqV5,669 transMapRefSeqV5,677 transMapRnaV5,508 transMapRnaV5,669 transMapRnaV5,677 transMapV5,75 transMapV5,614 transMapV5,775 transMapV5,783 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,186 another refSeqComposite,326 transMapV5,80 any mrna,259 refSeqComposite,273 refSeqComposite,1351 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 refSeqComposite,1307 refSeqComposite,1361 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 appending transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 apply mrna,131 approach uniprot,1531 appropriate refSeqComposite,771 xenoRefGene,110 apr HLTOGAannotvHg38v1,366 genscan,224 mrna,524 refSeqComposite,1737 xenoRefGene,309 apsects gc5BaseBw,51 arbitrary refSeqComposite,937 archive refSeqComposite,1703 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1342 refSeqComposite,1687 uniprot,1832 are HLTOGAannotvHg38v1,204 HLTOGAannotvHg38v1,277 augustusGene,27 chainHg19,21 chainHg19,40 chainHg19,53 chainHg19,140 chainHg19,208 chainHg19,219 chainHg19,318 chainHg19,387 chainHg19,408 chainHg19,415 chainHg19,498 chainHg19,687 chainMm39,21 chainMm39,40 chainMm39,53 chainMm39,140 chainMm39,208 chainMm39,219 chainMm39,318 chainMm39,387 chainMm39,408 chainMm39,415 chainMm39,498 chainMm39,687 chainNetHg19,23 chainNetHg19,42 chainNetHg19,55 chainNetHg19,142 chainNetHg19,210 chainNetHg19,221 chainNetHg19,320 chainNetHg19,389 chainNetHg19,410 chainNetHg19,417 chainNetHg19,500 chainNetHg19,689 chainNetMm39,24 chainNetMm39,43 chainNetMm39,56 chainNetMm39,143 chainNetMm39,211 chainNetMm39,222 chainNetMm39,321 chainNetMm39,390 chainNetMm39,411 chainNetMm39,418 chainNetMm39,501 chainNetMm39,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netHg19,21 netHg19,40 netHg19,53 netHg19,140 netHg19,208 netHg19,219 netHg19,318 netHg19,387 netHg19,408 netHg19,415 netHg19,498 netHg19,687 netMm39,21 netMm39,40 netMm39,53 netMm39,140 netMm39,208 netMm39,219 netMm39,318 netMm39,387 netMm39,408 netMm39,415 netMm39,498 netMm39,687 refSeqComposite,179 refSeqComposite,232 refSeqComposite,406 refSeqComposite,427 refSeqComposite,764 refSeqComposite,889 refSeqComposite,931 refSeqComposite,995 refSeqComposite,1022 refSeqComposite,1338 refSeqComposite,1372 refSeqComposite,1395 refSeqComposite,1473 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,451 transMapEnsemblV5,458 transMapEnsemblV5,467 transMapEnsemblV5,501 transMapEnsemblV5,511 transMapEnsemblV5,540 transMapEnsemblV5,579 transMapEstV5,42 transMapEstV5,420 transMapEstV5,427 transMapEstV5,436 transMapEstV5,470 transMapEstV5,480 transMapEstV5,509 transMapEstV5,548 transMapRefSeqV5,42 transMapRefSeqV5,420 transMapRefSeqV5,427 transMapRefSeqV5,436 transMapRefSeqV5,470 transMapRefSeqV5,480 transMapRefSeqV5,509 transMapRefSeqV5,548 transMapRnaV5,42 transMapRnaV5,420 transMapRnaV5,427 transMapRnaV5,436 transMapRnaV5,470 transMapRnaV5,480 transMapRnaV5,509 transMapRnaV5,548 transMapV5,41 transMapV5,68 transMapV5,526 transMapV5,533 transMapV5,542 transMapV5,576 transMapV5,586 transMapV5,615 transMapV5,654 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainHg19,939 chainMm39,939 chainNetHg19,941 chainNetMm39,942 nestedRepeats,305 netHg19,939 netMm39,939 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1101 as HLTOGAannotvHg38v1,9 HLTOGAannotvHg38v1,37 HLTOGAannotvHg38v1,42 HLTOGAannotvHg38v1,141 HLTOGAannotvHg38v1,199 HLTOGAannotvHg38v1,259 augustusGene,77 augustusGene,79 chainHg19,460 chainHg19,500 chainHg19,523 chainHg19,538 chainHg19,798 chainHg19,853 chainHg19,911 chainMm39,460 chainMm39,500 chainMm39,523 chainMm39,538 chainMm39,798 chainMm39,853 chainMm39,911 chainNetHg19,462 chainNetHg19,502 chainNetHg19,525 chainNetHg19,540 chainNetHg19,800 chainNetHg19,855 chainNetHg19,913 chainNetMm39,463 chainNetMm39,503 chainNetMm39,526 chainNetMm39,541 chainNetMm39,801 chainNetMm39,856 chainNetMm39,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 gap,70 genscan,35 genscan,37 microsat,21 nestedRepeats,125 netHg19,460 netHg19,500 netHg19,523 netHg19,538 netHg19,798 netHg19,853 netHg19,911 netMm39,460 netMm39,500 netMm39,523 netMm39,538 netMm39,798 netMm39,853 netMm39,911 refSeqComposite,413 refSeqComposite,502 refSeqComposite,522 refSeqComposite,535 refSeqComposite,622 refSeqComposite,890 refSeqComposite,1219 refSeqComposite,1400 refSeqComposite,1516 refSeqComposite,1636 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,187 transMapEnsemblV5,213 transMapEnsemblV5,225 transMapEnsemblV5,513 transMapEnsemblV5,624 transMapEstV5,156 transMapEstV5,182 transMapEstV5,194 transMapEstV5,482 transMapEstV5,593 transMapRefSeqV5,156 transMapRefSeqV5,182 transMapRefSeqV5,194 transMapRefSeqV5,482 transMapRefSeqV5,593 transMapRnaV5,156 transMapRnaV5,182 transMapRnaV5,194 transMapRnaV5,482 transMapRnaV5,593 transMapV5,262 transMapV5,288 transMapV5,300 transMapV5,588 transMapV5,699 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refSeqComposite,122 aspect refSeqComposite,705 assemblies augustusGene,196 augustusGene,237 chainHg19,317 chainHg19,579 chainMm39,317 chainMm39,579 chainNetHg19,319 chainNetHg19,581 chainNetMm39,320 chainNetMm39,582 gap,130 netHg19,317 netHg19,579 netMm39,317 netMm39,579 refSeqComposite,183 rmsk,107 transMapEnsemblV5,192 transMapEstV5,161 transMapRefSeqV5,161 transMapRnaV5,161 transMapV5,267 assembly HLTOGAannotvHg38v1,209 augustusGene,197 chainHg19,149 chainHg19,156 chainHg19,304 chainMm39,149 chainMm39,156 chainMm39,304 chainNetHg19,151 chainNetHg19,158 chainNetHg19,306 chainNetMm39,152 chainNetMm39,159 chainNetMm39,307 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netHg19,149 netHg19,156 netHg19,304 netMm39,149 netMm39,156 netMm39,304 refSeqComposite,370 refSeqComposite,476 transMapV5,105 transMapV5,123 transMapV5,134 ucscToINSDC,40 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,649 assigned transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 gc5BaseBw,34 refSeqComposite,1396 rmsk,224 simpleRepeat,51 transMapEnsemblV5,580 transMapEstV5,549 transMapRefSeqV5,549 transMapRnaV5,549 transMapV5,655 uniprot,787 associates ucscToINSDC,16 association refSeqComposite,681 astashyn refSeqComposite,1753 xenoRefGene,325 at HLTOGAannotvHg38v1,362 chainHg19,417 chainHg19,793 chainHg19,915 chainHg19,950 chainHg19,955 chainHg19,996 chainMm39,417 chainMm39,793 chainMm39,915 chainMm39,950 chainMm39,955 chainMm39,996 chainNetHg19,419 chainNetHg19,795 chainNetHg19,917 chainNetHg19,952 chainNetHg19,957 chainNetHg19,998 chainNetMm39,420 chainNetMm39,796 chainNetMm39,918 chainNetMm39,953 chainNetMm39,958 chainNetMm39,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netHg19,417 netHg19,793 netHg19,915 netHg19,950 netHg19,955 netHg19,996 netMm39,417 netMm39,793 netMm39,915 netMm39,950 netMm39,955 netMm39,996 refSeqComposite,731 refSeqComposite,1046 refSeqComposite,1150 refSeqComposite,1274 refSeqComposite,1711 rmsk,243 rmsk,267 transMapEnsemblV5,293 transMapEnsemblV5,681 transMapEstV5,262 transMapEstV5,650 transMapRefSeqV5,262 transMapRefSeqV5,650 transMapRnaV5,262 transMapRnaV5,650 transMapV5,117 transMapV5,368 transMapV5,756 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,536 transMapEstV5,505 transMapRefSeqV5,505 transMapRnaV5,505 transMapV5,611 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available HLTOGAannotvHg38v1,329 augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 nestedRepeats,259 nestedRepeats,276 refSeqComposite,180 refSeqComposite,276 refSeqComposite,473 refSeqComposite,565 refSeqComposite,650 refSeqComposite,1339 refSeqComposite,1591 rmsk,73 transMapEnsemblV5,188 transMapEnsemblV5,245 transMapEstV5,157 transMapEstV5,214 transMapRefSeqV5,157 transMapRefSeqV5,214 transMapRnaV5,157 transMapRnaV5,214 transMapV5,263 transMapV5,320 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aw HLTOGAannotvHg38v1,349 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainHg19,600 chainHg19,607 chainMm39,600 chainMm39,607 chainNetHg19,602 chainNetHg19,609 chainNetMm39,603 chainNetMm39,610 netHg19,600 netHg19,607 netMm39,600 netMm39,607 axtchain chainHg19,612 chainHg19,698 chainHg19,946 chainMm39,612 chainMm39,698 chainMm39,946 chainNetHg19,614 chainNetHg19,700 chainNetHg19,948 chainNetMm39,615 chainNetMm39,701 chainNetMm39,949 netHg19,612 netHg19,698 netHg19,946 netMm39,612 netMm39,698 netMm39,946 b transMapEnsemblV5,717 transMapEnsemblV5,727 transMapEstV5,686 transMapEstV5,696 transMapRefSeqV5,686 transMapRefSeqV5,696 transMapRnaV5,686 transMapRnaV5,696 transMapV5,792 transMapV5,802 back chainHg19,592 chainMm39,592 chainNetHg19,594 chainNetMm39,595 netHg19,592 netMm39,592 baertsch augustusGene,290 chainHg19,984 chainHg19,1042 chainHg19,1088 chainMm39,984 chainMm39,1042 chainMm39,1088 chainNetHg19,986 chainNetHg19,1044 chainNetHg19,1090 chainNetMm39,987 chainNetMm39,1045 chainNetMm39,1091 netHg19,984 netHg19,1042 netHg19,1088 netMm39,984 netMm39,1042 netMm39,1088 transMapEnsemblV5,758 transMapEstV5,727 transMapRefSeqV5,727 transMapRnaV5,727 transMapV5,833 bairoch uniprot,2022 band cytoBandIdeo,2 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 mrna,356 mrna,409 mrna,417 mrna,429 refSeqComposite,1257 refSeqComposite,1265 refSeqComposite,1277 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 base-level transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 based augustusGene,28 chainHg19,320 chainHg19,346 chainMm39,320 chainMm39,346 chainNetHg19,322 chainNetHg19,348 chainNetMm39,323 chainNetMm39,349 genscan,26 netHg19,320 netHg19,346 netMm39,320 netMm39,346 refSeqComposite,251 refSeqComposite,359 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 gap,139 gc5BaseBw,25 refSeqComposite,897 transMapV5,165 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,456 transMapEstV5,425 transMapRefSeqV5,425 transMapRnaV5,425 transMapV5,531 bc149621.1-1 transMapEnsemblV5,462 transMapEnsemblV5,473 transMapEstV5,431 transMapEstV5,442 transMapRefSeqV5,431 transMapRefSeqV5,442 transMapRnaV5,431 transMapRnaV5,442 transMapV5,537 transMapV5,548 bc149621.1-1.1 transMapEnsemblV5,484 transMapEstV5,453 transMapRefSeqV5,453 transMapRnaV5,453 transMapV5,559 bc149621.1-2 transMapEnsemblV5,464 transMapEnsemblV5,486 transMapEstV5,433 transMapEstV5,455 transMapRefSeqV5,433 transMapRefSeqV5,455 transMapRnaV5,433 transMapRnaV5,455 transMapV5,539 transMapV5,561 bc149621.1-2.1 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 bc149621.1-2.2 transMapEnsemblV5,495 transMapEstV5,464 transMapRefSeqV5,464 transMapRnaV5,464 transMapV5,570 be augustusGene,99 chainHg19,106 chainHg19,427 chainMm39,106 chainMm39,427 chainNetHg19,108 chainNetHg19,429 chainNetMm39,109 chainNetMm39,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 gc5BaseBw,41 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netHg19,106 netHg19,427 netMm39,106 netMm39,427 refSeqComposite,303 refSeqComposite,725 refSeqComposite,935 refSeqComposite,966 refSeqComposite,1026 refSeqComposite,1103 refSeqComposite,1191 refSeqComposite,1294 refSeqComposite,1301 refSeqComposite,1317 refSeqComposite,1389 refSeqComposite,1449 refSeqComposite,1480 refSeqComposite,1500 refSeqComposite,1508 refSeqComposite,1582 refSeqComposite,1604 refSeqComposite,1674 refSeqComposite,1699 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,524 transMapEnsemblV5,553 transMapEnsemblV5,608 transMapEnsemblV5,616 transMapEnsemblV5,639 transMapEnsemblV5,646 transMapEstV5,78 transMapEstV5,113 transMapEstV5,493 transMapEstV5,522 transMapEstV5,577 transMapEstV5,585 transMapEstV5,608 transMapEstV5,615 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,493 transMapRefSeqV5,522 transMapRefSeqV5,577 transMapRefSeqV5,585 transMapRefSeqV5,608 transMapRefSeqV5,615 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,493 transMapRnaV5,522 transMapRnaV5,577 transMapRnaV5,585 transMapRnaV5,608 transMapRnaV5,615 transMapV5,184 transMapV5,219 transMapV5,599 transMapV5,628 transMapV5,683 transMapV5,691 transMapV5,714 transMapV5,721 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,86 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 uniprot,674 bed3 windowmaskerSdust,76 been chainHg19,568 chainMm39,568 chainNetHg19,570 chainNetMm39,571 nestedRepeats,89 netHg19,568 netMm39,568 refSeqComposite,635 refSeqComposite,673 refSeqComposite,683 refSeqComposite,698 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainHg19,900 chainMm39,900 chainNetHg19,902 chainNetMm39,903 netHg19,900 netMm39,900 uniprot,934 begin refSeqComposite,222 refSeqComposite,351 beginning refSeqComposite,1048 refSeqComposite,1645 beloow refSeqComposite,337 below chainHg19,674 chainMm39,674 chainNetHg19,676 chainNetMm39,677 genscan,154 genscan,168 nestedRepeats,68 netHg19,674 netMm39,674 refSeqComposite,1391 refSeqComposite,1528 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainHg19,265 chainHg19,510 chainMm39,265 chainMm39,510 chainNetHg19,267 chainNetHg19,512 chainNetMm39,268 chainNetMm39,513 mrna,424 netHg19,265 netHg19,510 netMm39,265 netMm39,510 refSeqComposite,1272 transMapEnsemblV5,240 transMapEstV5,209 transMapRefSeqV5,209 transMapRnaV5,209 transMapV5,66 transMapV5,315 uniprot,1074 uniprot,1415 xenoRefGene,264 beta uniprot,364 better mrna,52 between HLTOGAannotvHg38v1,66 chainHg19,51 chainHg19,617 chainHg19,847 chainMm39,51 chainMm39,617 chainMm39,847 chainNetHg19,53 chainNetHg19,619 chainNetHg19,849 chainNetMm39,54 chainNetMm39,620 chainNetMm39,850 gap,126 gold,97 gold,102 mrna,16 ncbiRefSeqGenomicDiff,4 netHg19,51 netHg19,617 netHg19,847 netMm39,51 netMm39,617 netMm39,847 refSeqComposite,64 refSeqComposite,460 refSeqComposite,874 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1375 refSeqComposite,1386 refSeqComposite,1476 uniprot,1736 bigbedtobed refSeqComposite,1505 refSeqComposite,1545 transMapEnsemblV5,613 transMapEnsemblV5,658 transMapEstV5,582 transMapEstV5,627 transMapRefSeqV5,582 transMapRefSeqV5,627 transMapRnaV5,582 transMapRnaV5,627 transMapV5,688 transMapV5,733 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,543 transMapEstV5,512 transMapRefSeqV5,512 transMapRnaV5,512 transMapV5,618 bin refSeqComposite,1431 refSeqComposite,1461 binaries transMapEnsemblV5,637 transMapEstV5,606 transMapRefSeqV5,606 transMapRnaV5,606 transMapV5,712 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1519 transMapEnsemblV5,627 transMapEstV5,596 transMapRefSeqV5,596 transMapRnaV5,596 transMapV5,702 uniprot,1781 biocomput chainHg19,1035 chainMm39,1035 chainNetHg19,1037 chainNetMm39,1038 netHg19,1035 netMm39,1035 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 biological uniprot,320 biology genscan,200 birds HLTOGAannotvHg38v1,60 augustusGene,203 black gap,71 gap,110 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like mrna,518 refSeqComposite,1731 xenoRefGene,303 blastz chainHg19,912 chainHg19,1099 chainMm39,912 chainMm39,1099 chainNetHg19,914 chainNetHg19,1101 chainNetMm39,915 chainNetMm39,1102 netHg19,912 netHg19,1099 netMm39,912 netMm39,1099 transMapEnsemblV5,78 transMapEnsemblV5,195 transMapEstV5,47 transMapEstV5,164 transMapRefSeqV5,47 transMapRefSeqV5,164 transMapRnaV5,47 transMapRnaV5,164 transMapV5,48 transMapV5,143 transMapV5,270 blat mrna,394 mrna,516 refSeqComposite,1233 refSeqComposite,1729 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,125 transMapV5,149 transMapV5,156 transMapV5,241 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainHg19,44 chainHg19,639 chainHg19,660 chainMm39,44 chainMm39,639 chainMm39,660 chainNetHg19,46 chainNetHg19,641 chainNetHg19,662 chainNetMm39,47 chainNetMm39,642 chainNetMm39,663 gold,107 gold,134 netHg19,44 netHg19,639 netHg19,660 netMm39,44 netMm39,639 netMm39,660 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 blumer HLTOGAannotvHg38v1,344 bm HLTOGAannotvHg38v1,335 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainHg19,95 chainHg19,115 chainHg19,168 chainHg19,890 chainMm39,95 chainMm39,115 chainMm39,168 chainMm39,890 chainNetHg19,97 chainNetHg19,117 chainNetHg19,170 chainNetHg19,892 chainNetMm39,98 chainNetMm39,118 chainNetMm39,171 chainNetMm39,893 netHg19,95 netHg19,115 netHg19,168 netHg19,890 netMm39,95 netMm39,115 netMm39,168 netMm39,890 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 uniprot,675 uniprot,1616 xenoRefGene,124 xenoRefGene,195 bothgap chainHg19,741 chainMm39,741 chainNetHg19,743 chainNetMm39,744 netHg19,741 netMm39,741 boundaries HLTOGAannotvHg38v1,111 gold,82 box chainHg19,370 chainHg19,452 chainMm39,370 chainMm39,452 chainNetHg19,372 chainNetHg19,454 chainNetMm39,373 chainNetMm39,455 gap,111 mrna,151 mrna,162 mrna,202 netHg19,370 netHg19,452 netMm39,370 netMm39,452 xenoRefGene,214 boxes chainHg19,121 chainHg19,131 chainHg19,441 chainMm39,121 chainMm39,131 chainMm39,441 chainNetHg19,123 chainNetHg19,133 chainNetHg19,443 chainNetMm39,124 chainNetMm39,134 chainNetMm39,444 gap,72 mrna,122 nestedRepeats,126 netHg19,121 netHg19,131 netHg19,441 netMm39,121 netMm39,131 netMm39,441 refSeqComposite,165 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,942 branch transMapEnsemblV5,218 transMapEstV5,187 transMapRefSeqV5,187 transMapRnaV5,187 transMapV5,293 branch-point augustusGene,55 brejov transMapEnsemblV5,715 transMapEstV5,684 transMapRefSeqV5,684 transMapRnaV5,684 transMapV5,790 brian uniprot,1959 bridge gold,132 bridged gap,100 briefly uniprot,778 brown gold,92 gold,106 refSeqComposite,1747 xenoRefGene,319 browser chainHg19,970 chainMm39,970 chainNetHg19,972 chainNetMm39,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netHg19,970 netMm39,970 refSeqComposite,1121 refSeqComposite,1183 refSeqComposite,1309 refSeqComposite,1446 transMapEnsemblV5,37 transMapEnsemblV5,164 transMapEnsemblV5,530 transMapEstV5,35 transMapEstV5,133 transMapEstV5,499 transMapRefSeqV5,35 transMapRefSeqV5,133 transMapRefSeqV5,499 transMapRnaV5,35 transMapRnaV5,133 transMapRnaV5,499 transMapV5,34 transMapV5,239 transMapV5,605 ucscToINSDC,19 uniprot,1544 uniprot,1721 browsing uniprot,1662 build refSeqComposite,299 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but HLTOGAannotvHg38v1,194 HLTOGAannotvHg38v1,249 chainHg19,543 chainMm39,543 chainNetHg19,545 chainNetMm39,546 netHg19,543 netMm39,543 refSeqComposite,426 refSeqComposite,895 refSeqComposite,1028 refSeqComposite,1447 rmsk,311 uniprot,638 uniprot,1047 button chainHg19,341 chainMm39,341 chainNetHg19,343 chainNetMm39,344 netHg19,341 netMm39,341 by HLTOGAannotvHg38v1,319 augustusGene,147 augustusGene,266 augustusGene,282 chainHg19,108 chainHg19,124 chainHg19,311 chainHg19,374 chainHg19,411 chainHg19,429 chainHg19,807 chainHg19,919 chainHg19,938 chainHg19,958 chainHg19,982 chainHg19,1003 chainMm39,108 chainMm39,124 chainMm39,311 chainMm39,374 chainMm39,411 chainMm39,429 chainMm39,807 chainMm39,919 chainMm39,938 chainMm39,958 chainMm39,982 chainMm39,1003 chainNetHg19,110 chainNetHg19,126 chainNetHg19,313 chainNetHg19,376 chainNetHg19,413 chainNetHg19,431 chainNetHg19,809 chainNetHg19,921 chainNetHg19,940 chainNetHg19,960 chainNetHg19,984 chainNetHg19,1005 chainNetMm39,111 chainNetMm39,127 chainNetMm39,314 chainNetMm39,377 chainNetMm39,414 chainNetMm39,432 chainNetMm39,810 chainNetMm39,922 chainNetMm39,941 chainNetMm39,961 chainNetMm39,985 chainNetMm39,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netHg19,108 netHg19,124 netHg19,311 netHg19,374 netHg19,411 netHg19,429 netHg19,807 netHg19,919 netHg19,938 netHg19,958 netHg19,982 netHg19,1003 netMm39,108 netMm39,124 netMm39,311 netMm39,374 netMm39,411 netMm39,429 netMm39,807 netMm39,919 netMm39,938 netMm39,958 netMm39,982 netMm39,1003 refSeqComposite,38 refSeqComposite,49 refSeqComposite,69 refSeqComposite,206 refSeqComposite,371 refSeqComposite,384 refSeqComposite,444 refSeqComposite,555 refSeqComposite,624 refSeqComposite,637 refSeqComposite,641 refSeqComposite,685 refSeqComposite,761 refSeqComposite,766 refSeqComposite,843 refSeqComposite,861 refSeqComposite,1200 refSeqComposite,1716 refSeqComposite,1721 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,227 transMapEnsemblV5,395 transMapEnsemblV5,678 transMapEnsemblV5,696 transMapEnsemblV5,702 transMapEnsemblV5,740 transMapEstV5,21 transMapEstV5,196 transMapEstV5,364 transMapEstV5,647 transMapEstV5,665 transMapEstV5,671 transMapEstV5,709 transMapRefSeqV5,21 transMapRefSeqV5,196 transMapRefSeqV5,364 transMapRefSeqV5,647 transMapRefSeqV5,665 transMapRefSeqV5,671 transMapRefSeqV5,709 transMapRnaV5,21 transMapRnaV5,196 transMapRnaV5,364 transMapRnaV5,647 transMapRnaV5,665 transMapRnaV5,671 transMapRnaV5,709 transMapV5,20 transMapV5,302 transMapV5,470 transMapV5,753 transMapV5,771 transMapV5,777 transMapV5,815 ucscToINSDC,50 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c HLTOGAannotvHg38v1,337 cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,913 refSeqComposite,954 refSeqComposite,981 refSeqComposite,1040 refSeqComposite,1067 refSeqComposite,1079 transMapEnsemblV5,725 transMapEnsemblV5,731 transMapEstV5,694 transMapEstV5,700 transMapRefSeqV5,694 transMapRefSeqV5,700 transMapRnaV5,694 transMapRnaV5,700 transMapV5,800 transMapV5,806 windowmaskerSdust,30 c-114100-125-31 chainHg19,669 chainMm39,669 chainNetHg19,671 chainNetMm39,672 netHg19,669 netMm39,669 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainHg19,954 chainHg19,1000 chainMm39,954 chainMm39,1000 chainNetHg19,956 chainNetHg19,1002 chainNetMm39,957 chainNetMm39,1003 netHg19,954 netHg19,1000 netMm39,954 netMm39,1000 can augustusGene,98 chainHg19,90 chainHg19,105 chainMm39,90 chainMm39,105 chainNetHg19,92 chainNetHg19,107 chainNetMm39,93 chainNetMm39,108 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 mrna,64 mrna,195 netHg19,90 netHg19,105 netMm39,90 netMm39,105 refSeqComposite,286 refSeqComposite,724 refSeqComposite,1102 refSeqComposite,1190 refSeqComposite,1293 refSeqComposite,1300 refSeqComposite,1315 refSeqComposite,1348 refSeqComposite,1388 refSeqComposite,1448 refSeqComposite,1456 refSeqComposite,1479 refSeqComposite,1499 refSeqComposite,1507 refSeqComposite,1560 refSeqComposite,1580 refSeqComposite,1603 refSeqComposite,1673 refSeqComposite,1698 rmsk,116 simpleRepeat,35 transMapEnsemblV5,523 transMapEnsemblV5,552 transMapEnsemblV5,607 transMapEnsemblV5,615 transMapEnsemblV5,638 transMapEnsemblV5,644 transMapEstV5,492 transMapEstV5,521 transMapEstV5,576 transMapEstV5,584 transMapEstV5,607 transMapEstV5,613 transMapRefSeqV5,492 transMapRefSeqV5,521 transMapRefSeqV5,576 transMapRefSeqV5,584 transMapRefSeqV5,607 transMapRefSeqV5,613 transMapRnaV5,492 transMapRnaV5,521 transMapRnaV5,576 transMapRnaV5,584 transMapRnaV5,607 transMapRnaV5,613 transMapV5,598 transMapV5,627 transMapV5,682 transMapV5,690 transMapV5,713 transMapV5,719 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,85 cannot uniprot,1269 cases chainHg19,190 chainHg19,398 chainMm39,190 chainMm39,398 chainNetHg19,192 chainNetHg19,400 chainNetMm39,193 chainNetMm39,401 netHg19,190 netHg19,398 netMm39,190 netMm39,398 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainHg19,499 chainMm39,499 chainNetHg19,501 chainNetMm39,502 netHg19,499 netMm39,499 cauldron chainHg19,1052 chainMm39,1052 chainNetHg19,1054 chainNetMm39,1055 netHg19,1052 netMm39,1052 cause chainHg19,481 chainMm39,481 chainNetHg19,483 chainNetMm39,484 netHg19,481 netMm39,481 caused chainHg19,107 chainMm39,107 chainNetHg19,109 chainNetMm39,110 netHg19,107 netMm39,107 cavanaugh mrna,462 cb transMapEnsemblV5,791 transMapEstV5,760 transMapRefSeqV5,760 transMapRnaV5,760 transMapV5,866 cdna augustusGene,299 refSeqComposite,266 refSeqComposite,362 transMapEnsemblV5,388 transMapEnsemblV5,684 transMapEnsemblV5,767 transMapEstV5,357 transMapEstV5,653 transMapEstV5,736 transMapRefSeqV5,357 transMapRefSeqV5,653 transMapRefSeqV5,736 transMapRnaV5,357 transMapRnaV5,653 transMapRnaV5,736 transMapV5,15 transMapV5,463 transMapV5,759 transMapV5,842 cdnas transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 cds HLTOGAannotvHg38v1,148 HLTOGAannotvHg38v1,170 HLTOGAannotvHg38v1,182 HLTOGAannotvHg38v1,203 HLTOGAannotvHg38v1,217 HLTOGAannotvHg38v1,229 HLTOGAannotvHg38v1,248 cell uniprot,563 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cesar HLTOGAannotvHg38v1,102 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainHg19,2 chainHg19,27 chainHg19,57 chainHg19,60 chainHg19,118 chainHg19,268 chainHg19,309 chainHg19,404 chainHg19,459 chainHg19,563 chainHg19,767 chainHg19,810 chainHg19,821 chainHg19,829 chainHg19,834 chainHg19,857 chainHg19,866 chainMm39,2 chainMm39,27 chainMm39,57 chainMm39,60 chainMm39,118 chainMm39,268 chainMm39,309 chainMm39,404 chainMm39,459 chainMm39,563 chainMm39,767 chainMm39,810 chainMm39,821 chainMm39,829 chainMm39,834 chainMm39,857 chainMm39,866 chainNetHg19,8 chainNetHg19,29 chainNetHg19,59 chainNetHg19,62 chainNetHg19,120 chainNetHg19,270 chainNetHg19,311 chainNetHg19,406 chainNetHg19,461 chainNetHg19,565 chainNetHg19,769 chainNetHg19,812 chainNetHg19,823 chainNetHg19,831 chainNetHg19,836 chainNetHg19,859 chainNetHg19,868 chainNetHg19Viewchain,1 chainNetHg19Viewchain,7 chainNetHg19Viewnet,7 chainNetMm39,2 chainNetMm39,9 chainNetMm39,30 chainNetMm39,60 chainNetMm39,63 chainNetMm39,121 chainNetMm39,271 chainNetMm39,312 chainNetMm39,407 chainNetMm39,462 chainNetMm39,566 chainNetMm39,770 chainNetMm39,813 chainNetMm39,824 chainNetMm39,832 chainNetMm39,837 chainNetMm39,860 chainNetMm39,869 chainNetMm39Viewchain,1 chainNetMm39Viewchain,7 chainNetMm39Viewnet,7 netHg19,27 netHg19,57 netHg19,60 netHg19,118 netHg19,268 netHg19,309 netHg19,404 netHg19,459 netHg19,563 netHg19,767 netHg19,810 netHg19,821 netHg19,829 netHg19,834 netHg19,857 netHg19,866 netMm39,27 netMm39,57 netMm39,60 netMm39,118 netMm39,268 netMm39,309 netMm39,404 netMm39,459 netMm39,563 netMm39,767 netMm39,810 netMm39,821 netMm39,829 netMm39,834 netMm39,857 netMm39,866 transMapV5,137 uniprot,290 chained chainHg19,8 chainMm39,8 chainnet chainHg19,784 chainHg19,989 chainMm39,784 chainMm39,989 chainNetHg19,2 chainNetHg19,786 chainNetHg19,991 chainNetMm39,787 chainNetMm39,992 netHg19,784 netHg19,989 netMm39,784 netMm39,989 chains chainHg19,193 chainHg19,204 chainHg19,215 chainHg19,314 chainHg19,353 chainHg19,386 chainHg19,391 chainHg19,413 chainHg19,425 chainHg19,432 chainHg19,489 chainHg19,657 chainHg19,672 chainHg19,686 chainHg19,755 chainHg19,776 chainHg19,791 chainHg19,851 chainHg19,882 chainHg19,977 chainMm39,193 chainMm39,204 chainMm39,215 chainMm39,314 chainMm39,353 chainMm39,386 chainMm39,391 chainMm39,413 chainMm39,425 chainMm39,432 chainMm39,489 chainMm39,657 chainMm39,672 chainMm39,686 chainMm39,755 chainMm39,776 chainMm39,791 chainMm39,851 chainMm39,882 chainMm39,977 chainNetHg19,195 chainNetHg19,206 chainNetHg19,217 chainNetHg19,316 chainNetHg19,355 chainNetHg19,388 chainNetHg19,393 chainNetHg19,415 chainNetHg19,427 chainNetHg19,434 chainNetHg19,491 chainNetHg19,659 chainNetHg19,674 chainNetHg19,688 chainNetHg19,757 chainNetHg19,778 chainNetHg19,793 chainNetHg19,853 chainNetHg19,884 chainNetHg19,979 chainNetMm39,196 chainNetMm39,207 chainNetMm39,218 chainNetMm39,317 chainNetMm39,356 chainNetMm39,389 chainNetMm39,394 chainNetMm39,416 chainNetMm39,428 chainNetMm39,435 chainNetMm39,492 chainNetMm39,660 chainNetMm39,675 chainNetMm39,689 chainNetMm39,758 chainNetMm39,779 chainNetMm39,794 chainNetMm39,854 chainNetMm39,885 chainNetMm39,980 netHg19,193 netHg19,204 netHg19,215 netHg19,314 netHg19,353 netHg19,386 netHg19,391 netHg19,413 netHg19,425 netHg19,432 netHg19,489 netHg19,657 netHg19,672 netHg19,686 netHg19,755 netHg19,776 netHg19,791 netHg19,851 netHg19,882 netHg19,977 netMm39,193 netMm39,204 netMm39,215 netMm39,314 netMm39,353 netMm39,386 netMm39,391 netMm39,413 netMm39,425 netMm39,432 netMm39,489 netMm39,657 netMm39,672 netMm39,686 netMm39,755 netMm39,776 netMm39,791 netMm39,851 netMm39,882 netMm39,977 transMapEnsemblV5,80 transMapEnsemblV5,197 transMapEnsemblV5,210 transMapEnsemblV5,256 transMapEnsemblV5,281 transMapEnsemblV5,329 transMapEnsemblV5,510 transMapEstV5,49 transMapEstV5,166 transMapEstV5,179 transMapEstV5,225 transMapEstV5,250 transMapEstV5,298 transMapEstV5,479 transMapRefSeqV5,49 transMapRefSeqV5,166 transMapRefSeqV5,179 transMapRefSeqV5,225 transMapRefSeqV5,250 transMapRefSeqV5,298 transMapRefSeqV5,479 transMapRnaV5,49 transMapRnaV5,166 transMapRnaV5,179 transMapRnaV5,225 transMapRnaV5,250 transMapRnaV5,298 transMapRnaV5,479 transMapV5,50 transMapV5,86 transMapV5,272 transMapV5,285 transMapV5,331 transMapV5,356 transMapV5,404 transMapV5,585 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 mrna,68 refSeqComposite,905 refSeqComposite,919 changed rmsk,285 uniprot,1382 characteristic mrna,273 check chainHg19,336 chainMm39,336 chainNetHg19,338 chainNetMm39,339 netHg19,336 netMm39,336 check-box refSeqComposite,729 checkbox uniprot,231 chiaromonte chainHg19,1022 chainMm39,1022 chainNetHg19,1024 chainNetMm39,1025 netHg19,1022 netMm39,1022 chicken HLTOGAannotvHg38v1,57 augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 mrna,229 mrna,268 uniprot,657 chosen mrna,291 refSeqComposite,534 chr16 refSeqComposite,1553 chr4 chainHg19,368 chainMm39,368 chainNetHg19,370 chainNetMm39,371 netHg19,368 netMm39,368 chr6 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 transMapV5,742 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,158 chrom refSeqComposite,1552 transMapEnsemblV5,666 transMapEstV5,635 transMapRefSeqV5,635 transMapRnaV5,635 transMapV5,741 uniprot,1819 chromosome chainHg19,245 chainHg19,323 chainHg19,348 chainHg19,356 chainHg19,366 chainHg19,375 chainHg19,522 chainHg19,537 chainHg19,553 chainHg19,621 chainHg19,626 chainMm39,245 chainMm39,323 chainMm39,348 chainMm39,356 chainMm39,366 chainMm39,375 chainMm39,522 chainMm39,537 chainMm39,553 chainMm39,621 chainMm39,626 chainNetHg19,247 chainNetHg19,325 chainNetHg19,350 chainNetHg19,358 chainNetHg19,368 chainNetHg19,377 chainNetHg19,524 chainNetHg19,539 chainNetHg19,555 chainNetHg19,623 chainNetHg19,628 chainNetMm39,248 chainNetMm39,326 chainNetMm39,351 chainNetMm39,359 chainNetMm39,369 chainNetMm39,378 chainNetMm39,525 chainNetMm39,540 chainNetMm39,556 chainNetMm39,624 chainNetMm39,629 cytoBandIdeo,1 gap,129 netHg19,245 netHg19,323 netHg19,348 netHg19,356 netHg19,366 netHg19,375 netHg19,522 netHg19,537 netHg19,553 netHg19,621 netHg19,626 netMm39,245 netMm39,323 netMm39,348 netMm39,356 netMm39,366 netMm39,375 netMm39,522 netMm39,537 netMm39,553 netMm39,621 netMm39,626 ucscToINSDC,20 uniprot,1416 chromosome-based chainHg19,316 chainMm39,316 chainNetHg19,318 chainNetMm39,319 netHg19,316 netMm39,316 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 clark mrna,464 class rmsk,199 rmsk,253 classes rmsk,150 classification HLTOGAannotvHg38v1,140 HLTOGAannotvHg38v1,304 rmsk,266 rmsk,282 classify HLTOGAannotvHg38v1,256 classifying HLTOGAannotvHg38v1,35 clawson gc5BaseBw,83 ucscToINSDC,52 cleaved uniprot,249 click chainHg19,449 chainHg19,463 chainMm39,449 chainMm39,463 chainNetHg19,451 chainNetHg19,465 chainNetMm39,452 chainNetMm39,466 gc5BaseBw,56 netHg19,449 netHg19,463 netMm39,449 netMm39,463 refSeqComposite,747 refSeqComposite,769 transMapEnsemblV5,135 transMapEnsemblV5,149 transMapEstV5,104 transMapEstV5,118 transMapRefSeqV5,104 transMapRefSeqV5,118 transMapRnaV5,104 transMapRnaV5,118 transMapV5,210 transMapV5,224 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,108 xenoRefGene,212 clicking HLTOGAannotvHg38v1,294 uniprot,1633 clinical refSeqComposite,581 clipped nestedRepeats,224 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,411 cm refSeqComposite,1758 xenoRefGene,330 code refSeqComposite,1513 transMapEnsemblV5,621 transMapEnsemblV5,635 transMapEstV5,590 transMapEstV5,604 transMapRefSeqV5,590 transMapRefSeqV5,604 transMapRnaV5,590 transMapRnaV5,604 transMapV5,696 transMapV5,710 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding HLTOGAannotvHg38v1,113 HLTOGAannotvHg38v1,149 refSeqComposite,1080 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,210 codon genscan,100 genscan,122 mrna,329 mrna,354 refSeqComposite,716 refSeqComposite,810 refSeqComposite,817 refSeqComposite,832 refSeqComposite,862 transMapEnsemblV5,113 transMapEstV5,82 transMapRefSeqV5,82 transMapRnaV5,82 transMapV5,188 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 refSeqComposite,837 refSeqComposite,844 xenoRefGene,163 xenoRefGene,170 cognate transMapEnsemblV5,179 transMapEstV5,148 transMapRefSeqV5,148 transMapRnaV5,148 transMapV5,254 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,643 collaborators refSeqComposite,687 collapsed nestedRepeats,173 collection refSeqComposite,31 xenoRefGene,31 color chainHg19,344 chainMm39,344 chainNetHg19,346 chainNetMm39,347 genscan,86 genscan,96 mrna,74 mrna,270 netHg19,344 netMm39,344 refSeqComposite,603 refSeqComposite,626 refSeqComposite,841 rmsk,207 xenoRefGene,56 xenoRefGene,167 color-coded HLTOGAannotvHg38v1,139 coloration gold,93 colored chainHg19,319 chainMm39,319 chainNetHg19,321 chainNetMm39,322 mrna,370 netHg19,319 netMm39,319 transMapEnsemblV5,145 transMapEstV5,114 transMapRefSeqV5,114 transMapRnaV5,114 transMapV5,220 uniprot,160 uniprot,176 coloring chainHg19,335 chainMm39,335 chainNetHg19,337 chainNetMm39,338 genscan,116 mrna,330 mrna,357 netHg19,335 netMm39,335 refSeqComposite,811 refSeqComposite,818 refSeqComposite,856 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors refSeqComposite,833 xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 refSeqComposite,1423 refSeqComposite,1434 columns transMapEnsemblV5,550 transMapEstV5,519 transMapRefSeqV5,519 transMapRnaV5,519 transMapV5,625 combination mrna,232 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1544 refSeqComposite,1608 transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainHg19,10 chainMm39,10 chainNetHg19,12 chainNetHg19Viewchain,11 chainNetHg19Viewnet,11 chainNetMm39,13 chainNetMm39Viewchain,11 chainNetMm39Viewnet,11 netHg19,10 netMm39,10 transMapEnsemblV5,741 transMapEnsemblV5,796 transMapEstV5,710 transMapEstV5,765 transMapRefSeqV5,710 transMapRefSeqV5,765 transMapRnaV5,710 transMapRnaV5,765 transMapV5,816 transMapV5,871 compare mrna,339 refSeqComposite,827 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,153 compared transMapV5,153 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1509 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,692 uniprot,1771 complete genscan,213 completely refSeqComposite,809 uniprot,1464 xenoRefGene,135 complex chainHg19,161 chainMm39,161 chainNetHg19,163 chainNetMm39,164 netHg19,161 netMm39,161 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,148 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,809 transMapEstV5,778 transMapRefSeqV5,778 transMapRnaV5,778 transMapV5,884 computational genscan,196 uniprot,51 computed transMapEnsemblV5,226 transMapEstV5,195 transMapRefSeqV5,195 transMapRnaV5,195 transMapV5,301 comstock transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 concerning refSeqComposite,125 conditional augustusGene,118 configuration HLTOGAannotvHg38v1,131 chainHg19,308 chainMm39,308 chainNetHg19,310 chainNetMm39,311 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 mrna,27 nestedRepeats,114 netHg19,308 netMm39,308 refSeqComposite,143 rmsk,138 transMapEnsemblV5,94 transMapEstV5,63 transMapRefSeqV5,63 transMapRnaV5,63 transMapV5,169 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,44 configured gc5BaseBw,42 mrna,326 refSeqComposite,726 transMapEnsemblV5,110 transMapEstV5,79 transMapRefSeqV5,79 transMapRnaV5,79 transMapV5,185 xenoRefGene,87 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1214 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult mrna,163 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainHg19,883 chainMm39,883 chainNetHg19,885 chainNetMm39,886 netHg19,883 netMm39,883 refSeqComposite,1138 containing refSeqComposite,1653 transMapEnsemblV5,545 transMapEstV5,514 transMapRefSeqV5,514 transMapRnaV5,514 transMapV5,620 contains gap,117 mrna,188 refSeqComposite,151 refSeqComposite,868 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,140 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,81 contigs gap,84 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,730 xenoRefGene,90 convenience uniprot,404 conventions HLTOGAannotvHg38v1,129 chainHg19,306 chainMm39,306 chainNetHg19,308 chainNetMm39,309 genscan,62 genscan,70 mrna,25 mrna,33 nestedRepeats,112 netHg19,306 netMm39,306 refSeqComposite,141 refSeqComposite,451 refSeqComposite,597 rmsk,136 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEstV5,61 transMapEstV5,69 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRnaV5,61 transMapRnaV5,69 transMapV5,167 transMapV5,175 uniprot,447 xenoRefGene,42 xenoRefGene,50 converted chainHg19,598 chainMm39,598 chainNetHg19,600 chainNetMm39,601 netHg19,598 netMm39,598 refSeqComposite,1170 refSeqComposite,1583 uniprot,1477 uniprot,1760 coordinates refSeqComposite,36 refSeqComposite,67 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refSeqComposite,120 corresponding transMapEnsemblV5,257 transMapEstV5,226 transMapRefSeqV5,226 transMapRnaV5,226 transMapV5,332 corresponds mrna,171 could refSeqComposite,965 refSeqComposite,1540 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,131 counts gold,142 coverage uniprot,1485 covered chainHg19,806 chainMm39,806 chainNetHg19,808 chainNetMm39,809 gap,24 gold,26 netHg19,806 netMm39,806 cow transMapEnsemblV5,448 transMapEstV5,417 transMapRefSeqV5,417 transMapRnaV5,417 transMapV5,523 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,309 windowmaskerSdust,48 created chainHg19,981 chainMm39,981 chainNetHg19,983 chainNetMm39,984 microsat,89 netHg19,981 netMm39,981 refSeqComposite,101 refSeqComposite,1149 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainHg19,631 chainMm39,631 chainNetHg19,633 chainNetMm39,634 netHg19,631 netMm39,631 credits HLTOGAannotvHg38v1,314 augustusGene,247 chainHg19,907 chainMm39,907 chainNetHg19,909 chainNetMm39,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 gc5BaseBw,71 genscan,169 microsat,104 mrna,437 nestedRepeats,302 netHg19,907 netMm39,907 refSeqComposite,1706 rmsk,325 simpleRepeat,66 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 ucscToINSDC,42 uniprot,1938 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 mrna,246 mrna,264 mrna,302 mrna,320 transMapEnsemblV5,356 transMapEstV5,325 transMapRefSeqV5,325 transMapRnaV5,325 transMapV5,431 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainHg19,957 chainHg19,1002 chainMm39,957 chainMm39,1002 chainNetHg19,959 chainNetHg19,1004 chainNetMm39,960 chainNetMm39,1005 netHg19,957 netHg19,1002 netMm39,957 netMm39,1002 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,87 refSeqComposite,201 refSeqComposite,209 refSeqComposite,250 refSeqComposite,314 refSeqComposite,399 refSeqComposite,421 refSeqComposite,468 refSeqComposite,519 refSeqComposite,552 refSeqComposite,587 refSeqComposite,1408 refSeqComposite,1668 refSeqComposite,1720 refSeqComposite,1798 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current mrna,106 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,78 refSeqComposite,472 cutoff refSeqComposite,938 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d HLTOGAannotvHg38v1,341 augustusGene,293 chainHg19,1049 chainHg19,1093 chainMm39,1049 chainMm39,1093 chainNetHg19,1051 chainNetHg19,1095 chainNetMm39,1052 chainNetMm39,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 genscan,192 netHg19,1049 netHg19,1093 netMm39,1049 netMm39,1093 transMapEnsemblV5,761 transMapEnsemblV5,795 transMapEstV5,730 transMapEstV5,764 transMapRefSeqV5,730 transMapRefSeqV5,764 transMapRnaV5,730 transMapRnaV5,764 transMapV5,836 transMapV5,870 d23-6 mrna,509 d36-42 mrna,483 d501-4 refSeqComposite,1816 xenoRefGene,388 d71-5 uniprot,2005 d756-63 refSeqComposite,1782 xenoRefGene,354 da mrna,461 mrna,489 dark refSeqComposite,621 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,73 darkly mrna,47 data HLTOGAannotvHg38v1,316 cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 gap,96 gc5BaseBw,73 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 refSeqComposite,153 refSeqComposite,652 refSeqComposite,1153 refSeqComposite,1159 refSeqComposite,1285 refSeqComposite,1289 refSeqComposite,1311 refSeqComposite,1363 refSeqComposite,1648 refSeqComposite,1714 rmsk,126 rmsk,287 transMapEnsemblV5,515 transMapEnsemblV5,519 transMapEnsemblV5,533 transMapEnsemblV5,570 transMapEnsemblV5,574 transMapEnsemblV5,688 transMapEstV5,484 transMapEstV5,488 transMapEstV5,502 transMapEstV5,539 transMapEstV5,543 transMapEstV5,657 transMapRefSeqV5,484 transMapRefSeqV5,488 transMapRefSeqV5,502 transMapRefSeqV5,539 transMapRefSeqV5,543 transMapRefSeqV5,657 transMapRnaV5,484 transMapRnaV5,488 transMapRnaV5,502 transMapRnaV5,539 transMapRnaV5,543 transMapRnaV5,657 transMapV5,590 transMapV5,594 transMapV5,608 transMapV5,645 transMapV5,649 transMapV5,763 ucscToINSDC,34 ucscToINSDC,44 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,34 xenoRefGene,287 database chainHg19,973 chainMm39,973 chainNetHg19,975 chainNetMm39,976 mrna,481 mrna,507 nestedRepeats,345 netHg19,973 netMm39,973 refSeqComposite,560 refSeqComposite,1398 refSeqComposite,1780 refSeqComposite,1801 refSeqComposite,1814 rmsk,125 rmsk,368 transMapEnsemblV5,165 transMapEstV5,134 transMapRefSeqV5,134 transMapRnaV5,134 transMapV5,240 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases mrna,455 refSeqComposite,278 refSeqComposite,425 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 dataset refSeqComposite,528 david chainHg19,967 chainMm39,967 chainNetHg19,969 chainNetMm39,970 netHg19,967 netMm39,967 davis transMapEnsemblV5,724 transMapEstV5,693 transMapRefSeqV5,693 transMapRnaV5,693 transMapV5,799 de augustusGene,303 transMapEnsemblV5,771 transMapEstV5,740 transMapRefSeqV5,740 transMapRnaV5,740 transMapV5,846 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec nestedRepeats,389 nestedRepeats,411 rmsk,412 rmsk,434 transMapEnsemblV5,746 transMapEnsemblV5,812 transMapEstV5,715 transMapEstV5,781 transMapRefSeqV5,715 transMapRefSeqV5,781 transMapRnaV5,715 transMapRnaV5,781 transMapV5,821 transMapV5,887 default chainHg19,312 chainMm39,312 chainNetHg19,314 chainNetMm39,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netHg19,312 netMm39,312 refSeqComposite,762 refSeqComposite,1036 refSeqComposite,1063 uniprot,225 xenoRefGene,101 xenoRefGene,194 defined refSeqComposite,623 uniprot,305 uniprot,1387 definition gap,39 gold,41 deletion chainHg19,145 chainHg19,1054 chainMm39,145 chainMm39,1054 chainNetHg19,147 chainNetHg19,1056 chainNetMm39,148 chainNetMm39,1057 mrna,379 netHg19,145 netHg19,1054 netMm39,145 netMm39,1054 refSeqComposite,946 refSeqComposite,1042 refSeqComposite,1069 rmsk,220 deletions chainHg19,113 chainHg19,176 chainMm39,113 chainMm39,176 chainNetHg19,115 chainNetHg19,178 chainNetMm39,116 chainNetMm39,179 netHg19,113 netHg19,176 netMm39,113 netMm39,176 delivered gap,51 gold,50 dense gold,67 mrna,39 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,71 windowmaskerSdust,15 deprecated uniprot,1044 derived chainHg19,757 chainMm39,757 chainNetHg19,759 chainNetMm39,760 netHg19,757 netMm39,757 uniprot,830 described chainHg19,764 chainMm39,764 chainNetHg19,766 chainNetMm39,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netHg19,764 netMm39,764 refSeqComposite,1637 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,60 gold,59 describing refSeqComposite,254 description HLTOGAannotvHg38v1,15 augustusGene,12 chainHg19,12 chainHg19,769 chainMm39,12 chainMm39,769 chainNetHg19,14 chainNetHg19,771 chainNetMm39,15 chainNetMm39,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netHg19,12 netHg19,769 netMm39,12 netMm39,769 refSeqComposite,11 refSeqComposite,737 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,232 transMapEstV5,12 transMapEstV5,201 transMapRefSeqV5,13 transMapRefSeqV5,201 transMapRnaV5,13 transMapRnaV5,201 transMapV5,11 transMapV5,307 ucscToINSDC,13 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed refSeqComposite,1436 uniprot,1355 desired mrna,231 destination transMapEnsemblV5,414 transMapEstV5,383 transMapRefSeqV5,383 transMapRnaV5,383 transMapV5,489 destined uniprot,244 destuniq transMapEnsemblV5,433 transMapEstV5,402 transMapRefSeqV5,402 transMapRnaV5,402 transMapV5,508 detail genscan,164 detailed augustusGene,90 chainHg19,455 chainHg19,474 chainMm39,455 chainMm39,474 chainNetHg19,457 chainNetHg19,476 chainNetMm39,458 chainNetMm39,477 nestedRepeats,70 netHg19,455 netHg19,474 netMm39,455 netMm39,474 rmsk,37 uniprot,692 details refSeqComposite,94 refSeqComposite,1122 rmsk,119 transMapEnsemblV5,234 transMapEstV5,203 transMapRefSeqV5,203 transMapRnaV5,203 transMapV5,309 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,272 transMapEstV5,241 transMapRefSeqV5,241 transMapRnaV5,241 transMapV5,347 determine HLTOGAannotvHg38v1,107 transMapV5,90 determined windowmaskerSdust,19 determining chainHg19,479 chainMm39,479 chainNetHg19,481 chainNetMm39,482 netHg19,479 netMm39,479 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainHg19,914 chainHg19,949 chainHg19,995 chainMm39,914 chainMm39,949 chainMm39,995 chainNetHg19,916 chainNetHg19,951 chainNetHg19,997 chainNetMm39,917 chainNetMm39,952 chainNetMm39,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netHg19,914 netHg19,949 netHg19,995 netMm39,914 netMm39,949 netMm39,995 dfam rmsk,112 dg HLTOGAannotvHg38v1,351 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,582 diekhans augustusGene,288 transMapEnsemblV5,680 transMapEnsemblV5,713 transMapEnsemblV5,756 transMapEnsemblV5,788 transMapEstV5,649 transMapEstV5,682 transMapEstV5,725 transMapEstV5,757 transMapRefSeqV5,649 transMapRefSeqV5,682 transMapRefSeqV5,725 transMapRefSeqV5,757 transMapRnaV5,649 transMapRnaV5,682 transMapRnaV5,725 transMapRnaV5,757 transMapV5,755 transMapV5,788 transMapV5,831 transMapV5,863 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ refSeqComposite,287 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,63 refSeqComposite,459 refSeqComposite,888 refSeqComposite,957 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainHg19,554 chainMm39,554 chainNetHg19,556 chainNetMm39,557 gc5BaseBw,50 genscan,54 netHg19,554 netMm39,554 refSeqComposite,98 refSeqComposite,133 refSeqComposite,870 rmsk,149 uniprot,634 differing refSeqComposite,152 difficult transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,456 refSeqComposite,866 refSeqComposite,1196 refSeqComposite,1370 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 uniprot,993 directory refSeqComposite,1526 refSeqComposite,1575 refSeqComposite,1595 rmsk,134 discarded chainHg19,683 chainMm39,683 chainNetHg19,685 chainNetMm39,686 netHg19,683 netMm39,683 refSeqComposite,1243 transMapEnsemblV5,380 transMapEstV5,349 transMapRefSeqV5,349 transMapRnaV5,349 transMapV5,455 xenoRefGene,235 discovery transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display HLTOGAannotvHg38v1,128 chainHg19,237 chainHg19,305 chainHg19,350 chainHg19,380 chainHg19,439 chainHg19,468 chainHg19,497 chainHg19,971 chainMm39,237 chainMm39,305 chainMm39,350 chainMm39,380 chainMm39,439 chainMm39,468 chainMm39,497 chainMm39,971 chainNetHg19,239 chainNetHg19,307 chainNetHg19,352 chainNetHg19,382 chainNetHg19,441 chainNetHg19,470 chainNetHg19,499 chainNetHg19,973 chainNetMm39,240 chainNetMm39,308 chainNetMm39,353 chainNetMm39,383 chainNetMm39,442 chainNetMm39,471 chainNetMm39,500 chainNetMm39,974 genscan,61 genscan,69 genscan,104 gold,130 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netHg19,237 netHg19,305 netHg19,350 netHg19,380 netHg19,439 netHg19,468 netHg19,497 netHg19,971 netMm39,237 netMm39,305 netMm39,350 netMm39,380 netMm39,439 netMm39,468 netMm39,497 netMm39,971 refSeqComposite,140 refSeqComposite,450 refSeqComposite,596 refSeqComposite,717 refSeqComposite,775 refSeqComposite,831 refSeqComposite,1179 refSeqComposite,1442 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,91 transMapEnsemblV5,99 transMapEnsemblV5,112 transMapEstV5,60 transMapEstV5,68 transMapEstV5,81 transMapRefSeqV5,60 transMapRefSeqV5,68 transMapRefSeqV5,81 transMapRnaV5,60 transMapRnaV5,68 transMapRnaV5,81 transMapV5,166 transMapV5,174 transMapV5,187 uniprot,446 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainHg19,416 chainHg19,513 chainHg19,688 chainMm39,416 chainMm39,513 chainMm39,688 chainNetHg19,418 chainNetHg19,515 chainNetHg19,690 chainNetMm39,419 chainNetMm39,516 chainNetMm39,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 nestedRepeats,124 nestedRepeats,217 netHg19,416 netHg19,513 netHg19,688 netMm39,416 netMm39,513 netMm39,688 refSeqComposite,1115 xenoRefGene,202 displays chainHg19,120 chainMm39,120 chainNetHg19,122 chainNetMm39,123 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netHg19,120 netMm39,120 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant transMapEnsemblV5,268 transMapEstV5,237 transMapRefSeqV5,237 transMapRnaV5,237 transMapV5,63 transMapV5,343 distinguish HLTOGAannotvHg38v1,92 cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainHg19,906 chainMm39,906 chainNetHg19,908 chainNetMm39,909 nestedRepeats,212 netHg19,906 netMm39,906 transMapV5,151 divided uniprot,56 dj mrna,469 mrna,493 dl mrna,497 dna chainHg19,1015 chainMm39,1015 chainNetHg19,1017 chainNetMm39,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netHg19,1015 netMm39,1015 refSeqComposite,1081 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,389 transMapEnsemblV5,317 transMapEstV5,286 transMapRefSeqV5,286 transMapRnaV5,286 transMapV5,392 uniprot,168 uniprot,1129 doc rmsk,132 document gap,57 gold,56 documentation gap,29 gold,31 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainHg19,128 chainHg19,157 chainMm39,128 chainMm39,157 chainNetHg19,130 chainNetHg19,159 chainNetMm39,131 chainNetMm39,160 netHg19,128 netHg19,157 netMm39,128 netMm39,157 refSeqComposite,1016 double-lined chainHg19,217 chainMm39,217 chainNetHg19,219 chainNetMm39,220 netHg19,217 netMm39,217 double-sided chainHg19,102 chainMm39,102 chainNetHg19,104 chainNetMm39,105 netHg19,102 netMm39,102 download refSeqComposite,1561 refSeqComposite,1704 transMapEnsemblV5,557 transMapEstV5,526 transMapRefSeqV5,526 transMapRnaV5,526 transMapV5,632 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1162 refSeqComposite,1326 refSeqComposite,1515 transMapEnsemblV5,554 transMapEnsemblV5,623 transMapEstV5,523 transMapEstV5,592 transMapRefSeqV5,523 transMapRefSeqV5,592 transMapRnaV5,523 transMapRnaV5,592 transMapV5,629 transMapV5,698 ucscToINSDC,36 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1787 downloads refSeqComposite,1329 refSeqComposite,1345 refSeqComposite,1484 refSeqComposite,1574 refSeqComposite,1599 refSeqComposite,1678 rmsk,76 uniprot,1698 downstream refSeqComposite,1453 dr refSeqComposite,1792 xenoRefGene,364 drawn gap,107 gold,126 draws uniprot,1532 drosophila augustusGene,213 due HLTOGAannotvHg38v1,207 chainHg19,142 chainHg19,210 chainHg19,222 chainMm39,142 chainMm39,210 chainMm39,222 chainNetHg19,144 chainNetHg19,212 chainNetHg19,224 chainNetMm39,145 chainNetMm39,213 chainNetMm39,225 netHg19,142 netHg19,210 netHg19,222 netMm39,142 netMm39,210 netMm39,222 refSeqComposite,975 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainHg19,1053 chainMm39,1053 chainNetHg19,1055 chainNetMm39,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netHg19,1053 netMm39,1053 duplications transMapEnsemblV5,310 transMapEnsemblV5,507 transMapEstV5,279 transMapEstV5,476 transMapRefSeqV5,279 transMapRefSeqV5,476 transMapRnaV5,279 transMapRnaV5,476 transMapV5,385 transMapV5,582 during chainHg19,811 chainMm39,811 chainNetHg19,813 chainNetMm39,814 netHg19,811 netMm39,811 dynamic chainHg19,644 chainMm39,644 chainNetHg19,646 chainNetMm39,647 netHg19,644 netMm39,644 e HLTOGAannotvHg38v1,339 uniprot,2021 e.g chainHg19,367 chainMm39,367 chainNetHg19,369 chainNetMm39,370 netHg19,367 netMm39,367 refSeqComposite,1132 uniprot,398 uniprot,467 e247 transMapEnsemblV5,815 transMapEstV5,784 transMapRefSeqV5,784 transMapRnaV5,784 transMapV5,890 eabn3107 HLTOGAannotvHg38v1,370 each HLTOGAannotvHg38v1,132 chainHg19,255 chainMm39,255 chainNetHg19,257 chainNetMm39,258 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 genscan,99 mrna,160 nestedRepeats,120 netHg19,255 netMm39,255 refSeqComposite,538 refSeqComposite,1425 transMapEnsemblV5,386 transMapEnsemblV5,400 transMapEnsemblV5,409 transMapEnsemblV5,428 transMapEstV5,355 transMapEstV5,369 transMapEstV5,378 transMapEstV5,397 transMapRefSeqV5,355 transMapRefSeqV5,369 transMapRefSeqV5,378 transMapRefSeqV5,397 transMapRnaV5,355 transMapRnaV5,369 transMapRnaV5,378 transMapRnaV5,397 transMapV5,461 transMapV5,475 transMapV5,484 transMapV5,503 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 either chainHg19,125 chainMm39,125 chainNetHg19,127 chainNetMm39,128 gap,86 netHg19,125 netMm39,125 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elsevier genscan,202 em windowmaskerSdust,93 emerged chainHg19,817 chainMm39,817 chainNetHg19,819 chainNetMm39,820 netHg19,817 netMm39,817 encode HLTOGAannotvHg38v1,161 HLTOGAannotvHg38v1,191 HLTOGAannotvHg38v1,267 HLTOGAannotvHg38v1,290 end refSeqComposite,1050 refSeqComposite,1556 rmsk,245 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,126 uniprot,210 uniprot,1823 enough HLTOGAannotvHg38v1,254 refSeqComposite,1024 ensembl transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,589 transMapEnsemblV5,705 transMapEstV5,558 transMapEstV5,674 transMapRefSeqV5,558 transMapRefSeqV5,674 transMapRnaV5,558 transMapRnaV5,674 transMapV5,664 transMapV5,780 uniprot,731 uniprot,834 uniprot,865 ensure transMapEnsemblV5,382 transMapEstV5,351 transMapRefSeqV5,351 transMapRnaV5,351 transMapV5,457 enter chainHg19,361 chainMm39,361 chainNetHg19,363 chainNetMm39,364 netHg19,361 netMm39,361 entered mrna,197 mrna,207 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1354 ermolaeva refSeqComposite,1755 xenoRefGene,327 errors refSeqComposite,949 especially mrna,98 est mrna,9 refSeqComposite,263 refSeqComposite,363 transMapEnsemblV5,686 transMapEstV5,4 transMapEstV5,18 transMapEstV5,655 transMapRefSeqV5,655 transMapRnaV5,655 transMapV5,761 established refSeqComposite,684 ests transMapEnsemblV5,176 transMapEnsemblV5,598 transMapEstV5,2 transMapEstV5,145 transMapEstV5,567 transMapRefSeqV5,145 transMapRefSeqV5,567 transMapRnaV5,145 transMapRnaV5,567 transMapV5,251 transMapV5,673 et HLTOGAannotvHg38v1,354 cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 refSeqComposite,1765 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 xenoRefGene,337 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even uniprot,136 every chainHg19,270 chainMm39,270 chainNetHg19,272 chainNetMm39,273 netHg19,270 netMm39,270 refSeqComposite,475 uniprot,1571 evidence HLTOGAannotvHg38v1,196 HLTOGAannotvHg38v1,250 HLTOGAannotvHg38v1,283 refSeqComposite,260 refSeqComposite,275 evolution chainHg19,1050 chainMm39,1050 chainNetHg19,1052 chainNetMm39,1053 netHg19,1050 netMm39,1050 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew mrna,473 ewing transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 exact uniprot,1622 uniprot,1747 example mrna,129 mrna,182 refSeqComposite,1530 rmsk,256 transMapEnsemblV5,445 transMapEnsemblV5,657 transMapEstV5,414 transMapEstV5,626 transMapRefSeqV5,414 transMapRefSeqV5,626 transMapRnaV5,414 transMapRnaV5,626 transMapV5,96 transMapV5,520 transMapV5,732 uniprot,1450 uniprot,1811 uniprot,1901 examples refSeqComposite,405 except refSeqComposite,40 uniprot,508 exclude mrna,77 mrna,282 mrna,288 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exhibits HLTOGAannotvHg38v1,154 HLTOGAannotvHg38v1,183 HLTOGAannotvHg38v1,230 exist chainHg19,400 chainMm39,400 chainNetHg19,402 chainNetMm39,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netHg19,400 netMm39,400 refSeqComposite,292 exists refSeqComposite,329 exon HLTOGAannotvHg38v1,312 augustusGene,86 exons HLTOGAannotvHg38v1,114 chainHg19,48 chainMm39,48 chainNetHg19,50 chainNetMm39,51 genscan,44 netHg19,48 netMm39,48 transMapEnsemblV5,739 transMapEstV5,708 transMapRefSeqV5,708 transMapRnaV5,708 transMapV5,814 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,661 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense transMapEnsemblV5,295 transMapEstV5,264 transMapRefSeqV5,264 transMapRnaV5,264 transMapV5,370 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 refSeqComposite,1302 uniprot,1716 expressed mrna,137 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,549 transMapEstV5,518 transMapRefSeqV5,518 transMapRnaV5,518 transMapV5,624 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1532 extracted nestedRepeats,23 f chainHg19,1023 chainMm39,1023 chainNetHg19,1025 chainNetMm39,1026 gold,154 netHg19,1023 netMm39,1023 refSeqComposite,1752 xenoRefGene,324 facilitate genscan,106 uniprot,1852 factor mrna,174 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 genscan,60 nestedRepeats,298 refSeqComposite,139 rmsk,321 transMapEnsemblV5,576 transMapEstV5,545 transMapRefSeqV5,545 transMapRnaV5,545 transMapV5,651 uniprot,1839 far uniprot,599 farrell refSeqComposite,1757 xenoRefGene,329 fasta refSeqComposite,1658 feature chainHg19,241 chainMm39,241 chainNetHg19,243 chainNetMm39,244 genscan,129 mrna,332 netHg19,241 netMm39,241 refSeqComposite,819 refSeqComposite,852 transMapEnsemblV5,116 transMapEstV5,85 transMapRefSeqV5,85 transMapRnaV5,85 transMapV5,191 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,145 xenoRefGene,178 features refSeqComposite,720 transMapEnsemblV5,651 transMapEstV5,620 transMapRefSeqV5,620 transMapRnaV5,620 transMapV5,726 uniprot,694 uniprot,1805 xenoRefGene,81 feb chainHg19,4 chainHg19,66 chainHg19,300 chainNetHg19,4 chainNetHg19,68 chainNetHg19,302 chainNetHg19Viewchain,3 chainNetHg19Viewnet,3 netHg19,4 netHg19,66 netHg19,300 fed chainHg19,610 chainMm39,610 chainNetHg19,612 chainNetMm39,613 netHg19,610 netMm39,610 feedback refSeqComposite,106 uniprot,1445 uniprot,1961 fewer transMapV5,159 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,50 gap,66 gold,49 gold,65 refSeqComposite,1167 refSeqComposite,1376 refSeqComposite,1387 refSeqComposite,1652 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files refSeqComposite,1160 refSeqComposite,1477 transMapEnsemblV5,544 transMapEnsemblV5,578 transMapEstV5,513 transMapEstV5,547 transMapRefSeqV5,513 transMapRefSeqV5,547 transMapRnaV5,513 transMapRnaV5,547 transMapV5,619 transMapV5,653 uniprot,1863 fill chainHg19,841 chainHg19,874 chainMm39,841 chainMm39,874 chainNetHg19,843 chainNetHg19,876 chainNetMm39,844 chainNetMm39,877 netHg19,841 netHg19,874 netMm39,841 netMm39,874 filled chainHg19,409 chainHg19,428 chainHg19,823 chainHg19,896 chainMm39,409 chainMm39,428 chainMm39,823 chainMm39,896 chainNetHg19,411 chainNetHg19,430 chainNetHg19,825 chainNetHg19,898 chainNetMm39,412 chainNetMm39,431 chainNetMm39,826 chainNetMm39,899 netHg19,409 netHg19,428 netHg19,823 netHg19,896 netMm39,409 netMm39,428 netMm39,823 netMm39,896 filter chainHg19,373 chainMm39,373 chainNetHg19,375 chainNetMm39,376 genscan,82 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netHg19,373 netMm39,373 uniprot,187 uniprot,664 filtered mrna,284 transMapEnsemblV5,77 transMapEnsemblV5,349 transMapEstV5,46 transMapEstV5,318 transMapRefSeqV5,46 transMapRefSeqV5,318 transMapRnaV5,46 transMapRnaV5,318 transMapV5,45 transMapV5,424 uniprot,1480 uniprot,1499 filtering mrna,223 transMapEnsemblV5,236 transMapEnsemblV5,304 transMapEstV5,205 transMapEstV5,273 transMapRefSeqV5,205 transMapRefSeqV5,273 transMapRnaV5,205 transMapRnaV5,273 transMapV5,311 transMapV5,379 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainHg19,653 chainMm39,653 chainNetHg19,655 chainNetMm39,656 netHg19,653 netMm39,653 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainHg19,280 chainMm39,280 chainNetHg19,282 chainNetMm39,283 netHg19,280 netMm39,280 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 finds transMapV5,158 finger uniprot,327 finished gold,156 transMapEnsemblV5,360 transMapEstV5,329 transMapRefSeqV5,329 transMapRnaV5,329 transMapV5,435 first chainHg19,781 chainMm39,781 chainNetHg19,783 chainNetMm39,784 netHg19,781 netMm39,781 refSeqComposite,1422 uniprot,70 fish augustusGene,201 fit chainHg19,801 chainMm39,801 chainNetHg19,803 chainNetMm39,804 nestedRepeats,175 netHg19,801 netMm39,801 refSeqComposite,391 five refSeqComposite,869 refSeqComposite,885 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,594 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainHg19,662 chainMm39,662 chainNetHg19,664 chainNetMm39,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,119 genscan,81 netHg19,662 netMm39,662 refSeqComposite,448 refSeqComposite,1543 transMapEnsemblV5,586 transMapEstV5,555 transMapRefSeqV5,555 transMapRnaV5,555 transMapV5,661 windowmaskerSdust,56 follows genscan,67 mrna,30 refSeqComposite,891 refSeqComposite,1401 transMapEnsemblV5,97 transMapEnsemblV5,214 transMapEstV5,66 transMapEstV5,183 transMapRefSeqV5,66 transMapRefSeqV5,183 transMapRnaV5,66 transMapRnaV5,183 transMapV5,172 transMapV5,289 xenoRefGene,47 for HLTOGAannotvHg38v1,55 HLTOGAannotvHg38v1,59 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainHg19,254 chainHg19,269 chainHg19,279 chainHg19,286 chainHg19,486 chainMm39,254 chainMm39,269 chainMm39,279 chainMm39,286 chainMm39,486 chainNetHg19,256 chainNetHg19,271 chainNetHg19,281 chainNetHg19,288 chainNetHg19,488 chainNetMm39,257 chainNetMm39,272 chainNetMm39,282 chainNetMm39,289 chainNetMm39,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netHg19,254 netHg19,269 netHg19,279 netHg19,286 netHg19,486 netMm39,254 netMm39,269 netMm39,279 netMm39,286 netMm39,486 refSeqComposite,41 refSeqComposite,73 refSeqComposite,92 refSeqComposite,107 refSeqComposite,123 refSeqComposite,128 refSeqComposite,235 refSeqComposite,244 refSeqComposite,330 refSeqComposite,394 refSeqComposite,452 refSeqComposite,474 refSeqComposite,537 refSeqComposite,598 refSeqComposite,719 refSeqComposite,743 refSeqComposite,847 refSeqComposite,1178 refSeqComposite,1290 refSeqComposite,1331 refSeqComposite,1441 refSeqComposite,1520 refSeqComposite,1529 refSeqComposite,1660 refSeqComposite,1688 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,101 transMapEnsemblV5,129 transMapEnsemblV5,146 transMapEnsemblV5,189 transMapEnsemblV5,215 transMapEnsemblV5,233 transMapEnsemblV5,264 transMapEnsemblV5,266 transMapEnsemblV5,284 transMapEnsemblV5,288 transMapEnsemblV5,385 transMapEnsemblV5,399 transMapEnsemblV5,408 transMapEnsemblV5,444 transMapEnsemblV5,520 transMapEnsemblV5,535 transMapEnsemblV5,564 transMapEnsemblV5,628 transMapEnsemblV5,632 transMapEnsemblV5,656 transMapEnsemblV5,799 transMapEstV5,36 transMapEstV5,70 transMapEstV5,98 transMapEstV5,115 transMapEstV5,158 transMapEstV5,184 transMapEstV5,202 transMapEstV5,233 transMapEstV5,235 transMapEstV5,253 transMapEstV5,257 transMapEstV5,354 transMapEstV5,368 transMapEstV5,377 transMapEstV5,413 transMapEstV5,489 transMapEstV5,504 transMapEstV5,533 transMapEstV5,597 transMapEstV5,601 transMapEstV5,625 transMapEstV5,768 transMapRefSeqV5,36 transMapRefSeqV5,70 transMapRefSeqV5,98 transMapRefSeqV5,115 transMapRefSeqV5,158 transMapRefSeqV5,184 transMapRefSeqV5,202 transMapRefSeqV5,233 transMapRefSeqV5,235 transMapRefSeqV5,253 transMapRefSeqV5,257 transMapRefSeqV5,354 transMapRefSeqV5,368 transMapRefSeqV5,377 transMapRefSeqV5,413 transMapRefSeqV5,489 transMapRefSeqV5,504 transMapRefSeqV5,533 transMapRefSeqV5,597 transMapRefSeqV5,601 transMapRefSeqV5,625 transMapRefSeqV5,768 transMapRnaV5,36 transMapRnaV5,70 transMapRnaV5,98 transMapRnaV5,115 transMapRnaV5,158 transMapRnaV5,184 transMapRnaV5,202 transMapRnaV5,233 transMapRnaV5,235 transMapRnaV5,253 transMapRnaV5,257 transMapRnaV5,354 transMapRnaV5,368 transMapRnaV5,377 transMapRnaV5,413 transMapRnaV5,489 transMapRnaV5,504 transMapRnaV5,533 transMapRnaV5,597 transMapRnaV5,601 transMapRnaV5,625 transMapRnaV5,768 transMapV5,35 transMapV5,61 transMapV5,95 transMapV5,97 transMapV5,150 transMapV5,176 transMapV5,204 transMapV5,221 transMapV5,264 transMapV5,290 transMapV5,308 transMapV5,339 transMapV5,341 transMapV5,359 transMapV5,363 transMapV5,460 transMapV5,474 transMapV5,483 transMapV5,519 transMapV5,595 transMapV5,610 transMapV5,639 transMapV5,703 transMapV5,707 transMapV5,731 transMapV5,874 ucscToINSDC,45 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 form uniprot,1665 format chainHg19,601 chainMm39,601 chainNetHg19,603 chainNetMm39,604 gap,62 gold,61 netHg19,601 netMm39,601 refSeqComposite,1168 refSeqComposite,1357 refSeqComposite,1377 refSeqComposite,1403 refSeqComposite,1417 refSeqComposite,1564 refSeqComposite,1578 refSeqComposite,1586 refSeqComposite,1659 transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 formats refSeqComposite,1177 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainHg19,435 chainMm39,435 chainNetHg19,437 chainNetMm39,438 netHg19,435 netMm39,435 found augustusGene,100 gold,137 mrna,412 refSeqComposite,1192 refSeqComposite,1390 refSeqComposite,1675 refSeqComposite,1700 transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainHg19,503 chainMm39,503 chainNetHg19,505 chainNetMm39,506 netHg19,503 netMm39,503 fragments gold,4 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from HLTOGAannotvHg38v1,21 HLTOGAannotvHg38v1,94 HLTOGAannotvHg38v1,330 augustusGene,19 chainHg19,173 chainHg19,298 chainHg19,555 chainHg19,577 chainHg19,758 chainHg19,931 chainHg19,963 chainMm39,173 chainMm39,298 chainMm39,555 chainMm39,577 chainMm39,758 chainMm39,931 chainMm39,963 chainNetHg19,175 chainNetHg19,300 chainNetHg19,557 chainNetHg19,579 chainNetHg19,760 chainNetHg19,933 chainNetHg19,965 chainNetMm39,176 chainNetMm39,301 chainNetMm39,558 chainNetMm39,580 chainNetMm39,761 chainNetMm39,934 chainNetMm39,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 gap,47 genscan,15 gold,3 gold,46 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netHg19,173 netHg19,298 netHg19,555 netHg19,577 netHg19,758 netHg19,931 netHg19,963 netMm39,173 netMm39,298 netMm39,555 netMm39,577 netMm39,758 netMm39,931 netMm39,963 refSeqComposite,5 refSeqComposite,25 refSeqComposite,288 refSeqComposite,294 refSeqComposite,422 refSeqComposite,482 refSeqComposite,839 refSeqComposite,1099 refSeqComposite,1154 refSeqComposite,1163 refSeqComposite,1327 refSeqComposite,1482 refSeqComposite,1510 refSeqComposite,1523 refSeqComposite,1571 refSeqComposite,1592 refSeqComposite,1606 refSeqComposite,1713 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,157 transMapEnsemblV5,555 transMapEnsemblV5,618 transMapEnsemblV5,683 transMapEstV5,27 transMapEstV5,126 transMapEstV5,524 transMapEstV5,587 transMapEstV5,652 transMapRefSeqV5,27 transMapRefSeqV5,126 transMapRefSeqV5,524 transMapRefSeqV5,587 transMapRefSeqV5,652 transMapRnaV5,27 transMapRnaV5,126 transMapRnaV5,524 transMapRnaV5,587 transMapRnaV5,652 transMapV5,26 transMapV5,111 transMapV5,232 transMapV5,630 transMapV5,693 transMapV5,758 ucscToINSDC,25 ucscToINSDC,37 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainHg19,235 chainHg19,379 chainMm39,235 chainMm39,379 chainNetHg19,237 chainNetHg19,381 chainNetMm39,238 chainNetMm39,382 nestedRepeats,118 netHg19,235 netHg19,379 netMm39,235 netMm39,379 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,265 functional HLTOGAannotvHg38v1,162 HLTOGAannotvHg38v1,192 HLTOGAannotvHg38v1,269 HLTOGAannotvHg38v1,292 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 gc5BaseBw,20 microsat,115 refSeqComposite,900 refSeqComposite,952 refSeqComposite,1076 simpleRepeat,75 g-31-125100-114 chainHg19,670 chainMm39,670 chainNetHg19,672 chainNetMm39,673 netHg19,670 netMm39,670 galgal6 HLTOGAannotvHg38v1,58 gambiae augustusGene,219 gap chainHg19,76 chainHg19,86 chainHg19,185 chainHg19,472 chainHg19,484 chainHg19,507 chainHg19,525 chainHg19,540 chainHg19,557 chainHg19,694 chainHg19,825 chainMm39,76 chainMm39,86 chainMm39,185 chainMm39,472 chainMm39,484 chainMm39,507 chainMm39,525 chainMm39,540 chainMm39,557 chainMm39,694 chainMm39,825 chainNetHg19,78 chainNetHg19,88 chainNetHg19,187 chainNetHg19,474 chainNetHg19,486 chainNetHg19,509 chainNetHg19,527 chainNetHg19,542 chainNetHg19,559 chainNetHg19,696 chainNetHg19,827 chainNetMm39,79 chainNetMm39,89 chainNetMm39,188 chainNetMm39,475 chainNetMm39,487 chainNetMm39,510 chainNetMm39,528 chainNetMm39,543 chainNetMm39,560 chainNetMm39,697 chainNetMm39,828 gap,1 gap,2 gap,90 gap,101 gap,114 mrna,366 netHg19,76 netHg19,86 netHg19,185 netHg19,472 netHg19,484 netHg19,507 netHg19,525 netHg19,540 netHg19,557 netHg19,694 netHg19,825 netMm39,76 netMm39,86 netMm39,185 netMm39,472 netMm39,484 netMm39,507 netMm39,525 netMm39,540 netMm39,557 netMm39,694 netMm39,825 refSeqComposite,926 refSeqComposite,959 refSeqComposite,1015 refSeqComposite,1017 transMapEnsemblV5,141 transMapEstV5,110 transMapRefSeqV5,110 transMapRnaV5,110 transMapV5,216 gapless chainHg19,637 chainMm39,637 chainNetHg19,639 chainNetMm39,640 netHg19,637 netMm39,637 gaps HLTOGAannotvHg38v1,210 chainHg19,82 chainHg19,93 chainHg19,104 chainHg19,138 chainHg19,162 chainHg19,207 chainHg19,218 chainHg19,399 chainHg19,421 chainHg19,448 chainHg19,880 chainHg19,886 chainMm39,82 chainMm39,93 chainMm39,104 chainMm39,138 chainMm39,162 chainMm39,207 chainMm39,218 chainMm39,399 chainMm39,421 chainMm39,448 chainMm39,880 chainMm39,886 chainNetHg19,84 chainNetHg19,95 chainNetHg19,106 chainNetHg19,140 chainNetHg19,164 chainNetHg19,209 chainNetHg19,220 chainNetHg19,401 chainNetHg19,423 chainNetHg19,450 chainNetHg19,882 chainNetHg19,888 chainNetMm39,85 chainNetMm39,96 chainNetMm39,107 chainNetMm39,141 chainNetMm39,165 chainNetMm39,210 chainNetMm39,221 chainNetMm39,402 chainNetMm39,424 chainNetMm39,451 chainNetMm39,883 chainNetMm39,889 gap,12 gap,42 gap,67 gap,123 gap,125 gold,95 netHg19,82 netHg19,93 netHg19,104 netHg19,138 netHg19,162 netHg19,207 netHg19,218 netHg19,399 netHg19,421 netHg19,448 netHg19,880 netHg19,886 netMm39,82 netMm39,93 netMm39,104 netMm39,138 netMm39,162 netMm39,207 netMm39,218 netMm39,399 netMm39,421 netMm39,448 netMm39,880 netMm39,886 refSeqComposite,929 refSeqComposite,1020 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1548 transMapEnsemblV5,661 transMapEstV5,630 transMapRefSeqV5,630 transMapRnaV5,630 transMapV5,736 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 transMapEnsemblV5,171 transMapEnsemblV5,174 transMapEstV5,16 transMapEstV5,140 transMapEstV5,143 transMapRefSeqV5,140 transMapRefSeqV5,143 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,140 transMapRnaV5,143 transMapV5,246 transMapV5,249 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,707 transMapEstV5,676 transMapRefSeqV5,676 transMapRnaV5,676 transMapV5,782 uniprot,730 gene HLTOGAannotvHg38v1,13 HLTOGAannotvHg38v1,30 HLTOGAannotvHg38v1,47 HLTOGAannotvHg38v1,357 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,108 refSeqComposite,134 refSeqComposite,410 refSeqComposite,540 refSeqComposite,558 refSeqComposite,599 refSeqComposite,767 refSeqComposite,785 refSeqComposite,797 refSeqComposite,828 refSeqComposite,857 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,390 transMapEnsemblV5,773 transMapEstV5,10 transMapEstV5,359 transMapEstV5,742 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,359 transMapRefSeqV5,742 transMapRnaV5,11 transMapRnaV5,359 transMapRnaV5,742 transMapV5,9 transMapV5,17 transMapV5,465 transMapV5,848 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-inactivating HLTOGAannotvHg38v1,156 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred refSeqComposite,1173 refSeqComposite,1402 refSeqComposite,1577 genepredtogtf refSeqComposite,1589 refSeqComposite,1612 refSeqComposite,1619 generally rmsk,72 uniprot,248 generate nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 nestedRepeats,282 refSeqComposite,481 refSeqComposite,1199 refSeqComposite,1715 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes HLTOGAannotvHg38v1,11 HLTOGAannotvHg38v1,36 HLTOGAannotvHg38v1,101 augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 genscan,2 genscan,6 genscan,59 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,23 refSeqComposite,138 refSeqComposite,237 refSeqComposite,431 refSeqComposite,506 refSeqComposite,1211 refSeqComposite,1222 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,170 transMapEnsemblV5,184 transMapEnsemblV5,290 transMapEnsemblV5,803 transMapEstV5,8 transMapEstV5,57 transMapEstV5,139 transMapEstV5,153 transMapEstV5,259 transMapEstV5,772 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,139 transMapRefSeqV5,153 transMapRefSeqV5,259 transMapRefSeqV5,772 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,139 transMapRnaV5,153 transMapRnaV5,259 transMapRnaV5,772 transMapV5,7 transMapV5,58 transMapV5,72 transMapV5,245 transMapV5,259 transMapV5,365 transMapV5,878 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome HLTOGAannotvHg38v1,22 HLTOGAannotvHg38v1,64 HLTOGAannotvHg38v1,71 augustusGene,31 chainHg19,19 chainHg19,73 chainHg19,202 chainHg19,275 chainHg19,288 chainHg19,779 chainHg19,1100 chainMm39,19 chainMm39,73 chainMm39,202 chainMm39,275 chainMm39,288 chainMm39,779 chainMm39,1100 chainNetHg19,21 chainNetHg19,75 chainNetHg19,204 chainNetHg19,277 chainNetHg19,290 chainNetHg19,781 chainNetHg19,1102 chainNetMm39,22 chainNetMm39,76 chainNetMm39,205 chainNetMm39,278 chainNetMm39,291 chainNetMm39,782 chainNetMm39,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 gap,18 gap,20 gold,20 gold,22 gold,150 mrna,23 mrna,391 mrna,521 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netHg19,19 netHg19,73 netHg19,202 netHg19,275 netHg19,288 netHg19,779 netHg19,1100 netMm39,19 netMm39,73 netMm39,202 netMm39,275 netMm39,288 netMm39,779 netMm39,1100 refSeqComposite,56 refSeqComposite,290 refSeqComposite,298 refSeqComposite,307 refSeqComposite,325 refSeqComposite,369 refSeqComposite,442 refSeqComposite,464 refSeqComposite,496 refSeqComposite,877 refSeqComposite,924 refSeqComposite,974 refSeqComposite,1060 refSeqComposite,1073 refSeqComposite,1107 refSeqComposite,1120 refSeqComposite,1182 refSeqComposite,1231 refSeqComposite,1445 refSeqComposite,1734 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,163 transMapEnsemblV5,180 transMapEnsemblV5,204 transMapEnsemblV5,333 transMapEnsemblV5,344 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,472 transMapEnsemblV5,605 transMapEnsemblV5,743 transMapEstV5,34 transMapEstV5,132 transMapEstV5,149 transMapEstV5,173 transMapEstV5,302 transMapEstV5,313 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,441 transMapEstV5,574 transMapEstV5,712 transMapRefSeqV5,34 transMapRefSeqV5,132 transMapRefSeqV5,149 transMapRefSeqV5,173 transMapRefSeqV5,302 transMapRefSeqV5,313 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,441 transMapRefSeqV5,574 transMapRefSeqV5,712 transMapRnaV5,34 transMapRnaV5,132 transMapRnaV5,149 transMapRnaV5,173 transMapRnaV5,302 transMapRnaV5,313 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,441 transMapRnaV5,574 transMapRnaV5,712 transMapV5,33 transMapV5,84 transMapV5,238 transMapV5,255 transMapV5,279 transMapV5,408 transMapV5,419 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,547 transMapV5,680 transMapV5,818 ucscToINSDC,18 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,223 xenoRefGene,306 genome-wide refSeqComposite,1497 genome.bed uniprot,1935 uniprot,1937 genomes chainHg19,25 chainHg19,582 chainHg19,1062 chainMm39,25 chainMm39,582 chainMm39,1062 chainNetHg19,27 chainNetHg19,584 chainNetHg19,1064 chainNetMm39,28 chainNetMm39,585 chainNetMm39,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netHg19,25 netHg19,582 netHg19,1062 netMm39,25 netMm39,582 netMm39,1062 refSeqComposite,569 refSeqComposite,1803 rmsk,392 rmsk,406 transMapEnsemblV5,361 transMapEnsemblV5,369 transMapEstV5,330 transMapEstV5,338 transMapRefSeqV5,330 transMapRefSeqV5,338 transMapRnaV5,330 transMapRnaV5,338 transMapV5,436 transMapV5,444 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,375 genomic HLTOGAannotvHg38v1,122 chainHg19,491 chainHg19,1014 chainHg19,1030 chainMm39,491 chainMm39,1014 chainMm39,1030 chainNetHg19,493 chainNetHg19,1016 chainNetHg19,1032 chainNetMm39,494 chainNetMm39,1017 chainNetMm39,1033 genscan,92 genscan,218 mrna,343 mrna,433 netHg19,491 netHg19,1014 netHg19,1030 netMm39,491 netMm39,1014 netMm39,1030 refSeqComposite,836 refSeqComposite,904 refSeqComposite,928 refSeqComposite,1019 refSeqComposite,1077 refSeqComposite,1281 transMapEnsemblV5,127 transMapEstV5,96 transMapRefSeqV5,96 transMapRnaV5,96 transMapV5,202 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainHg19,11 chainMm39,11 chainNetHg19,13 chainNetHg19Viewchain,12 chainNetHg19Viewnet,12 chainNetMm39,14 chainNetMm39Viewchain,12 chainNetMm39Viewnet,12 netHg19,11 netMm39,11 transMapEnsemblV5,742 transMapEnsemblV5,797 transMapEstV5,711 transMapEstV5,766 transMapRefSeqV5,711 transMapRefSeqV5,766 transMapRnaV5,711 transMapRnaV5,766 transMapV5,817 transMapV5,872 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 gertz windowmaskerSdust,92 gff refSeqComposite,1166 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 github.com HLTOGAannotvHg38v1,331 give transMapEnsemblV5,437 transMapEstV5,406 transMapRefSeqV5,406 transMapRnaV5,406 transMapV5,512 given refSeqComposite,1537 transMapEnsemblV5,481 transMapEnsemblV5,654 transMapEstV5,450 transMapEstV5,623 transMapRefSeqV5,450 transMapRefSeqV5,623 transMapRnaV5,450 transMapRnaV5,623 transMapV5,556 transMapV5,729 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,374 go genscan,113 mrna,351 mrna,374 refSeqComposite,853 uniprot,1412 xenoRefGene,179 gold gold,90 gold,104 goldenpath uniprot,1907 gr refSeqComposite,1748 xenoRefGene,320 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainHg19,438 chainMm39,438 chainNetHg19,440 chainNetMm39,441 gold,129 netHg19,438 netMm39,438 rmsk,211 grch37 chainHg19,6 chainHg19,68 chainHg19,302 chainNetHg19,6 chainNetHg19,70 chainNetHg19,304 chainNetHg19Viewchain,5 chainNetHg19Viewnet,5 netHg19,6 netHg19,68 netHg19,302 grcm39 chainMm39,6 chainMm39,68 chainMm39,302 chainNetMm39,7 chainNetMm39,71 chainNetMm39,305 chainNetMm39Viewchain,5 chainNetMm39Viewnet,5 netMm39,6 netMm39,68 netMm39,302 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainHg19,629 chainMm39,629 chainNetHg19,631 chainNetMm39,632 netHg19,629 netMm39,629 refSeqComposite,387 refSeqComposite,447 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 uniprot,907 uniprot,909 uniprot,1930 gtf refSeqComposite,1563 refSeqComposite,1573 refSeqComposite,1585 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,194 transMapEstV5,163 transMapRefSeqV5,163 transMapRnaV5,163 transMapV5,269 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainHg19,933 chainHg19,1090 chainMm39,933 chainMm39,1090 chainNetHg19,935 chainNetHg19,1092 chainNetMm39,936 chainNetMm39,1093 netHg19,933 netHg19,1090 netMm39,933 netMm39,1090 harris chainHg19,1007 chainMm39,1007 chainNetHg19,1009 chainNetMm39,1010 netHg19,1007 netMm39,1007 hart refSeqComposite,1759 xenoRefGene,331 has mrna,60 nestedRepeats,246 refSeqComposite,613 refSeqComposite,634 refSeqComposite,670 refSeqComposite,682 refSeqComposite,695 refSeqComposite,814 transMapV5,145 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,66 haussler augustusGene,292 chainHg19,968 chainHg19,1048 chainHg19,1092 chainMm39,968 chainMm39,1048 chainMm39,1092 chainNetHg19,970 chainNetHg19,1050 chainNetHg19,1094 chainNetMm39,971 chainNetMm39,1051 chainNetMm39,1095 netHg19,968 netHg19,1048 netHg19,1092 netMm39,968 netMm39,1048 netMm39,1092 transMapEnsemblV5,760 transMapEnsemblV5,794 transMapEstV5,729 transMapEstV5,763 transMapRefSeqV5,729 transMapRefSeqV5,763 transMapRnaV5,729 transMapRnaV5,763 transMapV5,835 transMapV5,869 have chainHg19,567 chainMm39,567 chainNetHg19,569 chainNetMm39,570 nestedRepeats,88 netHg19,567 netMm39,567 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 mrna,406 mrna,415 refSeqComposite,1254 refSeqComposite,1263 xenoRefGene,246 xenoRefGene,255 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 gc5BaseBw,61 refSeqComposite,124 helpful mrna,88 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here refSeqComposite,990 refSeqComposite,1193 refSeqComposite,1464 refSeqComposite,1486 refSeqComposite,1680 rmsk,127 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEnsemblV5,641 transMapEstV5,105 transMapEstV5,119 transMapEstV5,610 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRefSeqV5,610 transMapRnaV5,105 transMapRnaV5,119 transMapRnaV5,610 transMapV5,211 transMapV5,225 transMapV5,716 uniprot,1795 hg.conf refSeqComposite,1635 hg19 chainHg19,7 chainHg19,69 chainHg19,303 chainNetHg19,1 chainNetHg19,7 chainNetHg19,71 chainNetHg19,305 chainNetHg19Viewchain,6 chainNetHg19Viewnet,6 netHg19,7 netHg19,69 netHg19,303 refSeqComposite,570 uniprot,847 uniprot,860 hg38 HLTOGAannotvHg38v1,3 HLTOGAannotvHg38v1,8 HLTOGAannotvHg38v1,54 refSeqComposite,514 refSeqComposite,572 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1547 transMapEnsemblV5,660 transMapEstV5,629 transMapRefSeqV5,629 transMapRnaV5,629 transMapV5,735 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,546 hgvs refSeqComposite,899 refSeqComposite,912 refSeqComposite,951 refSeqComposite,980 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1070 refSeqComposite,1090 hiatt refSeqComposite,1749 xenoRefGene,321 hidden augustusGene,324 uniprot,182 uniprot,223 hide refSeqComposite,174 uniprot,659 uniprot,667 xenoRefGene,190 hierarchy chainHg19,816 chainMm39,816 chainNetHg19,818 chainNetMm39,819 netHg19,816 netMm39,816 high gc5BaseBw,29 transMapV5,118 higher chainHg19,848 chainMm39,848 chainNetHg19,850 chainNetMm39,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netHg19,848 netMm39,848 rmsk,230 transMapV5,146 higher-level chainHg19,865 chainMm39,865 chainNetHg19,867 chainNetMm39,868 netHg19,865 netMm39,865 higher-scoring chainHg19,809 chainHg19,828 chainMm39,809 chainMm39,828 chainNetHg19,811 chainNetHg19,830 chainNetMm39,812 chainNetMm39,831 netHg19,809 netHg19,828 netMm39,809 netMm39,828 highest mrna,408 refSeqComposite,1256 uniprot,948 uniprot,1113 xenoRefGene,248 highest-scoring chainHg19,390 chainHg19,775 chainMm39,390 chainMm39,775 chainNetHg19,392 chainNetHg19,777 chainNetMm39,393 chainNetMm39,778 netHg19,390 netHg19,775 netMm39,390 netMm39,775 highlight gc5BaseBw,49 mrna,279 highlighted mrna,249 mrna,267 uniprot,580 highly microsat,40 hilgers HLTOGAannotvHg38v1,352 hiller HLTOGAannotvHg38v1,322 hillerlab HLTOGAannotvHg38v1,332 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainHg19,1044 chainMm39,1044 chainNetHg19,1046 chainNetMm39,1047 netHg19,1044 netMm39,1044 hiram gc5BaseBw,82 ucscToINSDC,51 his chainHg19,942 chainMm39,942 chainNetHg19,944 chainNetMm39,945 netHg19,942 netMm39,942 homology-based HLTOGAannotvHg38v1,26 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainHg19,921 chainMm39,921 chainNetHg19,923 chainNetMm39,924 netHg19,921 netMm39,921 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainHg19,876 chainHg19,893 chainMm39,876 chainMm39,893 chainNetHg19,878 chainNetHg19,895 chainNetMm39,879 chainNetMm39,896 netHg19,876 netHg19,893 netMm39,876 netMm39,893 refSeqComposite,96 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,485 transMapEstV5,454 transMapRefSeqV5,454 transMapRnaV5,454 transMapV5,560 hox refSeqComposite,414 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1546 rmsk,355 transMapEnsemblV5,659 transMapEstV5,628 transMapRefSeqV5,628 transMapRnaV5,628 transMapV5,734 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human HLTOGAannotvHg38v1,7 HLTOGAannotvHg38v1,53 augustusGene,205 augustusGene,210 augustusGene,276 chainHg19,1 chainHg19,3 chainHg19,65 chainHg19,96 chainHg19,148 chainHg19,266 chainHg19,291 chainHg19,572 chainHg19,620 chainHg19,1061 chainMm39,1061 chainNetHg19,3 chainNetHg19,67 chainNetHg19,98 chainNetHg19,150 chainNetHg19,268 chainNetHg19,293 chainNetHg19,574 chainNetHg19,622 chainNetHg19,1063 chainNetHg19Viewchain,2 chainNetHg19Viewnet,2 chainNetMm39,1064 genscan,217 nestedRepeats,404 netHg19,1 netHg19,3 netHg19,65 netHg19,96 netHg19,148 netHg19,266 netHg19,291 netHg19,572 netHg19,620 netHg19,1061 netMm39,1061 refSeqComposite,245 refSeqComposite,297 refSeqComposite,557 refSeqComposite,568 refSeqComposite,1072 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,362 transMapEnsemblV5,471 transMapEnsemblV5,738 transMapEnsemblV5,806 transMapEstV5,331 transMapEstV5,440 transMapEstV5,707 transMapEstV5,775 transMapRefSeqV5,331 transMapRefSeqV5,440 transMapRefSeqV5,707 transMapRefSeqV5,775 transMapRnaV5,331 transMapRnaV5,440 transMapRnaV5,707 transMapRnaV5,775 transMapV5,104 transMapV5,133 transMapV5,437 transMapV5,546 transMapV5,813 transMapV5,881 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainHg19,1096 chainMm39,1096 chainNetHg19,1098 chainNetMm39,1099 netHg19,1096 netMm39,1096 i mrna,467 mrna,491 icon refSeqComposite,750 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1129 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainHg19,937 chainMm39,937 chainNetHg19,939 chainNetMm39,940 netHg19,937 netMm39,937 refSeqComposite,1260 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 xenoRefGene,252 identifier refSeqComposite,781 refSeqComposite,800 transMapEnsemblV5,483 transMapEstV5,452 transMapRefSeqV5,452 transMapRnaV5,452 transMapV5,558 identifiers transMapEnsemblV5,384 transMapEnsemblV5,443 transMapEnsemblV5,461 transMapEstV5,353 transMapEstV5,412 transMapEstV5,430 transMapRefSeqV5,353 transMapRefSeqV5,412 transMapRefSeqV5,430 transMapRnaV5,353 transMapRnaV5,412 transMapRnaV5,430 transMapV5,459 transMapV5,518 transMapV5,536 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1258 refSeqComposite,1266 refSeqComposite,1278 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if gap,76 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 transMapEnsemblV5,244 transMapEstV5,213 transMapRefSeqV5,213 transMapRnaV5,213 transMapV5,319 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,203 ignored refSeqComposite,1451 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 implements HLTOGAannotvHg38v1,73 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,770 transMapEstV5,739 transMapRefSeqV5,739 transMapRnaV5,739 transMapV5,845 improved chainHg19,1010 chainMm39,1010 chainNetHg19,1012 chainNetMm39,1013 netHg19,1010 netMm39,1010 in HLTOGAannotvHg38v1,119 HLTOGAannotvHg38v1,124 HLTOGAannotvHg38v1,137 HLTOGAannotvHg38v1,173 HLTOGAannotvHg38v1,220 HLTOGAannotvHg38v1,242 augustusGene,101 chainHg19,31 chainHg19,94 chainHg19,114 chainHg19,146 chainHg19,153 chainHg19,167 chainHg19,186 chainHg19,189 chainHg19,228 chainHg19,249 chainHg19,294 chainHg19,327 chainHg19,357 chainHg19,369 chainHg19,378 chainHg19,396 chainHg19,401 chainHg19,410 chainHg19,422 chainHg19,436 chainHg19,478 chainHg19,495 chainHg19,526 chainHg19,544 chainHg19,558 chainHg19,593 chainHg19,689 chainHg19,777 chainHg19,818 chainHg19,826 chainHg19,842 chainHg19,875 chainHg19,887 chainHg19,1057 chainMm39,31 chainMm39,94 chainMm39,114 chainMm39,146 chainMm39,153 chainMm39,167 chainMm39,186 chainMm39,189 chainMm39,228 chainMm39,249 chainMm39,294 chainMm39,327 chainMm39,357 chainMm39,369 chainMm39,378 chainMm39,396 chainMm39,401 chainMm39,410 chainMm39,422 chainMm39,436 chainMm39,478 chainMm39,495 chainMm39,526 chainMm39,544 chainMm39,558 chainMm39,593 chainMm39,689 chainMm39,777 chainMm39,818 chainMm39,826 chainMm39,842 chainMm39,875 chainMm39,887 chainMm39,1057 chainNetHg19,33 chainNetHg19,96 chainNetHg19,116 chainNetHg19,148 chainNetHg19,155 chainNetHg19,169 chainNetHg19,188 chainNetHg19,191 chainNetHg19,230 chainNetHg19,251 chainNetHg19,296 chainNetHg19,329 chainNetHg19,359 chainNetHg19,371 chainNetHg19,380 chainNetHg19,398 chainNetHg19,403 chainNetHg19,412 chainNetHg19,424 chainNetHg19,438 chainNetHg19,480 chainNetHg19,497 chainNetHg19,528 chainNetHg19,546 chainNetHg19,560 chainNetHg19,595 chainNetHg19,691 chainNetHg19,779 chainNetHg19,820 chainNetHg19,828 chainNetHg19,844 chainNetHg19,877 chainNetHg19,889 chainNetHg19,1059 chainNetMm39,34 chainNetMm39,97 chainNetMm39,117 chainNetMm39,149 chainNetMm39,156 chainNetMm39,170 chainNetMm39,189 chainNetMm39,192 chainNetMm39,231 chainNetMm39,252 chainNetMm39,297 chainNetMm39,330 chainNetMm39,360 chainNetMm39,372 chainNetMm39,381 chainNetMm39,399 chainNetMm39,404 chainNetMm39,413 chainNetMm39,425 chainNetMm39,439 chainNetMm39,481 chainNetMm39,498 chainNetMm39,529 chainNetMm39,547 chainNetMm39,561 chainNetMm39,596 chainNetMm39,692 chainNetMm39,780 chainNetMm39,821 chainNetMm39,829 chainNetMm39,845 chainNetMm39,878 chainNetMm39,890 chainNetMm39,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 gap,13 gap,25 gap,43 gap,73 gap,128 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netHg19,31 netHg19,94 netHg19,114 netHg19,146 netHg19,153 netHg19,167 netHg19,186 netHg19,189 netHg19,228 netHg19,249 netHg19,294 netHg19,327 netHg19,357 netHg19,369 netHg19,378 netHg19,396 netHg19,401 netHg19,410 netHg19,422 netHg19,436 netHg19,478 netHg19,495 netHg19,526 netHg19,544 netHg19,558 netHg19,593 netHg19,689 netHg19,777 netHg19,818 netHg19,826 netHg19,842 netHg19,875 netHg19,887 netHg19,1057 netMm39,31 netMm39,94 netMm39,114 netMm39,146 netMm39,153 netMm39,167 netMm39,186 netMm39,189 netMm39,228 netMm39,249 netMm39,294 netMm39,327 netMm39,357 netMm39,369 netMm39,378 netMm39,396 netMm39,401 netMm39,410 netMm39,422 netMm39,436 netMm39,478 netMm39,495 netMm39,526 netMm39,544 netMm39,558 netMm39,593 netMm39,689 netMm39,777 netMm39,818 netMm39,826 netMm39,842 netMm39,875 netMm39,887 netMm39,1057 refSeqComposite,61 refSeqComposite,277 refSeqComposite,396 refSeqComposite,756 refSeqComposite,988 refSeqComposite,1035 refSeqComposite,1062 refSeqComposite,1139 refSeqComposite,1165 refSeqComposite,1180 refSeqComposite,1249 refSeqComposite,1296 refSeqComposite,1340 refSeqComposite,1355 refSeqComposite,1364 refSeqComposite,1374 refSeqComposite,1384 refSeqComposite,1443 refSeqComposite,1452 refSeqComposite,1467 refSeqComposite,1475 refSeqComposite,1535 refSeqComposite,1620 refSeqComposite,1657 refSeqComposite,1663 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,160 transMapEnsemblV5,335 transMapEnsemblV5,359 transMapEnsemblV5,367 transMapEnsemblV5,402 transMapEnsemblV5,412 transMapEnsemblV5,446 transMapEnsemblV5,492 transMapEnsemblV5,542 transMapEnsemblV5,584 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,129 transMapEstV5,304 transMapEstV5,328 transMapEstV5,336 transMapEstV5,371 transMapEstV5,381 transMapEstV5,415 transMapEstV5,461 transMapEstV5,511 transMapEstV5,553 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,129 transMapRefSeqV5,304 transMapRefSeqV5,328 transMapRefSeqV5,336 transMapRefSeqV5,371 transMapRefSeqV5,381 transMapRefSeqV5,415 transMapRefSeqV5,461 transMapRefSeqV5,511 transMapRefSeqV5,553 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,129 transMapRnaV5,304 transMapRnaV5,328 transMapRnaV5,336 transMapRnaV5,371 transMapRnaV5,381 transMapRnaV5,415 transMapRnaV5,461 transMapRnaV5,511 transMapRnaV5,553 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,76 transMapV5,235 transMapV5,410 transMapV5,434 transMapV5,442 transMapV5,477 transMapV5,487 transMapV5,521 transMapV5,567 transMapV5,617 transMapV5,659 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,241 inactivating HLTOGAannotvHg38v1,185 HLTOGAannotvHg38v1,232 HLTOGAannotvHg38v1,240 HLTOGAannotvHg38v1,275 HLTOGAannotvHg38v1,305 include mrna,76 mrna,281 mrna,305 refSeqComposite,187 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,216 refSeqComposite,262 refSeqComposite,346 refSeqComposite,648 rmsk,198 uniprot,1587 including refSeqComposite,795 rmsk,188 uniprot,1700 inclusion refSeqComposite,395 inconsistency refSeqComposite,873 incorporate refSeqComposite,660 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,293 indexing refSeqComposite,1462 indicate chainHg19,137 chainHg19,243 chainMm39,137 chainMm39,243 chainNetHg19,139 chainNetHg19,245 chainNetMm39,140 chainNetMm39,246 mrna,49 nestedRepeats,153 netHg19,137 netHg19,243 netMm39,137 netMm39,243 indicates refSeqComposite,605 xenoRefGene,58 individual chainHg19,240 chainHg19,493 chainMm39,240 chainMm39,493 chainNetHg19,242 chainNetHg19,495 chainNetMm39,243 chainNetMm39,496 netHg19,240 netHg19,493 netMm39,240 netMm39,493 refSeqComposite,676 refSeqComposite,701 refSeqComposite,745 refSeqComposite,1490 transMapEnsemblV5,600 transMapEstV5,569 transMapRefSeqV5,569 transMapRnaV5,569 transMapV5,675 infer HLTOGAannotvHg38v1,19 inference HLTOGAannotvHg38v1,361 inferring HLTOGAannotvHg38v1,32 information HLTOGAannotvHg38v1,300 augustusGene,36 chainHg19,456 chainHg19,469 chainHg19,475 chainHg19,843 chainMm39,456 chainMm39,469 chainMm39,475 chainMm39,843 chainNetHg19,458 chainNetHg19,471 chainNetHg19,477 chainNetHg19,845 chainNetMm39,459 chainNetMm39,472 chainNetMm39,478 chainNetMm39,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netHg19,456 netHg19,469 netHg19,475 netHg19,843 netMm39,456 netMm39,469 netMm39,475 netMm39,843 refSeqComposite,130 refSeqComposite,665 refSeqComposite,849 refSeqComposite,1184 refSeqComposite,1379 refSeqComposite,1383 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,566 transMapEstV5,100 transMapEstV5,117 transMapEstV5,535 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,535 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,535 transMapV5,206 transMapV5,223 transMapV5,641 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,175 initial refSeqComposite,679 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input HLTOGAannotvHg38v1,43 uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainHg19,569 chainHg19,899 chainMm39,569 chainMm39,899 chainNetHg19,571 chainNetHg19,901 chainNetMm39,572 chainNetMm39,902 netHg19,569 netHg19,899 netMm39,569 netMm39,899 insertion chainHg19,152 chainMm39,152 chainNetHg19,154 chainNetMm39,155 mrna,378 netHg19,152 netMm39,152 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,945 inside uniprot,560 inspection uniprot,1653 instead refSeqComposite,782 xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions transMapEnsemblV5,631 transMapEstV5,600 transMapRefSeqV5,600 transMapRnaV5,600 transMapV5,706 uniprot,1785 intact HLTOGAannotvHg38v1,38 HLTOGAannotvHg38v1,143 HLTOGAannotvHg38v1,166 integrates HLTOGAannotvHg38v1,29 integrating HLTOGAannotvHg38v1,356 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 refSeqComposite,1312 transMapEnsemblV5,534 transMapEstV5,503 transMapRefSeqV5,503 transMapRnaV5,503 transMapV5,609 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 refSeqComposite,1303 transMapEnsemblV5,526 transMapEstV5,495 transMapRefSeqV5,495 transMapRnaV5,495 transMapV5,601 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic HLTOGAannotvHg38v1,84 genscan,47 international mrna,452 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainHg19,599 chainHg19,611 chainHg19,627 chainHg19,802 chainMm39,599 chainMm39,611 chainMm39,627 chainMm39,802 chainNetHg19,601 chainNetHg19,613 chainNetHg19,629 chainNetHg19,804 chainNetMm39,602 chainNetMm39,614 chainNetMm39,630 chainNetMm39,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 mrna,198 netHg19,599 netHg19,611 netHg19,627 netHg19,802 netMm39,599 netMm39,611 netMm39,627 netMm39,802 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 intronic HLTOGAannotvHg38v1,82 introns chainHg19,56 chainMm39,56 chainNetHg19,58 chainNetMm39,59 genscan,45 netHg19,56 netMm39,56 refSeqComposite,936 refSeqComposite,1027 inv chainHg19,531 chainMm39,531 chainNetHg19,533 chainNetMm39,534 netHg19,531 netMm39,531 inversions chainHg19,110 chainHg19,174 chainMm39,110 chainMm39,174 chainNetHg19,112 chainNetHg19,176 chainNetMm39,113 chainNetMm39,177 netHg19,110 netHg19,174 netMm39,110 netMm39,174 inverted chainHg19,861 chainMm39,861 chainNetHg19,863 chainNetMm39,864 netHg19,861 netMm39,861 invisible refSeqComposite,1034 refSeqComposite,1061 involve chainHg19,164 chainMm39,164 chainNetHg19,166 chainNetMm39,167 netHg19,164 netMm39,164 is HLTOGAannotvHg38v1,24 HLTOGAannotvHg38v1,104 HLTOGAannotvHg38v1,135 HLTOGAannotvHg38v1,151 HLTOGAannotvHg38v1,171 HLTOGAannotvHg38v1,197 HLTOGAannotvHg38v1,218 HLTOGAannotvHg38v1,238 HLTOGAannotvHg38v1,251 HLTOGAannotvHg38v1,281 HLTOGAannotvHg38v1,287 HLTOGAannotvHg38v1,328 chainHg19,277 chainHg19,297 chainHg19,476 chainMm39,277 chainMm39,297 chainMm39,476 chainNetHg19,279 chainNetHg19,299 chainNetHg19,478 chainNetMm39,280 chainNetMm39,300 chainNetMm39,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netHg19,277 netHg19,297 netHg19,476 netMm39,277 netMm39,297 netMm39,476 refSeqComposite,146 refSeqComposite,242 refSeqComposite,316 refSeqComposite,533 refSeqComposite,563 refSeqComposite,574 refSeqComposite,710 refSeqComposite,1055 refSeqComposite,1198 refSeqComposite,1213 refSeqComposite,1429 refSeqComposite,1435 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,275 transMapEnsemblV5,418 transMapEnsemblV5,422 transMapEnsemblV5,434 transMapEnsemblV5,480 transMapEstV5,244 transMapEstV5,387 transMapEstV5,391 transMapEstV5,403 transMapEstV5,449 transMapRefSeqV5,244 transMapRefSeqV5,387 transMapRefSeqV5,391 transMapRefSeqV5,403 transMapRefSeqV5,449 transMapRnaV5,244 transMapRnaV5,387 transMapRnaV5,391 transMapRnaV5,403 transMapRnaV5,449 transMapV5,350 transMapV5,493 transMapV5,497 transMapV5,509 transMapV5,555 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 issue mrna,482 mrna,508 refSeqComposite,1781 refSeqComposite,1815 uniprot,2004 xenoRefGene,353 xenoRefGene,387 it chainHg19,89 chainHg19,276 chainHg19,530 chainHg19,542 chainMm39,89 chainMm39,276 chainMm39,530 chainMm39,542 chainNetHg19,91 chainNetHg19,278 chainNetHg19,532 chainNetHg19,544 chainNetMm39,92 chainNetMm39,279 chainNetMm39,533 chainNetMm39,545 gap,97 genscan,143 netHg19,89 netHg19,276 netHg19,530 netHg19,542 netMm39,89 netMm39,276 netMm39,530 netMm39,542 refSeqComposite,573 refSeqComposite,1299 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refSeqComposite,713 xenoRefGene,75 items chainHg19,494 chainMm39,494 chainNetHg19,496 chainNetMm39,497 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netHg19,494 netMm39,494 refSeqComposite,763 refSeqComposite,962 refSeqComposite,1662 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 genscan,220 mrna,471 mrna,495 nestedRepeats,341 refSeqComposite,1760 rmsk,364 transMapEnsemblV5,785 transMapEstV5,754 transMapRefSeqV5,754 transMapRnaV5,754 transMapV5,860 xenoRefGene,332 jan chainHg19,1103 chainMm39,1103 chainNetHg19,1105 chainNetMm39,1106 microsat,129 mrna,479 mrna,504 netHg19,1103 netMm39,1103 refSeqComposite,1778 refSeqComposite,1811 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jebb HLTOGAannotvHg38v1,340 jim chainHg19,959 chainHg19,986 chainHg19,1004 chainMm39,959 chainMm39,986 chainMm39,1004 chainNetHg19,961 chainNetHg19,988 chainNetHg19,1006 chainNetMm39,962 chainNetMm39,989 chainNetMm39,1007 netHg19,959 netHg19,986 netHg19,1004 netMm39,959 netMm39,986 netMm39,1004 joined chainHg19,122 chainMm39,122 chainNetHg19,124 chainNetMm39,125 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netHg19,122 netMm39,122 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1356 refSeqComposite,1360 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jun chainMm39,4 chainMm39,66 chainMm39,300 chainNetMm39,5 chainNetMm39,69 chainNetMm39,303 chainNetMm39Viewchain,3 chainNetMm39Viewnet,3 netMm39,4 netMm39,66 netMm39,300 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 k augustusGene,268 mrna,465 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi mrna,466 mrna,490 kasif genscan,193 kd refSeqComposite,1746 refSeqComposite,1788 xenoRefGene,318 xenoRefGene,360 kd-tree chainHg19,633 chainMm39,633 chainNetHg19,635 chainNetMm39,636 netHg19,633 netMm39,633 kd-trees chainHg19,651 chainMm39,651 chainNetHg19,653 chainNetMm39,654 netHg19,651 netMm39,651 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainHg19,960 chainHg19,987 chainHg19,1005 chainHg19,1040 chainHg19,1082 chainMm39,960 chainMm39,987 chainMm39,1005 chainMm39,1040 chainMm39,1082 chainNetHg19,962 chainNetHg19,989 chainNetHg19,1007 chainNetHg19,1042 chainNetHg19,1084 chainNetMm39,963 chainNetMm39,990 chainNetMm39,1008 chainNetMm39,1043 chainNetMm39,1085 mrna,514 netHg19,960 netHg19,987 netHg19,1005 netHg19,1040 netHg19,1082 netMm39,960 netMm39,987 netMm39,1005 netMm39,1040 netMm39,1082 refSeqComposite,1727 xenoRefGene,300 kept mrna,436 refSeqComposite,1284 xenoRefGene,276 kirilenko HLTOGAannotvHg38v1,334 km refSeqComposite,1764 xenoRefGene,336 known chainHg19,910 chainMm39,910 chainNetHg19,912 chainNetMm39,913 gold,121 netHg19,910 netMm39,910 refSeqComposite,501 xenoRefGene,14 kontopoulos HLTOGAannotvHg38v1,350 l HLTOGAannotvHg38v1,353 cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 lab HLTOGAannotvHg38v1,323 augustusGene,252 label genscan,98 refSeqComposite,760 refSeqComposite,772 refSeqComposite,808 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 refSeqComposite,765 uniprot,457 xenoRefGene,104 labels nestedRepeats,161 refSeqComposite,714 refSeqComposite,794 xenoRefGene,76 landrum refSeqComposite,1761 xenoRefGene,333 langton transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 largely chainHg19,141 chainMm39,141 chainNetHg19,143 chainNetMm39,144 netHg19,141 netMm39,141 largest chainHg19,389 chainMm39,389 chainNetHg19,391 chainNetMm39,392 netHg19,389 netMm39,389 lastz chainHg19,586 chainHg19,759 chainHg19,908 chainMm39,586 chainMm39,759 chainMm39,908 chainNetHg19,588 chainNetHg19,761 chainNetHg19,910 chainNetMm39,589 chainNetMm39,762 chainNetMm39,911 netHg19,586 netHg19,759 netHg19,908 netMm39,586 netMm39,759 netMm39,908 transMapV5,46 lau transMapEnsemblV5,730 transMapEstV5,699 transMapRefSeqV5,699 transMapRnaV5,699 transMapV5,805 lavtoaxt chainHg19,604 chainMm39,604 chainNetHg19,606 chainNetMm39,607 netHg19,604 netMm39,604 learning HLTOGAannotvHg38v1,89 least microsat,29 microsat,78 mrna,427 refSeqComposite,1275 xenoRefGene,267 lee uniprot,1955 left refSeqComposite,968 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 genscan,39 less refSeqComposite,1239 transMapEnsemblV5,372 transMapEstV5,341 transMapRefSeqV5,341 transMapRnaV5,341 transMapV5,447 uniprot,680 xenoRefGene,231 level chainHg19,384 chainHg19,418 chainHg19,423 chainHg19,430 chainHg19,488 chainHg19,515 chainHg19,528 chainHg19,560 chainMm39,384 chainMm39,418 chainMm39,423 chainMm39,430 chainMm39,488 chainMm39,515 chainMm39,528 chainMm39,560 chainNetHg19,386 chainNetHg19,420 chainNetHg19,425 chainNetHg19,432 chainNetHg19,490 chainNetHg19,517 chainNetHg19,530 chainNetHg19,562 chainNetMm39,387 chainNetMm39,421 chainNetMm39,426 chainNetMm39,433 chainNetMm39,491 chainNetMm39,518 chainNetMm39,531 chainNetMm39,563 mrna,419 netHg19,384 netHg19,418 netHg19,423 netHg19,430 netHg19,488 netHg19,515 netHg19,528 netHg19,560 netMm39,384 netMm39,418 netMm39,423 netMm39,430 netMm39,488 netMm39,515 netMm39,528 netMm39,560 refSeqComposite,607 refSeqComposite,627 refSeqComposite,1267 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,616 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,69 light-blue uniprot,178 lighter rmsk,237 like chainHg19,47 chainHg19,55 chainMm39,47 chainMm39,55 chainNetHg19,49 chainNetHg19,57 chainNetMm39,50 chainNetMm39,58 netHg19,47 netHg19,55 netMm39,47 netMm39,55 refSeqComposite,82 refSeqComposite,1610 uniprot,1541 likely HLTOGAannotvHg38v1,160 augustusGene,111 microsat,17 refSeqComposite,944 transMapV5,93 line chainHg19,466 chainMm39,466 chainNetHg19,468 chainNetMm39,469 gap,105 gold,124 nestedRepeats,151 netHg19,466 netMm39,466 refSeqComposite,999 refSeqComposite,1010 refSeqComposite,1609 rmsk,165 uniprot,1872 uniprot,1876 line-up chainHg19,533 chainMm39,533 chainNetHg19,535 chainNetMm39,536 netHg19,533 netMm39,533 line-ups chainHg19,518 chainMm39,518 chainNetHg19,520 chainNetMm39,521 netHg19,518 netMm39,518 lineage transMapEnsemblV5,807 transMapEstV5,776 transMapRefSeqV5,776 transMapRnaV5,776 transMapV5,882 lineage-specific chainHg19,934 chainMm39,934 chainNetHg19,936 chainNetMm39,937 netHg19,934 netMm39,934 linear chainHg19,693 chainMm39,693 chainNetHg19,695 chainNetMm39,696 netHg19,693 netMm39,693 lineargap chainHg19,699 chainMm39,699 chainNetHg19,701 chainNetMm39,702 netHg19,699 netMm39,699 lines chainHg19,129 chainHg19,136 chainHg19,158 chainHg19,446 chainMm39,129 chainMm39,136 chainMm39,158 chainMm39,446 chainNetHg19,131 chainNetHg19,138 chainNetHg19,160 chainNetHg19,448 chainNetMm39,132 chainNetMm39,139 chainNetMm39,161 chainNetMm39,449 nestedRepeats,131 netHg19,129 netHg19,136 netHg19,158 netHg19,446 netMm39,129 netMm39,136 netMm39,158 netMm39,446 refSeqComposite,994 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1527 refSeqComposite,1642 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman mrna,468 mrna,492 lipoification uniprot,577 list mrna,155 refSeqComposite,759 refSeqComposite,1686 uniprot,979 uniprot,1165 uniprot,1831 literature refSeqComposite,282 refSeqComposite,655 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainHg19,109 chainHg19,180 chainMm39,109 chainMm39,180 chainNetHg19,111 chainNetHg19,182 chainNetMm39,112 chainNetMm39,183 nestedRepeats,98 netHg19,109 netHg19,180 netMm39,109 netMm39,180 refSeqComposite,1332 located simpleRepeat,21 location chainHg19,248 chainMm39,248 chainNetHg19,250 chainNetMm39,251 netHg19,248 netMm39,248 transMapEnsemblV5,401 transMapEnsemblV5,411 transMapEnsemblV5,478 transMapEstV5,370 transMapEstV5,380 transMapEstV5,447 transMapRefSeqV5,370 transMapRefSeqV5,380 transMapRefSeqV5,447 transMapRnaV5,370 transMapRnaV5,380 transMapRnaV5,447 transMapV5,476 transMapV5,486 transMapV5,553 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,490 transMapEstV5,459 transMapRefSeqV5,459 transMapRnaV5,459 transMapV5,565 uniprot,451 locus HLTOGAannotvHg38v1,123 logic mrna,233 long refSeqComposite,1023 rmsk,161 rmsk,166 long-established transMapEnsemblV5,802 transMapEstV5,771 transMapRefSeqV5,771 transMapRnaV5,771 transMapV5,877 longer chainHg19,81 chainMm39,81 chainNetHg19,83 chainNetMm39,84 netHg19,81 netMm39,81 longest chainHg19,511 chainMm39,511 chainNetHg19,513 chainNetMm39,514 netHg19,511 netMm39,511 look chainHg19,46 chainMm39,46 chainNetHg19,48 chainNetMm39,49 netHg19,46 netMm39,46 loss HLTOGAannotvHg38v1,236 losses transMapEnsemblV5,800 transMapEstV5,769 transMapRefSeqV5,769 transMapRnaV5,769 transMapV5,875 lost HLTOGAannotvHg38v1,40 HLTOGAannotvHg38v1,260 HLTOGAannotvHg38v1,272 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 lower chainHg19,487 chainMm39,487 chainNetHg19,489 chainNetMm39,490 netHg19,487 netMm39,487 lower-level chainHg19,850 chainHg19,856 chainMm39,850 chainMm39,856 chainNetHg19,852 chainNetHg19,858 chainNetMm39,853 chainNetMm39,859 netHg19,850 netHg19,856 netMm39,850 netMm39,856 ls-snp uniprot,1536 lt HLTOGAannotvHg38v1,213 refSeqComposite,940 ltr rmsk,170 m HLTOGAannotvHg38v1,345 augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 mrna,463 transMapEnsemblV5,714 transMapEnsemblV5,721 transMapEnsemblV5,755 transMapEnsemblV5,757 transMapEnsemblV5,789 transMapEstV5,683 transMapEstV5,690 transMapEstV5,724 transMapEstV5,726 transMapEstV5,758 transMapRefSeqV5,683 transMapRefSeqV5,690 transMapRefSeqV5,724 transMapRefSeqV5,726 transMapRefSeqV5,758 transMapRnaV5,683 transMapRnaV5,690 transMapRnaV5,724 transMapRnaV5,726 transMapRnaV5,758 transMapV5,789 transMapV5,796 transMapV5,830 transMapV5,832 transMapV5,864 machine HLTOGAannotvHg38v1,88 made rmsk,110 transMapEnsemblV5,393 transMapEstV5,362 transMapRefSeqV5,362 transMapRnaV5,362 transMapV5,468 uniprot,931 uniprot,938 maglott refSeqComposite,1791 xenoRefGene,363 mailing refSeqComposite,1685 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make gold,75 refSeqComposite,115 refSeqComposite,1095 rmsk,123 transMapEnsemblV5,427 transMapEstV5,396 transMapRefSeqV5,396 transMapRnaV5,396 transMapV5,502 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1771 rmsk,391 rmsk,405 xenoRefGene,343 mammals HLTOGAannotvHg38v1,56 manner refSeqComposite,1622 uniprot,1469 manual refSeqComposite,257 uniprot,1652 manually refSeqComposite,249 refSeqComposite,420 many chainHg19,397 chainMm39,397 chainNetHg19,399 chainNetMm39,400 mrna,90 netHg19,397 netMm39,397 uniprot,932 uniprot,1124 map chainHg19,325 chainMm39,325 chainNetHg19,327 chainNetMm39,328 netHg19,325 netMm39,325 transMapEnsemblV5,292 transMapEstV5,261 transMapRefSeqV5,261 transMapRnaV5,261 transMapV5,367 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1104 transMapEnsemblV5,378 transMapEnsemblV5,410 transMapEnsemblV5,468 transMapEnsemblV5,766 transMapEstV5,347 transMapEstV5,379 transMapEstV5,437 transMapEstV5,735 transMapRefSeqV5,347 transMapRefSeqV5,379 transMapRefSeqV5,437 transMapRefSeqV5,735 transMapRnaV5,347 transMapRnaV5,379 transMapRnaV5,437 transMapRnaV5,735 transMapV5,130 transMapV5,453 transMapV5,485 transMapV5,543 transMapV5,841 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,319 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,298 transMapEstV5,234 transMapEstV5,254 transMapEstV5,267 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,267 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,267 transMapV5,340 transMapV5,360 transMapV5,373 ucscToINSDC,10 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,500 transMapEstV5,5 transMapEstV5,469 transMapRefSeqV5,6 transMapRefSeqV5,469 transMapRnaV5,6 transMapRnaV5,469 transMapV5,575 uniprot,1362 maps transMapEnsemblV5,474 transMapEnsemblV5,487 transMapEstV5,443 transMapEstV5,456 transMapRefSeqV5,443 transMapRefSeqV5,456 transMapRnaV5,443 transMapRnaV5,456 transMapV5,71 transMapV5,549 transMapV5,562 mar augustusGene,309 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 mario augustusGene,102 augustusGene,283 mark transMapEnsemblV5,679 transMapEstV5,648 transMapRefSeqV5,648 transMapRnaV5,648 transMapV5,754 uniprot,1539 uniprot,1956 marked refSeqComposite,521 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainHg19,253 chainHg19,512 chainHg19,550 chainMm39,253 chainMm39,512 chainMm39,550 chainNetHg19,255 chainNetHg19,514 chainNetHg19,552 chainNetMm39,256 chainNetMm39,515 chainNetMm39,553 mrna,243 mrna,258 mrna,299 mrna,317 netHg19,253 netHg19,512 netHg19,550 netMm39,253 netMm39,512 netMm39,550 refSeqComposite,908 refSeqComposite,922 uniprot,1305 uniprot,1341 matches mrna,50 matching chainHg19,256 chainMm39,256 chainNetHg19,258 chainNetMm39,259 netHg19,256 netMm39,256 uniprot,1068 uniprot,1075 matrix chainHg19,663 chainHg19,695 chainMm39,663 chainMm39,695 chainNetHg19,665 chainNetHg19,697 chainNetMm39,666 chainNetMm39,698 netHg19,663 netHg19,695 netMm39,663 netMm39,695 mature unipChain,3 uniprot,251 uniprot,292 maximally chainHg19,655 chainMm39,655 chainNetHg19,657 chainNetMm39,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netHg19,655 netMm39,655 maximilian uniprot,1944 maxtracks augustusGene,139 may HLTOGAannotvHg38v1,189 HLTOGAannotvHg38v1,263 HLTOGAannotvHg38v1,265 chainHg19,171 chainHg19,426 chainMm39,171 chainMm39,426 chainNetHg19,173 chainNetHg19,428 chainNetMm39,174 chainNetMm39,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 gap,15 gc5BaseBw,40 gold,17 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netHg19,171 netHg19,426 netMm39,171 netMm39,426 refSeqComposite,59 refSeqComposite,659 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,107 transMapEnsemblV5,142 transMapEstV5,76 transMapEstV5,111 transMapRefSeqV5,76 transMapRefSeqV5,111 transMapRnaV5,76 transMapRnaV5,111 transMapV5,182 transMapV5,217 uniprot,2046 mcgarvey refSeqComposite,1763 xenoRefGene,335 md5 uniprot,1601 mediating uniprot,314 medium chainHg19,700 chainMm39,700 chainNetHg19,702 chainNetMm39,703 netHg19,700 netMm39,700 refSeqComposite,618 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,846 xenoRefGene,172 method HLTOGAannotvHg38v1,27 uniprot,726 uniprot,753 uniprot,776 methods HLTOGAannotvHg38v1,41 augustusGene,46 chainHg19,562 chainHg19,763 chainMm39,562 chainMm39,763 chainNetHg19,564 chainNetHg19,765 chainNetMm39,565 chainNetMm39,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 genscan,130 genscan,197 microsat,45 mrna,383 nestedRepeats,244 netHg19,562 netHg19,763 netMm39,562 netMm39,763 refSeqComposite,90 refSeqComposite,1136 refSeqComposite,1218 rmsk,286 simpleRepeat,55 transMapEnsemblV5,151 transMapEstV5,120 transMapRefSeqV5,120 transMapRnaV5,120 transMapV5,226 uniprot,777 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 michael HLTOGAannotvHg38v1,321 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 middle HLTOGAannotvHg38v1,144 HLTOGAannotvHg38v1,178 HLTOGAannotvHg38v1,225 HLTOGAannotvHg38v1,244 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainHg19,928 chainHg19,965 chainHg19,1026 chainHg19,1046 chainHg19,1094 chainMm39,928 chainMm39,965 chainMm39,1026 chainMm39,1046 chainMm39,1094 chainNetHg19,930 chainNetHg19,967 chainNetHg19,1028 chainNetHg19,1048 chainNetHg19,1096 chainNetMm39,931 chainNetMm39,968 chainNetMm39,1029 chainNetMm39,1049 chainNetMm39,1097 netHg19,928 netHg19,965 netHg19,1026 netHg19,1046 netHg19,1094 netMm39,928 netMm39,965 netMm39,1026 netMm39,1046 netMm39,1094 minexonintronprob augustusGene,135 minimum chainHg19,676 chainMm39,676 chainNetHg19,678 chainNetMm39,679 netHg19,676 netMm39,676 minmeanexonintronprob augustusGene,137 minmei chainHg19,920 chainMm39,920 chainNetHg19,922 chainNetMm39,923 netHg19,920 netMm39,920 mismatch refSeqComposite,892 rmsk,218 mismatching refSeqComposite,896 misplacements uniprot,853 missing HLTOGAannotvHg38v1,205 HLTOGAannotvHg38v1,212 mitochondrion refSeqComposite,240 mj refSeqComposite,1762 xenoRefGene,334 mk_counts windowmaskerSdust,59 mm39 chainMm39,7 chainMm39,69 chainMm39,303 chainNetMm39,8 chainNetMm39,72 chainNetMm39,306 chainNetMm39Viewchain,6 chainNetMm39Viewnet,6 netMm39,7 netMm39,69 netMm39,303 mode chainHg19,381 chainMm39,381 chainNetHg19,383 chainNetMm39,384 gold,68 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netHg19,381 netMm39,381 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainHg19,238 chainMm39,238 chainNetHg19,240 chainNetMm39,241 netHg19,238 netMm39,238 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 morales HLTOGAannotvHg38v1,346 more augustusGene,35 chainHg19,160 chainHg19,220 chainMm39,160 chainMm39,220 chainNetHg19,162 chainNetHg19,222 chainNetMm39,163 chainNetMm39,223 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 genscan,50 genscan,125 genscan,163 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netHg19,160 netHg19,220 netMm39,160 netMm39,220 refSeqComposite,93 refSeqComposite,129 refSeqComposite,848 refSeqComposite,1378 refSeqComposite,1458 rmsk,323 simpleRepeat,57 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,222 transMapEnsemblV5,267 transMapEnsemblV5,289 transMapEnsemblV5,565 transMapEstV5,99 transMapEstV5,116 transMapEstV5,191 transMapEstV5,236 transMapEstV5,258 transMapEstV5,534 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,191 transMapRefSeqV5,236 transMapRefSeqV5,258 transMapRefSeqV5,534 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,191 transMapRnaV5,236 transMapRnaV5,258 transMapRnaV5,534 transMapV5,62 transMapV5,106 transMapV5,163 transMapV5,205 transMapV5,222 transMapV5,297 transMapV5,342 transMapV5,364 transMapV5,640 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 nestedRepeats,249 refSeqComposite,576 refSeqComposite,943 transMapV5,92 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainHg19,1059 chainMm39,1 chainMm39,3 chainMm39,65 chainMm39,96 chainMm39,148 chainMm39,266 chainMm39,291 chainMm39,572 chainMm39,620 chainMm39,1059 chainNetHg19,1061 chainNetMm39,1 chainNetMm39,4 chainNetMm39,68 chainNetMm39,99 chainNetMm39,151 chainNetMm39,269 chainNetMm39,294 chainNetMm39,575 chainNetMm39,623 chainNetMm39,1062 chainNetMm39Viewchain,2 chainNetMm39Viewnet,2 netHg19,1059 netMm39,1 netMm39,3 netMm39,65 netMm39,96 netMm39,148 netMm39,266 netMm39,291 netMm39,572 netMm39,620 netMm39,1059 transMapEnsemblV5,44 transMapEnsemblV5,364 transMapEstV5,333 transMapRefSeqV5,333 transMapRnaV5,333 transMapV5,439 uniprot,521 uniprot,535 mrna mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 transMapEnsemblV5,455 transMapEstV5,424 transMapRefSeqV5,424 transMapRnaV5,18 transMapRnaV5,424 transMapV5,99 transMapV5,530 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 transMapEnsemblV5,172 transMapEstV5,141 transMapRefSeqV5,141 transMapRnaV5,141 transMapV5,110 transMapV5,247 much chainHg19,877 chainHg19,894 chainMm39,877 chainMm39,894 chainNetHg19,879 chainNetHg19,896 chainNetMm39,880 chainNetMm39,897 nestedRepeats,210 netHg19,877 netHg19,894 netMm39,877 netMm39,894 mujica uniprot,1967 multiple chainHg19,192 chainMm39,192 chainNetHg19,194 chainNetMm39,195 mrna,203 mrna,402 netHg19,192 netMm39,192 refSeqComposite,1250 refSeqComposite,1297 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,242 munegowda HLTOGAannotvHg38v1,336 must refSeqComposite,302 refSeqComposite,1631 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation HLTOGAannotvHg38v1,157 HLTOGAannotvHg38v1,186 HLTOGAannotvHg38v1,233 HLTOGAannotvHg38v1,241 chainHg19,181 chainMm39,181 chainNetHg19,183 chainNetMm39,184 netHg19,181 netMm39,181 refSeqComposite,559 mutation-related uniprot,408 mutations HLTOGAannotvHg38v1,276 HLTOGAannotvHg38v1,306 unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 refSeqComposite,1323 refSeqComposite,1626 refSeqComposite,1640 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,914 refSeqComposite,955 refSeqComposite,982 refSeqComposite,1041 refSeqComposite,1068 refSeqComposite,1083 name chainHg19,363 chainMm39,363 chainNetHg19,365 chainNetMm39,366 mrna,144 nestedRepeats,136 netHg19,363 netMm39,363 refSeqComposite,755 refSeqComposite,768 refSeqComposite,778 refSeqComposite,786 refSeqComposite,798 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainHg19,242 chainMm39,242 chainNetHg19,244 chainNetMm39,245 netHg19,242 netMm39,242 refSeqComposite,803 ucscToINSDC,21 ucscToINSDC,24 xenoRefGene,129 native augustusGene,295 transMapEnsemblV5,763 transMapEstV5,732 transMapRefSeqV5,732 transMapRnaV5,732 transMapV5,122 transMapV5,838 natl chainHg19,1064 chainMm39,1064 chainNetHg19,1066 chainNetMm39,1067 netHg19,1064 netMm39,1064 natural chainHg19,815 chainMm39,815 chainNetHg19,817 chainNetMm39,818 netHg19,815 netMm39,815 nbci uniprot,822 nbsp HLTOGAannotvHg38v1,142 HLTOGAannotvHg38v1,164 HLTOGAannotvHg38v1,211 HLTOGAannotvHg38v1,234 HLTOGAannotvHg38v1,271 chainHg19,666 chainMm39,666 chainNetHg19,668 chainNetMm39,669 netHg19,666 netMm39,666 nc_005358 gold,159 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,27 refSeqComposite,72 refSeqComposite,79 refSeqComposite,104 refSeqComposite,317 refSeqComposite,373 refSeqComposite,542 refSeqComposite,638 refSeqComposite,645 refSeqComposite,689 refSeqComposite,1156 refSeqComposite,1187 refSeqComposite,1203 refSeqComposite,1723 refSeqComposite,1793 ucscToINSDC,39 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 ncbirefseq refSeqComposite,1406 refSeqComposite,1550 refSeqComposite,1694 ncbirefseqcurated refSeqComposite,1409 ncbirefseqdiffs.bb refSeqComposite,1489 ncbirefseqother.bb refSeqComposite,1487 refSeqComposite,1551 ncbirefseqpredicted refSeqComposite,1412 refSeqComposite,1614 ncbirefseqpredicted.gtf refSeqComposite,1615 ncbirefseqpsl refSeqComposite,1420 ndash refSeqComposite,199 refSeqComposite,210 refSeqComposite,340 refSeqComposite,379 refSeqComposite,434 refSeqComposite,457 refSeqComposite,479 refSeqComposite,515 refSeqComposite,548 refSeqComposite,893 refSeqComposite,927 refSeqComposite,960 refSeqComposite,1018 refSeqComposite,1044 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1643 near-best transMapEnsemblV5,355 transMapEstV5,324 transMapRefSeqV5,324 transMapRnaV5,324 transMapV5,430 necessary chainHg19,799 chainMm39,799 chainNetHg19,801 chainNetMm39,802 netHg19,799 netMm39,799 nematodes augustusGene,211 net chainHg19,34 chainHg19,258 chainHg19,261 chainHg19,376 chainHg19,753 chainMm39,34 chainMm39,258 chainMm39,261 chainMm39,376 chainMm39,753 chainNetHg19,10 chainNetHg19,36 chainNetHg19,260 chainNetHg19,263 chainNetHg19,378 chainNetHg19,755 chainNetHg19Viewchain,9 chainNetHg19Viewnet,1 chainNetHg19Viewnet,9 chainNetMm39,3 chainNetMm39,11 chainNetMm39,37 chainNetMm39,261 chainNetMm39,264 chainNetMm39,379 chainNetMm39,756 chainNetMm39Viewchain,9 chainNetMm39Viewnet,1 chainNetMm39Viewnet,9 netHg19,2 netHg19,9 netHg19,34 netHg19,258 netHg19,261 netHg19,376 netHg19,753 netMm39,2 netMm39,9 netMm39,34 netMm39,258 netMm39,261 netMm39,376 netMm39,753 transMapV5,139 netclass chainHg19,869 chainHg19,992 chainMm39,869 chainMm39,992 chainNetHg19,871 chainNetHg19,994 chainNetMm39,872 chainNetMm39,995 netHg19,869 netHg19,992 netMm39,869 netMm39,992 netfilter transMapEnsemblV5,252 transMapEstV5,221 transMapRefSeqV5,221 transMapRnaV5,221 transMapV5,327 nets chainHg19,979 chainMm39,979 chainNetHg19,981 chainNetMm39,982 netHg19,979 netMm39,979 transMapEnsemblV5,199 transMapEnsemblV5,241 transMapEnsemblV5,247 transMapEnsemblV5,261 transMapEstV5,168 transMapEstV5,210 transMapEstV5,216 transMapEstV5,230 transMapRefSeqV5,168 transMapRefSeqV5,210 transMapRefSeqV5,216 transMapRefSeqV5,230 transMapRnaV5,168 transMapRnaV5,210 transMapRnaV5,216 transMapRnaV5,230 transMapV5,88 transMapV5,274 transMapV5,316 transMapV5,322 transMapV5,336 netsyntenic chainHg19,837 chainHg19,990 chainMm39,837 chainMm39,990 chainNetHg19,839 chainNetHg19,992 chainNetMm39,840 chainNetMm39,993 netHg19,837 netHg19,990 netMm39,837 netMm39,990 new augustusGene,329 newer nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainHg19,342 chainHg19,371 chainMm39,342 chainMm39,371 chainNetHg19,344 chainNetHg19,373 chainNetMm39,345 chainNetMm39,374 netHg19,342 netHg19,371 netMm39,342 netMm39,371 refSeqComposite,166 refSeqComposite,751 nig augustusGene,270 nm refSeqComposite,224 refSeqComposite,489 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 nm_012309 refSeqComposite,1135 nm_012309.4 refSeqComposite,1133 no HLTOGAannotvHg38v1,155 HLTOGAannotvHg38v1,184 HLTOGAannotvHg38v1,231 microsat,73 transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainHg19,49 chainMm39,49 chainNetHg19,51 chainNetMm39,52 netHg19,49 netMm39,49 non-coding augustusGene,75 refSeqComposite,1084 xenoRefGene,191 non-pika xenoRefGene,3 non-protein-coding refSeqComposite,22 xenoRefGene,17 xenoRefGene,199 non-redundant refSeqComposite,1799 xenoRefGene,371 nonsyn chainHg19,548 chainMm39,548 chainNetHg19,550 chainNetMm39,551 netHg19,548 netMm39,548 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not HLTOGAannotvHg38v1,252 HLTOGAannotvHg38v1,266 chainHg19,804 chainMm39,804 chainNetHg19,806 chainNetMm39,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 mrna,295 ncbiRefSeqOther,7 netHg19,804 netMm39,804 refSeqComposite,176 refSeqComposite,390 refSeqComposite,428 refSeqComposite,471 refSeqComposite,671 refSeqComposite,696 refSeqComposite,1056 refSeqComposite,1134 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note nestedRepeats,264 refSeqComposite,175 refSeqComposite,1616 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 uniprot,695 novel HLTOGAannotvHg38v1,75 transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 novo augustusGene,304 transMapEnsemblV5,772 transMapEstV5,741 transMapRefSeqV5,741 transMapRnaV5,741 transMapV5,847 now uniprot,1680 np refSeqComposite,226 refSeqComposite,229 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,225 refSeqComposite,491 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 ns chainHg19,884 chainMm39,884 chainNetHg19,886 chainNetMm39,887 netHg19,884 netMm39,884 nuclear rmsk,155 rmsk,163 nucleic microsat,125 mrna,475 mrna,500 refSeqComposite,1774 refSeqComposite,1807 simpleRepeat,85 uniprot,1997 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 rmsk,233 transMapEnsemblV5,424 transMapEnsemblV5,547 transMapEstV5,393 transMapEstV5,516 transMapRefSeqV5,393 transMapRefSeqV5,516 transMapRnaV5,393 transMapRnaV5,516 transMapV5,499 transMapV5,622 o refSeqComposite,1756 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,649 transMapEstV5,618 transMapRefSeqV5,618 transMapRnaV5,618 transMapV5,724 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1481 refSeqComposite,1501 transMapEnsemblV5,156 transMapEnsemblV5,609 transMapEstV5,125 transMapEstV5,578 transMapRefSeqV5,125 transMapRefSeqV5,578 transMapRnaV5,125 transMapRnaV5,578 transMapV5,231 transMapV5,684 uniprot,1506 uniprot,1695 occasional refSeqComposite,62 occur simpleRepeat,36 ochpri3 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,203 transMapEnsemblV5,662 transMapEstV5,172 transMapEstV5,631 transMapRefSeqV5,172 transMapRefSeqV5,631 transMapRnaV5,172 transMapRnaV5,631 transMapV5,278 transMapV5,737 uniprot,1816 ochpri3.ensembl.transmapv4.bigpsl transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 ochpri3.ensembl.transmapv5.bigpsl transMapV5,665 ochpri3.est.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 ochpri3.est.transmapv5.bigpsl transMapV5,674 ochpri3.fa windowmaskerSdust,62 windowmaskerSdust,71 ochpri3.refseq.transmapv4.bigpsl transMapEnsemblV5,593 transMapEnsemblV5,665 transMapEstV5,562 transMapEstV5,634 transMapRefSeqV5,562 transMapRefSeqV5,634 transMapRnaV5,562 transMapRnaV5,634 ochpri3.refseq.transmapv5.bigpsl transMapV5,668 transMapV5,740 ochpri3.rna.transmapv4.bigpsl transMapEnsemblV5,596 transMapEstV5,565 transMapRefSeqV5,565 transMapRnaV5,565 ochpri3.rna.transmapv5.bigpsl transMapV5,671 oct augustusGene,334 of HLTOGAannotvHg38v1,49 HLTOGAannotvHg38v1,81 HLTOGAannotvHg38v1,112 HLTOGAannotvHg38v1,115 HLTOGAannotvHg38v1,146 HLTOGAannotvHg38v1,168 HLTOGAannotvHg38v1,180 HLTOGAannotvHg38v1,201 HLTOGAannotvHg38v1,215 HLTOGAannotvHg38v1,227 HLTOGAannotvHg38v1,246 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainHg19,17 chainHg19,64 chainHg19,179 chainHg19,199 chainHg19,251 chainHg19,272 chainHg19,354 chainHg19,364 chainHg19,482 chainHg19,502 chainHg19,635 chainHg19,640 chainHg19,658 chainHg19,678 chainHg19,878 chainHg19,953 chainHg19,975 chainHg19,999 chainHg19,1013 chainMm39,17 chainMm39,64 chainMm39,179 chainMm39,199 chainMm39,251 chainMm39,272 chainMm39,354 chainMm39,364 chainMm39,482 chainMm39,502 chainMm39,635 chainMm39,640 chainMm39,658 chainMm39,678 chainMm39,878 chainMm39,953 chainMm39,975 chainMm39,999 chainMm39,1013 chainNetHg19,19 chainNetHg19,66 chainNetHg19,181 chainNetHg19,201 chainNetHg19,253 chainNetHg19,274 chainNetHg19,356 chainNetHg19,366 chainNetHg19,484 chainNetHg19,504 chainNetHg19,637 chainNetHg19,642 chainNetHg19,660 chainNetHg19,680 chainNetHg19,880 chainNetHg19,955 chainNetHg19,977 chainNetHg19,1001 chainNetHg19,1015 chainNetMm39,20 chainNetMm39,67 chainNetMm39,182 chainNetMm39,202 chainNetMm39,254 chainNetMm39,275 chainNetMm39,357 chainNetMm39,367 chainNetMm39,485 chainNetMm39,505 chainNetMm39,638 chainNetMm39,643 chainNetMm39,661 chainNetMm39,681 chainNetMm39,881 chainNetMm39,956 chainNetMm39,978 chainNetMm39,1002 chainNetMm39,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 gap,40 gap,63 gap,82 gap,88 gap,122 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netHg19,17 netHg19,64 netHg19,179 netHg19,199 netHg19,251 netHg19,272 netHg19,354 netHg19,364 netHg19,482 netHg19,502 netHg19,635 netHg19,640 netHg19,658 netHg19,678 netHg19,878 netHg19,953 netHg19,975 netHg19,999 netHg19,1013 netMm39,17 netMm39,64 netMm39,179 netMm39,199 netMm39,251 netMm39,272 netMm39,354 netMm39,364 netMm39,482 netMm39,502 netMm39,635 netMm39,640 netMm39,658 netMm39,678 netMm39,878 netMm39,953 netMm39,975 netMm39,999 netMm39,1013 refSeqComposite,161 refSeqComposite,194 refSeqComposite,212 refSeqComposite,259 refSeqComposite,320 refSeqComposite,342 refSeqComposite,436 refSeqComposite,486 refSeqComposite,517 refSeqComposite,524 refSeqComposite,550 refSeqComposite,608 refSeqComposite,628 refSeqComposite,706 refSeqComposite,734 refSeqComposite,783 refSeqComposite,792 refSeqComposite,872 refSeqComposite,887 refSeqComposite,939 refSeqComposite,985 refSeqComposite,1003 refSeqComposite,1051 refSeqComposite,1238 refSeqComposite,1270 refSeqComposite,1343 refSeqComposite,1424 refSeqComposite,1426 refSeqComposite,1496 refSeqComposite,1566 refSeqComposite,1646 refSeqComposite,1692 refSeqComposite,1696 refSeqComposite,1802 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,139 transMapEnsemblV5,168 transMapEnsemblV5,207 transMapEnsemblV5,273 transMapEnsemblV5,280 transMapEnsemblV5,296 transMapEnsemblV5,308 transMapEnsemblV5,321 transMapEnsemblV5,338 transMapEnsemblV5,357 transMapEnsemblV5,375 transMapEnsemblV5,454 transMapEnsemblV5,505 transMapEnsemblV5,548 transMapEnsemblV5,736 transMapEnsemblV5,801 transMapEstV5,54 transMapEstV5,108 transMapEstV5,137 transMapEstV5,176 transMapEstV5,242 transMapEstV5,249 transMapEstV5,265 transMapEstV5,277 transMapEstV5,290 transMapEstV5,307 transMapEstV5,326 transMapEstV5,344 transMapEstV5,423 transMapEstV5,474 transMapEstV5,517 transMapEstV5,705 transMapEstV5,770 transMapRefSeqV5,54 transMapRefSeqV5,108 transMapRefSeqV5,137 transMapRefSeqV5,176 transMapRefSeqV5,242 transMapRefSeqV5,249 transMapRefSeqV5,265 transMapRefSeqV5,277 transMapRefSeqV5,290 transMapRefSeqV5,307 transMapRefSeqV5,326 transMapRefSeqV5,344 transMapRefSeqV5,423 transMapRefSeqV5,474 transMapRefSeqV5,517 transMapRefSeqV5,705 transMapRefSeqV5,770 transMapRnaV5,54 transMapRnaV5,108 transMapRnaV5,137 transMapRnaV5,176 transMapRnaV5,242 transMapRnaV5,249 transMapRnaV5,265 transMapRnaV5,277 transMapRnaV5,290 transMapRnaV5,307 transMapRnaV5,326 transMapRnaV5,344 transMapRnaV5,423 transMapRnaV5,474 transMapRnaV5,517 transMapRnaV5,705 transMapRnaV5,770 transMapV5,55 transMapV5,214 transMapV5,243 transMapV5,282 transMapV5,348 transMapV5,355 transMapV5,371 transMapV5,383 transMapV5,396 transMapV5,413 transMapV5,432 transMapV5,450 transMapV5,529 transMapV5,580 transMapV5,623 transMapV5,811 transMapV5,876 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainHg19,333 chainHg19,339 chainMm39,333 chainMm39,339 chainNetHg19,335 chainNetHg19,341 chainNetMm39,336 chainNetMm39,342 netHg19,333 netHg19,339 netMm39,333 netMm39,339 refSeqComposite,806 xenoRefGene,132 offers genscan,79 often HLTOGAannotvHg38v1,206 chainHg19,209 chainHg19,221 chainMm39,209 chainMm39,221 chainNetHg19,211 chainNetHg19,223 chainNetMm39,212 chainNetMm39,224 netHg19,209 netHg19,221 netMm39,209 netMm39,221 older uniprot,1560 uniprot,1647 omim refSeqComposite,780 refSeqComposite,799 omitted nestedRepeats,165 on HLTOGAannotvHg38v1,79 HLTOGAannotvHg38v1,295 augustusGene,29 augustusGene,37 augustusGene,151 chainHg19,321 chainHg19,347 chainHg19,450 chainHg19,464 chainHg19,514 chainHg19,519 chainHg19,534 chainHg19,765 chainMm39,321 chainMm39,347 chainMm39,450 chainMm39,464 chainMm39,514 chainMm39,519 chainMm39,534 chainMm39,765 chainNetHg19,323 chainNetHg19,349 chainNetHg19,452 chainNetHg19,466 chainNetHg19,516 chainNetHg19,521 chainNetHg19,536 chainNetHg19,767 chainNetMm39,324 chainNetMm39,350 chainNetMm39,453 chainNetMm39,467 chainNetMm39,517 chainNetMm39,522 chainNetMm39,537 chainNetMm39,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 gap,85 genscan,27 genscan,52 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netHg19,321 netHg19,347 netHg19,450 netHg19,464 netHg19,514 netHg19,519 netHg19,534 netHg19,765 netMm39,321 netMm39,347 netMm39,450 netMm39,464 netMm39,514 netMm39,519 netMm39,534 netMm39,765 refSeqComposite,131 refSeqComposite,181 refSeqComposite,238 refSeqComposite,252 refSeqComposite,360 refSeqComposite,513 refSeqComposite,566 refSeqComposite,972 refSeqComposite,1116 refSeqComposite,1596 refSeqComposite,1638 refSeqComposite,1676 refSeqComposite,1701 refSeqComposite,1770 rmsk,74 transMapEnsemblV5,567 transMapEnsemblV5,804 transMapEstV5,536 transMapEstV5,773 transMapRefSeqV5,536 transMapRefSeqV5,773 transMapRnaV5,536 transMapRnaV5,773 transMapV5,102 transMapV5,642 transMapV5,879 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,342 once mrna,209 uniprot,647 one augustusGene,169 chainHg19,187 chainHg19,355 chainHg19,501 chainHg19,792 chainHg19,888 chainMm39,187 chainMm39,355 chainMm39,501 chainMm39,792 chainMm39,888 chainNetHg19,189 chainNetHg19,357 chainNetHg19,503 chainNetHg19,794 chainNetHg19,890 chainNetMm39,190 chainNetMm39,358 chainNetMm39,504 chainNetMm39,795 chainNetMm39,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 gold,155 mrna,116 mrna,227 mrna,260 netHg19,187 netHg19,355 netHg19,501 netHg19,792 netHg19,888 netMm39,187 netMm39,355 netMm39,501 netMm39,792 netMm39,888 transMapV5,77 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainHg19,351 chainMm39,351 chainNetHg19,353 chainNetMm39,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netHg19,351 netMm39,351 refSeqComposite,157 refSeqComposite,217 refSeqComposite,234 refSeqComposite,246 refSeqComposite,512 refSeqComposite,564 refSeqComposite,1261 refSeqComposite,1533 transMapEnsemblV5,49 transMapEnsemblV5,650 transMapEstV5,619 transMapRefSeqV5,619 transMapRnaV5,619 transMapV5,725 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,208 xenoRefGene,253 oommen transMapEnsemblV5,728 transMapEstV5,697 transMapRefSeqV5,697 transMapRnaV5,697 transMapV5,803 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainHg19,546 chainMm39,546 chainNetHg19,548 chainNetMm39,549 netHg19,546 netMm39,546 option augustusGene,167 augustusGene,187 genscan,94 mrna,350 refSeqComposite,773 refSeqComposite,838 transMapEnsemblV5,134 transMapEstV5,103 transMapRefSeqV5,103 transMapRnaV5,103 transMapV5,209 xenoRefGene,112 xenoRefGene,164 optional refSeqComposite,816 xenoRefGene,142 options gc5BaseBw,70 genscan,85 mrna,381 or HLTOGAannotvHg38v1,39 HLTOGAannotvHg38v1,96 HLTOGAannotvHg38v1,264 chainHg19,30 chainHg19,127 chainHg19,150 chainHg19,182 chainHg19,485 chainHg19,860 chainHg19,889 chainMm39,30 chainMm39,127 chainMm39,150 chainMm39,182 chainMm39,485 chainMm39,860 chainMm39,889 chainNetHg19,32 chainNetHg19,129 chainNetHg19,152 chainNetHg19,184 chainNetHg19,487 chainNetHg19,862 chainNetHg19,891 chainNetMm39,33 chainNetMm39,130 chainNetMm39,153 chainNetMm39,185 chainNetMm39,488 chainNetMm39,863 chainNetMm39,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 mrna,117 mrna,252 mrna,271 mrna,280 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netHg19,30 netHg19,127 netHg19,150 netHg19,182 netHg19,485 netHg19,860 netHg19,889 netMm39,30 netMm39,127 netMm39,150 netMm39,182 netMm39,485 netMm39,860 netMm39,889 refSeqComposite,85 refSeqComposite,121 refSeqComposite,227 refSeqComposite,279 refSeqComposite,354 refSeqComposite,400 refSeqComposite,409 refSeqComposite,415 refSeqComposite,424 refSeqComposite,619 refSeqComposite,640 refSeqComposite,688 refSeqComposite,779 refSeqComposite,789 refSeqComposite,804 refSeqComposite,948 refSeqComposite,970 refSeqComposite,1049 refSeqComposite,1310 refSeqComposite,1325 refSeqComposite,1492 refSeqComposite,1514 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,531 transMapEnsemblV5,559 transMapEnsemblV5,602 transMapEnsemblV5,622 transMapEstV5,500 transMapEstV5,528 transMapEstV5,571 transMapEstV5,591 transMapRefSeqV5,500 transMapRefSeqV5,528 transMapRefSeqV5,571 transMapRefSeqV5,591 transMapRnaV5,500 transMapRnaV5,528 transMapRnaV5,571 transMapRnaV5,591 transMapV5,47 transMapV5,606 transMapV5,634 transMapV5,677 transMapV5,697 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,130 order gap,79 gold,110 uniprot,872 organ mrna,141 mrna,147 organism chainHg19,330 chainHg19,360 chainMm39,330 chainMm39,360 chainNetHg19,332 chainNetHg19,362 chainNetMm39,333 chainNetMm39,363 netHg19,330 netHg19,360 netMm39,330 netMm39,360 organisms chainHg19,905 chainMm39,905 chainNetHg19,907 chainNetMm39,908 nestedRepeats,295 netHg19,905 netMm39,905 rmsk,302 transMapEnsemblV5,159 transMapEnsemblV5,216 transMapEstV5,128 transMapEstV5,185 transMapRefSeqV5,128 transMapRefSeqV5,185 transMapRnaV5,128 transMapRnaV5,185 transMapV5,64 transMapV5,152 transMapV5,234 transMapV5,291 uniprot,998 xenoRefGene,20 organized refSeqComposite,1373 organizes chainHg19,614 chainMm39,614 chainNetHg19,616 chainNetMm39,617 netHg19,614 netMm39,614 orientation chainHg19,547 chainMm39,547 chainNetHg19,549 chainNetMm39,550 cytoBandIdeo,6 gap,81 gold,112 netHg19,547 netMm39,547 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous HLTOGAannotvHg38v1,121 transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs HLTOGAannotvHg38v1,20 HLTOGAannotvHg38v1,33 HLTOGAannotvHg38v1,93 chainHg19,284 chainMm39,284 chainNetHg19,286 chainNetMm39,287 netHg19,284 netMm39,284 transMapV5,94 orthology HLTOGAannotvHg38v1,303 HLTOGAannotvHg38v1,360 osipova HLTOGAannotvHg38v1,338 ostell mrna,470 mrna,494 other augustusGene,208 chainHg19,24 chainHg19,412 chainHg19,505 chainMm39,24 chainMm39,412 chainMm39,505 chainNetHg19,26 chainNetHg19,414 chainNetHg19,507 chainNetMm39,27 chainNetMm39,415 chainNetMm39,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netHg19,24 netHg19,412 netHg19,505 netMm39,24 netMm39,412 netMm39,505 refSeqComposite,274 refSeqComposite,378 refSeqComposite,381 refSeqComposite,1367 refSeqComposite,1393 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,368 transMapEstV5,28 transMapEstV5,337 transMapRefSeqV5,28 transMapRefSeqV5,337 transMapRnaV5,28 transMapRnaV5,337 transMapV5,27 transMapV5,443 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 genscan,58 refSeqComposite,137 refSeqComposite,1321 refSeqComposite,1328 refSeqComposite,1344 refSeqComposite,1359 refSeqComposite,1483 refSeqComposite,1503 refSeqComposite,1624 refSeqComposite,1677 refSeqComposite,1684 refSeqComposite,1702 rmsk,124 rmsk,129 transMapEnsemblV5,556 transMapEnsemblV5,562 transMapEnsemblV5,572 transMapEnsemblV5,611 transMapEstV5,525 transMapEstV5,531 transMapEstV5,541 transMapEstV5,580 transMapRefSeqV5,525 transMapRefSeqV5,531 transMapRefSeqV5,541 transMapRefSeqV5,580 transMapRnaV5,525 transMapRnaV5,531 transMapRnaV5,541 transMapRnaV5,580 transMapV5,631 transMapV5,637 transMapV5,647 transMapV5,686 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainHg19,634 chainMm39,634 chainNetHg19,636 chainNetMm39,637 netHg19,634 netMm39,634 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside refSeqComposite,686 uniprot,558 over chainHg19,195 chainHg19,649 chainMm39,195 chainMm39,649 chainNetHg19,197 chainNetHg19,651 chainNetMm39,198 chainNetMm39,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netHg19,195 netHg19,649 netMm39,195 netMm39,649 refSeqComposite,1031 uniprot,522 uniprot,536 overlapping chainHg19,112 chainHg19,175 chainMm39,112 chainMm39,175 chainNetHg19,114 chainNetHg19,177 chainNetMm39,115 chainNetMm39,178 netHg19,112 netHg19,175 netMm39,112 netMm39,175 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainHg19,1033 chainMm39,1033 chainNetHg19,1035 chainNetMm39,1036 netHg19,1033 netMm39,1033 pack chainHg19,231 chainMm39,231 chainNetHg19,233 chainNetMm39,234 nestedRepeats,116 netHg19,231 netMm39,231 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 genscan,78 genscan,123 mrna,56 mrna,361 mrna,382 refSeqComposite,113 refSeqComposite,738 refSeqComposite,863 refSeqComposite,1123 refSeqComposite,1641 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,98 xenoRefGene,189 pages chainHg19,770 chainMm39,770 chainNetHg19,772 chainNetMm39,773 netHg19,770 netMm39,770 pair gap,95 pairwise chainHg19,1011 chainHg19,1029 chainMm39,1011 chainMm39,1029 chainNetHg19,1013 chainNetHg19,1031 chainNetMm39,1014 chainNetMm39,1032 netHg19,1011 netHg19,1029 netMm39,1011 netMm39,1029 transMapEnsemblV5,336 transMapEstV5,305 transMapRefSeqV5,305 transMapRnaV5,305 transMapV5,83 transMapV5,411 paradigm HLTOGAannotvHg38v1,76 paralogous transMapEnsemblV5,300 transMapEstV5,269 transMapRefSeqV5,269 transMapRnaV5,269 transMapV5,375 paralogs HLTOGAannotvHg38v1,95 chainHg19,224 chainMm39,224 chainNetHg19,226 chainNetMm39,227 netHg19,224 netMm39,224 transMapV5,160 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parentheses gold,147 part chainHg19,271 chainMm39,271 chainNetHg19,273 chainNetMm39,274 netHg19,271 netMm39,271 refSeqComposite,523 partially HLTOGAannotvHg38v1,165 particular augustusGene,234 chainHg19,197 chainMm39,197 chainNetHg19,199 chainNetMm39,200 netHg19,197 netMm39,197 refSeqComposite,296 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts HLTOGAannotvHg38v1,200 chainHg19,39 chainHg19,50 chainMm39,39 chainMm39,50 chainNetHg19,41 chainNetHg19,52 chainNetMm39,42 chainNetMm39,53 netHg19,39 netHg19,50 netMm39,39 netMm39,50 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainHg19,916 chainHg19,1019 chainMm39,916 chainMm39,1019 chainNetHg19,918 chainNetHg19,1021 chainNetMm39,919 chainNetMm39,1022 netHg19,916 netHg19,1019 netMm39,916 netMm39,1019 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 period microsat,65 permitted rmsk,314 ph.d chainHg19,1016 chainMm39,1016 chainNetHg19,1018 chainNetMm39,1019 netHg19,1016 netMm39,1016 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 pia uniprot,1971 pick uniprot,1089 pika chainHg19,72 chainHg19,98 chainHg19,155 chainHg19,201 chainHg19,267 chainHg19,274 chainHg19,573 chainHg19,625 chainMm39,72 chainMm39,98 chainMm39,155 chainMm39,201 chainMm39,267 chainMm39,274 chainMm39,573 chainMm39,625 chainNetHg19,74 chainNetHg19,100 chainNetHg19,157 chainNetHg19,203 chainNetHg19,269 chainNetHg19,276 chainNetHg19,575 chainNetHg19,627 chainNetMm39,75 chainNetMm39,101 chainNetMm39,158 chainNetMm39,204 chainNetMm39,270 chainNetMm39,277 chainNetMm39,576 chainNetMm39,628 gap,17 gold,19 mrna,1 mrna,3 mrna,17 mrna,385 netHg19,72 netHg19,98 netHg19,155 netHg19,201 netHg19,267 netHg19,274 netHg19,573 netHg19,625 netMm39,72 netMm39,98 netMm39,155 netMm39,201 netMm39,267 netMm39,274 netMm39,573 netMm39,625 refSeqComposite,19 refSeqComposite,441 refSeqComposite,462 refSeqComposite,495 refSeqComposite,1230 transMapEnsemblV5,90 transMapEnsemblV5,202 transMapEnsemblV5,332 transMapEstV5,59 transMapEstV5,171 transMapEstV5,301 transMapRefSeqV5,59 transMapRefSeqV5,171 transMapRefSeqV5,301 transMapRnaV5,59 transMapRnaV5,171 transMapRnaV5,301 transMapV5,60 transMapV5,277 transMapV5,407 xenoRefGene,23 xenoRefGene,222 pipeline refSeqComposite,1189 uniprot,1537 pipelines uniprot,1850 place chainHg19,789 chainMm39,789 chainNetHg19,791 chainNetMm39,792 netHg19,789 netMm39,789 placed chainHg19,831 chainMm39,831 chainNetHg19,833 chainNetMm39,834 netHg19,831 netMm39,831 placement refSeqComposite,964 places mrna,403 refSeqComposite,1251 xenoRefGene,243 please refSeqComposite,102 refSeqComposite,1109 refSeqComposite,1681 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,808 transMapEstV5,777 transMapRefSeqV5,777 transMapRnaV5,777 transMapV5,883 plus refSeqComposite,898 pmc HLTOGAannotvHg38v1,373 chainHg19,1078 chainHg19,1109 chainMm39,1078 chainMm39,1109 chainNetHg19,1080 chainNetHg19,1111 chainNetMm39,1081 chainNetMm39,1112 microsat,136 mrna,486 mrna,512 mrna,530 netHg19,1078 netHg19,1109 netMm39,1078 netMm39,1109 refSeqComposite,1743 refSeqComposite,1785 refSeqComposite,1819 simpleRepeat,96 transMapEnsemblV5,752 transMapEnsemblV5,818 transMapEstV5,721 transMapEstV5,787 transMapRefSeqV5,721 transMapRefSeqV5,787 transMapRnaV5,721 transMapRnaV5,787 transMapV5,827 transMapV5,893 uniprot,2008 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc10193443 HLTOGAannotvHg38v1,374 pmc148217 microsat,137 simpleRepeat,97 pmc187518 mrna,531 refSeqComposite,1744 xenoRefGene,316 pmc208784 chainHg19,1079 chainMm39,1079 chainNetHg19,1081 chainNetMm39,1082 netHg19,1079 netMm39,1079 pmc2099585 transMapEnsemblV5,753 transMapEstV5,722 transMapRefSeqV5,722 transMapRnaV5,722 transMapV5,828 pmc2134963 transMapEnsemblV5,819 transMapEstV5,788 transMapRefSeqV5,788 transMapRnaV5,788 transMapV5,894 pmc308779 mrna,513 pmc3245120 uniprot,2009 pmc3531190 mrna,487 pmc3965018 refSeqComposite,1786 xenoRefGene,358 pmc430961 chainHg19,1110 chainMm39,1110 chainNetHg19,1112 chainNetMm39,1113 netHg19,1110 netMm39,1110 pmc539979 refSeqComposite,1820 xenoRefGene,392 pmid HLTOGAannotvHg38v1,371 augustusGene,314 augustusGene,339 chainHg19,1038 chainHg19,1076 chainHg19,1107 chainMm39,1038 chainMm39,1076 chainMm39,1107 chainNetHg19,1040 chainNetHg19,1078 chainNetHg19,1109 chainNetMm39,1041 chainNetMm39,1079 chainNetMm39,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 genscan,229 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netHg19,1038 netHg19,1076 netHg19,1107 netMm39,1038 netMm39,1076 netMm39,1107 refSeqComposite,1741 refSeqComposite,1783 refSeqComposite,1817 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,750 transMapEnsemblV5,782 transMapEnsemblV5,816 transMapEstV5,719 transMapEstV5,751 transMapEstV5,785 transMapRefSeqV5,719 transMapRefSeqV5,751 transMapRefSeqV5,785 transMapRnaV5,719 transMapRnaV5,751 transMapRnaV5,785 transMapV5,825 transMapV5,857 transMapV5,891 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point rmsk,269 poly-a augustusGene,62 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainHg19,705 chainMm39,705 chainNetHg19,707 chainNetMm39,708 netHg19,705 netMm39,705 refSeqComposite,983 uniprot,610 positions HLTOGAannotvHg38v1,109 uniprot,1495 possible chainHg19,406 chainMm39,406 chainNetHg19,408 chainNetMm39,409 netHg19,406 netMm39,406 refSeqComposite,185 uniprot,601 possibly chainHg19,283 chainMm39,283 chainNetHg19,285 chainNetMm39,286 netHg19,283 netMm39,283 simpleRepeat,18 post-alignment transMapEnsemblV5,303 transMapEstV5,272 transMapRefSeqV5,272 transMapRnaV5,272 transMapV5,378 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1518 transMapEnsemblV5,626 transMapEstV5,595 transMapRefSeqV5,595 transMapRnaV5,595 transMapV5,701 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,203 refSeqComposite,339 refSeqComposite,358 refSeqComposite,403 refSeqComposite,589 refSeqComposite,615 refSeqComposite,691 refSeqComposite,711 refSeqComposite,1411 refSeqComposite,1671 uniprot,48 uniprot,193 xenoRefGene,68 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,375 refSeqComposite,600 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,53 predictions HLTOGAannotvHg38v1,14 augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,829 refSeqComposite,858 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared HLTOGAannotvHg38v1,318 gc5BaseBw,80 ucscToINSDC,49 uniprot,712 present HLTOGAannotvHg38v1,152 HLTOGAannotvHg38v1,172 HLTOGAannotvHg38v1,219 HLTOGAannotvHg38v1,278 cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous refSeqComposite,1220 refSeqComposite,1335 refSeqComposite,1690 uniprot,1654 previously chainHg19,909 chainMm39,909 chainNetHg19,911 chainNetMm39,912 netHg19,909 netMm39,909 refSeqComposite,500 primary unipStruct,4 uniprot,360 principal gap,120 pringle transMapEnsemblV5,792 transMapEstV5,761 transMapRefSeqV5,761 transMapRnaV5,761 transMapV5,867 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainHg19,1063 chainMm39,1063 chainNetHg19,1065 chainNetMm39,1066 netHg19,1063 netMm39,1063 procedure uniprot,990 procedures gap,22 gold,24 process chainHg19,813 chainMm39,813 chainNetHg19,815 chainNetMm39,816 netHg19,813 netMm39,813 refSeqComposite,647 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed HLTOGAannotvHg38v1,97 chainHg19,212 chainMm39,212 chainNetHg19,214 chainNetMm39,215 netHg19,212 netMm39,212 processing refSeqComposite,1333 produced mrna,442 refSeqComposite,383 refSeqComposite,1710 transMapEnsemblV5,22 transMapEnsemblV5,677 transMapEnsemblV5,701 transMapEstV5,20 transMapEstV5,646 transMapEstV5,670 transMapRefSeqV5,20 transMapRefSeqV5,646 transMapRefSeqV5,670 transMapRnaV5,20 transMapRnaV5,646 transMapRnaV5,670 transMapV5,19 transMapV5,141 transMapV5,752 transMapV5,776 xenoRefGene,281 produces refSeqComposite,48 products unipChain,5 program augustusGene,21 augustusGene,257 chainHg19,605 chainHg19,645 chainHg19,783 chainHg19,836 chainHg19,868 chainHg19,944 chainHg19,947 chainMm39,605 chainMm39,645 chainMm39,783 chainMm39,836 chainMm39,868 chainMm39,944 chainMm39,947 chainNetHg19,607 chainNetHg19,647 chainNetHg19,785 chainNetHg19,838 chainNetHg19,870 chainNetHg19,946 chainNetHg19,949 chainNetMm39,608 chainNetMm39,648 chainNetMm39,786 chainNetMm39,839 chainNetMm39,871 chainNetMm39,947 chainNetMm39,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netHg19,605 netHg19,645 netHg19,783 netHg19,836 netHg19,868 netHg19,944 netHg19,947 netMm39,605 netMm39,645 netMm39,783 netMm39,836 netMm39,868 netMm39,944 netMm39,947 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,313 transMapEstV5,282 transMapRefSeqV5,282 transMapRnaV5,282 transMapV5,388 uniprot,1529 programmatically refSeqComposite,1319 programs chainHg19,993 chainMm39,993 chainNetHg19,995 chainNetMm39,996 netHg19,993 netMm39,993 uniprot,1877 project refSeqComposite,1158 refSeqComposite,1725 xenoRefGene,298 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,320 transMapEstV5,289 transMapRefSeqV5,289 transMapRnaV5,289 transMapV5,395 projects transMapEnsemblV5,709 transMapEstV5,678 transMapRefSeqV5,678 transMapRnaV5,678 transMapV5,784 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,718 prot.bed uniprot,1931 uniprot,1933 protein HLTOGAannotvHg38v1,270 HLTOGAannotvHg38v1,293 HLTOGAannotvHg38v1,308 HLTOGAannotvHg38v1,311 refSeqComposite,268 refSeqComposite,361 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refSeqComposite,20 refSeqComposite,236 refSeqComposite,539 xenoRefGene,15 xenoRefGene,197 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins HLTOGAannotvHg38v1,163 HLTOGAannotvHg38v1,193 refSeqComposite,1806 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,378 protocadherin refSeqComposite,416 provide uniprot,1860 provided refSeqComposite,37 refSeqComposite,68 refSeqComposite,205 refSeqComposite,443 uniprot,817 provides HLTOGAannotvHg38v1,298 gap,32 gold,34 uniprot,489 providing augustusGene,254 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,617 refSeqComposite,666 xenoRefGene,70 pruitt refSeqComposite,1745 refSeqComposite,1787 xenoRefGene,317 xenoRefGene,359 pseudogenes HLTOGAannotvHg38v1,98 chainHg19,213 chainHg19,227 chainMm39,213 chainMm39,227 chainNetHg19,215 chainNetHg19,229 chainNetMm39,216 chainNetMm39,230 netHg19,213 netHg19,227 netMm39,213 netMm39,227 refSeqComposite,408 uniprot,1184 psl mrna,35 refSeqComposite,453 refSeqComposite,1175 refSeqComposite,1416 transMapEnsemblV5,102 transMapEstV5,71 transMapRefSeqV5,71 transMapRnaV5,71 transMapV5,177 uniprot,1479 pslcdnafilter transMapEnsemblV5,351 transMapEstV5,320 transMapRefSeqV5,320 transMapRnaV5,320 transMapV5,426 pslmap transMapEnsemblV5,312 transMapEstV5,281 transMapRefSeqV5,281 transMapRnaV5,281 transMapV5,387 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 mrna,453 refSeqComposite,1322 refSeqComposite,1625 transMapEnsemblV5,693 transMapEstV5,662 transMapRefSeqV5,662 transMapRnaV5,662 transMapV5,768 uniprot,709 publications refSeqComposite,253 refSeqComposite,423 uniprot,38 publicly nestedRepeats,275 pull-down refSeqComposite,845 xenoRefGene,171 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainHg19,717 chainMm39,717 chainNetHg19,719 chainNetMm39,720 netHg19,717 netMm39,717 quality mrna,53 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 query HLTOGAannotvHg38v1,70 HLTOGAannotvHg38v1,126 HLTOGAannotvHg38v1,175 HLTOGAannotvHg38v1,222 rmsk,47 rmsk,61 uniprot,1484 questions refSeqComposite,1689 uniprot,1834 quickly mrna,338 refSeqComposite,824 transMapEnsemblV5,122 transMapEstV5,91 transMapRefSeqV5,91 transMapRnaV5,91 transMapV5,197 xenoRefGene,150 quite simpleRepeat,45 quot chainHg19,26 chainHg19,28 chainHg19,33 chainHg19,35 chainHg19,101 chainHg19,103 chainHg19,230 chainHg19,232 chainHg19,234 chainHg19,236 chainHg19,338 chainHg19,340 chainHg19,679 chainHg19,681 chainMm39,26 chainMm39,28 chainMm39,33 chainMm39,35 chainMm39,101 chainMm39,103 chainMm39,230 chainMm39,232 chainMm39,234 chainMm39,236 chainMm39,338 chainMm39,340 chainMm39,679 chainMm39,681 chainNetHg19,28 chainNetHg19,30 chainNetHg19,35 chainNetHg19,37 chainNetHg19,103 chainNetHg19,105 chainNetHg19,232 chainNetHg19,234 chainNetHg19,236 chainNetHg19,238 chainNetHg19,340 chainNetHg19,342 chainNetHg19,681 chainNetHg19,683 chainNetMm39,29 chainNetMm39,31 chainNetMm39,36 chainNetMm39,38 chainNetMm39,104 chainNetMm39,106 chainNetMm39,233 chainNetMm39,235 chainNetMm39,237 chainNetMm39,239 chainNetMm39,341 chainNetMm39,343 chainNetMm39,682 chainNetMm39,684 gc5BaseBw,58 gc5BaseBw,62 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netHg19,26 netHg19,28 netHg19,33 netHg19,35 netHg19,101 netHg19,103 netHg19,230 netHg19,232 netHg19,234 netHg19,236 netHg19,338 netHg19,340 netHg19,679 netHg19,681 netMm39,26 netMm39,28 netMm39,33 netMm39,35 netMm39,101 netMm39,103 netMm39,230 netMm39,232 netMm39,234 netMm39,236 netMm39,338 netMm39,340 netMm39,679 netMm39,681 refSeqComposite,504 refSeqComposite,507 refSeqComposite,1430 refSeqComposite,1432 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainHg19,1043 chainHg19,1089 chainMm39,1043 chainMm39,1089 chainNetHg19,1045 chainNetHg19,1091 chainNetMm39,1046 chainNetMm39,1092 nestedRepeats,327 netHg19,1043 netHg19,1089 netMm39,1043 netMm39,1089 rmsk,350 transMapEnsemblV5,759 transMapEstV5,728 transMapRefSeqV5,728 transMapRnaV5,728 transMapV5,834 windowmaskerSdust,99 r.s chainHg19,1008 chainMm39,1008 chainNetHg19,1010 chainNetMm39,1011 netHg19,1008 netMm39,1008 random augustusGene,119 raney uniprot,1960 range gap,135 nestedRepeats,227 nestedRepeats,236 refSeqComposite,984 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1809 ranked chainHg19,780 chainMm39,780 chainNetHg19,782 chainNetMm39,783 netHg19,780 netMm39,780 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1288 transMapEnsemblV5,518 transMapEstV5,487 transMapRefSeqV5,487 transMapRnaV5,487 transMapV5,593 uniprot,1708 rc chainHg19,1091 chainMm39,1091 chainNetHg19,1093 chainNetMm39,1094 netHg19,1091 netMm39,1091 rmsk,200 read gap,94 refSeqComposite,1457 realigning refSeqComposite,50 realignment refSeqComposite,58 refSeqComposite,485 rearrangement chainHg19,289 chainHg19,492 chainHg19,1056 chainMm39,289 chainMm39,492 chainMm39,1056 chainNetHg19,291 chainNetHg19,494 chainNetHg19,1058 chainNetMm39,292 chainNetMm39,495 chainNetMm39,1059 netHg19,289 netHg19,492 netHg19,1056 netMm39,289 netMm39,492 netMm39,1056 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 recently uniprot,1186 reciprocal transMapEnsemblV5,239 transMapEstV5,208 transMapRefSeqV5,208 transMapRnaV5,208 transMapV5,65 transMapV5,314 record refSeqComposite,612 refSeqComposite,633 refSeqComposite,669 refSeqComposite,694 refSeqComposite,709 uniprot,496 xenoRefGene,65 records refSeqComposite,127 refSeqComposite,658 refer genscan,144 refSeqComposite,1682 uniprot,1827 reference HLTOGAannotvHg38v1,10 HLTOGAannotvHg38v1,51 HLTOGAannotvHg38v1,68 HLTOGAannotvHg38v1,117 ncbiRefSeqGenomicDiff,10 refSeqComposite,29 refSeqComposite,110 refSeqComposite,463 refSeqComposite,876 refSeqComposite,1086 refSeqComposite,1772 refSeqComposite,1794 uniprot,1378 uniprot,1422 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references HLTOGAannotvHg38v1,324 augustusGene,285 chainHg19,1006 chainMm39,1006 chainNetHg19,1008 chainNetMm39,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 genscan,152 genscan,179 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netHg19,1006 netMm39,1006 refSeqComposite,1726 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,1984 windowmaskerSdust,89 xenoRefGene,299 refgene refSeqComposite,1415 transMapEnsemblV5,592 transMapEstV5,561 transMapRefSeqV5,2 transMapRefSeqV5,561 transMapRnaV5,561 transMapV5,667 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,32 refSeqComposite,39 refSeqComposite,44 refSeqComposite,52 refSeqComposite,83 refSeqComposite,86 refSeqComposite,112 refSeqComposite,126 refSeqComposite,188 refSeqComposite,195 refSeqComposite,197 refSeqComposite,207 refSeqComposite,208 refSeqComposite,213 refSeqComposite,313 refSeqComposite,334 refSeqComposite,338 refSeqComposite,343 refSeqComposite,377 refSeqComposite,386 refSeqComposite,398 refSeqComposite,402 refSeqComposite,432 refSeqComposite,437 refSeqComposite,446 refSeqComposite,455 refSeqComposite,467 refSeqComposite,478 refSeqComposite,505 refSeqComposite,509 refSeqComposite,518 refSeqComposite,526 refSeqComposite,543 refSeqComposite,545 refSeqComposite,551 refSeqComposite,578 refSeqComposite,584 refSeqComposite,586 refSeqComposite,588 refSeqComposite,592 refSeqComposite,611 refSeqComposite,625 refSeqComposite,632 refSeqComposite,657 refSeqComposite,668 refSeqComposite,693 refSeqComposite,708 refSeqComposite,865 refSeqComposite,881 refSeqComposite,1092 refSeqComposite,1112 refSeqComposite,1127 refSeqComposite,1141 refSeqComposite,1144 refSeqComposite,1157 refSeqComposite,1164 refSeqComposite,1195 refSeqComposite,1205 refSeqComposite,1210 refSeqComposite,1221 refSeqComposite,1224 refSeqComposite,1352 refSeqComposite,1366 refSeqComposite,1369 refSeqComposite,1404 refSeqComposite,1407 refSeqComposite,1410 refSeqComposite,1414 refSeqComposite,1418 refSeqComposite,1568 refSeqComposite,1665 refSeqComposite,1667 refSeqComposite,1670 refSeqComposite,1724 refSeqComposite,1767 refSeqComposite,1796 transMapEnsemblV5,169 transMapEnsemblV5,704 transMapEstV5,138 transMapEstV5,673 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,138 transMapRefSeqV5,673 transMapRnaV5,138 transMapRnaV5,673 transMapV5,244 transMapV5,779 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 refseqdiffs refSeqComposite,1471 refseqother refSeqComposite,1469 regeneron uniprot,1968 region chainHg19,198 chainHg19,395 chainMm39,198 chainMm39,395 chainNetHg19,200 chainNetHg19,397 chainNetMm39,201 chainNetMm39,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netHg19,198 netHg19,395 netMm39,198 netMm39,395 refSeqComposite,987 refSeqComposite,1538 uniprot,312 regions HLTOGAannotvHg38v1,85 augustusGene,76 chainHg19,16 chainHg19,134 chainHg19,282 chainMm39,16 chainMm39,134 chainMm39,282 chainNetHg19,18 chainNetHg19,136 chainNetHg19,284 chainNetMm39,19 chainNetMm39,137 chainNetMm39,285 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netHg19,16 netHg19,134 netHg19,282 netMm39,16 netMm39,134 netMm39,282 refSeqComposite,1491 simpleRepeat,39 transMapEnsemblV5,301 transMapEnsemblV5,601 transMapEstV5,270 transMapEstV5,570 transMapRefSeqV5,270 transMapRefSeqV5,570 transMapRnaV5,270 transMapRnaV5,570 transMapV5,376 transMapV5,676 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,74 uniprot,551 relationship chainHg19,846 chainMm39,846 chainNetHg19,848 chainNetMm39,849 netHg19,846 netMm39,846 relative chainHg19,862 chainMm39,862 chainNetHg19,864 chainNetMm39,865 gap,78 gold,109 netHg19,862 netMm39,862 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1114 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant mrna,103 uniprot,681 relies HLTOGAannotvHg38v1,78 remain uniprot,1189 remaining chainHg19,685 chainMm39,685 chainNetHg19,687 chainNetMm39,688 netHg19,685 netMm39,685 removed chainHg19,576 chainMm39,576 chainNetHg19,578 chainNetMm39,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netHg19,576 netMm39,576 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,306 transMapEstV5,275 transMapRefSeqV5,275 transMapRnaV5,275 transMapV5,381 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainHg19,943 chainMm39,943 chainNetHg19,945 chainNetMm39,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netHg19,943 netMm39,943 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainHg19,935 chainMm39,935 chainNetHg19,937 chainNetMm39,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netHg19,935 netMm39,935 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,977 refSeqComposite,1005 rmsk,374 uniprot,1400 reporting refSeqComposite,1089 represent chainHg19,132 chainHg19,159 chainHg19,442 chainHg19,447 chainMm39,132 chainMm39,159 chainMm39,442 chainMm39,447 chainNetHg19,134 chainNetHg19,161 chainNetHg19,444 chainNetHg19,449 chainNetMm39,135 chainNetMm39,162 chainNetMm39,445 chainNetMm39,450 netHg19,132 netHg19,159 netHg19,442 netHg19,447 netMm39,132 netMm39,159 netMm39,442 netMm39,447 representative refSeqComposite,536 represented gap,69 rmsk,49 representing gap,112 reproducibility uniprot,1645 required refSeqComposite,906 refSeqComposite,920 requirements refSeqComposite,393 res chainHg19,1101 chainMm39,1101 chainNetHg19,1103 chainNetMm39,1104 microsat,127 mrna,477 mrna,502 mrna,522 netHg19,1101 netMm39,1101 refSeqComposite,1735 refSeqComposite,1776 refSeqComposite,1809 simpleRepeat,87 transMapEnsemblV5,744 transMapEstV5,713 transMapRefSeqV5,713 transMapRnaV5,713 transMapV5,819 uniprot,1999 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 refSeqComposite,1100 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 refSeqComposite,1306 restricted refSeqComposite,577 result chainHg19,172 chainMm39,172 chainNetHg19,174 chainNetMm39,175 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netHg19,172 netMm39,172 refSeqComposite,60 transMapEnsemblV5,504 transMapEstV5,473 transMapRefSeqV5,473 transMapRnaV5,473 transMapV5,579 uniprot,798 uniprot,1065 uniprot,1170 resulting chainHg19,595 chainMm39,595 chainNetHg19,597 chainNetMm39,598 netHg19,595 netMm39,595 refSeqComposite,284 transMapEnsemblV5,81 transMapEnsemblV5,334 transMapEnsemblV5,346 transMapEnsemblV5,491 transMapEstV5,50 transMapEstV5,303 transMapEstV5,315 transMapEstV5,460 transMapRefSeqV5,50 transMapRefSeqV5,303 transMapRefSeqV5,315 transMapRefSeqV5,460 transMapRnaV5,50 transMapRnaV5,303 transMapRnaV5,315 transMapRnaV5,460 transMapV5,51 transMapV5,409 transMapV5,421 transMapV5,566 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1098 uniprot,1463 uniprot,1649 retained uniprot,795 retroposons rmsk,173 review refSeqComposite,609 refSeqComposite,629 refSeqComposite,646 refSeqComposite,677 refSeqComposite,702 xenoRefGene,62 reviewed refSeqComposite,620 refSeqComposite,630 refSeqComposite,636 xenoRefGene,72 reviews refSeqComposite,258 riestra uniprot,1972 right refSeqComposite,971 rightmost refSeqComposite,1013 rna refSeqComposite,28 refSeqComposite,1085 refSeqComposite,1145 refSeqComposite,1206 refSeqComposite,1247 refSeqComposite,1655 rmsk,186 rmsk,189 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,564 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,564 transMapV5,670 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rna-seq refSeqComposite,74 refSeqComposite,365 rnas ncbiRefSeqPsl,6 refSeqComposite,53 refSeqComposite,438 refSeqComposite,487 refSeqComposite,1225 xenoRefGene,217 robert chainHg19,983 chainMm39,983 chainNetHg19,985 chainNetMm39,986 nestedRepeats,307 netHg19,983 netMm39,983 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainHg19,932 chainMm39,932 chainNetHg19,934 chainNetMm39,935 netHg19,932 netMm39,932 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainHg19,648 chainMm39,648 chainNetHg19,650 chainNetMm39,651 netHg19,648 netMm39,648 refSeqComposite,1605 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainHg19,1051 chainHg19,1068 chainHg19,1081 chainMm39,1051 chainMm39,1068 chainMm39,1081 chainNetHg19,1053 chainNetHg19,1070 chainNetHg19,1083 chainNetMm39,1054 chainNetMm39,1071 chainNetMm39,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netHg19,1051 netHg19,1068 netHg19,1081 netMm39,1051 netMm39,1068 netMm39,1081 refSeqComposite,105 refSeqComposite,318 refSeqComposite,465 refSeqComposite,484 refSeqComposite,1119 refSeqComposite,1204 rmsk,18 rmsk,293 transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1450 salzberg genscan,189 same chainHg19,521 chainHg19,536 chainMm39,521 chainMm39,536 chainNetHg19,523 chainNetHg19,538 chainNetMm39,524 chainNetMm39,539 nestedRepeats,143 netHg19,521 netHg19,536 netMm39,521 netMm39,536 refSeqComposite,1217 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 santa chainHg19,956 chainHg19,1001 chainMm39,956 chainMm39,1001 chainNetHg19,958 chainNetHg19,1003 chainNetMm39,959 chainNetMm39,1004 netHg19,956 netHg19,1001 netMm39,956 netMm39,1001 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers mrna,472 scaffold gap,124 gold,80 gold,118 scaffolds gap,127 scale HLTOGAannotvHg38v1,363 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainHg19,923 chainHg19,1080 chainMm39,923 chainMm39,1080 chainNetHg19,925 chainNetHg19,1082 chainNetMm39,926 chainNetMm39,1083 netHg19,923 netHg19,1080 netMm39,923 netMm39,1080 sci chainHg19,1066 chainMm39,1066 chainNetHg19,1068 chainNetMm39,1069 netHg19,1066 netMm39,1066 science HLTOGAannotvHg38v1,364 genscan,203 scientific refSeqComposite,281 uniprot,37 scientists mrna,457 refSeqComposite,1717 transMapEnsemblV5,697 transMapEstV5,666 transMapRefSeqV5,666 transMapRnaV5,666 transMapV5,772 xenoRefGene,290 score chainHg19,677 chainMm39,677 chainNetHg19,679 chainNetMm39,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netHg19,677 netMm39,677 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainHg19,77 chainHg19,87 chainHg19,656 chainHg19,673 chainHg19,1028 chainMm39,77 chainMm39,87 chainMm39,656 chainMm39,673 chainMm39,1028 chainNetHg19,79 chainNetHg19,89 chainNetHg19,658 chainNetHg19,675 chainNetHg19,1030 chainNetMm39,80 chainNetMm39,90 chainNetMm39,659 chainNetMm39,676 chainNetMm39,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netHg19,77 netHg19,87 netHg19,656 netHg19,673 netHg19,1028 netMm39,77 netMm39,87 netMm39,656 netMm39,673 netMm39,1028 scott chainHg19,922 chainMm39,922 chainNetHg19,924 chainNetMm39,925 netHg19,922 netMm39,922 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,798 transMapEstV5,767 transMapRefSeqV5,767 transMapRnaV5,767 transMapV5,873 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section genscan,153 nestedRepeats,67 refSeqComposite,91 refSeqComposite,1650 rmsk,103 uniprot,897 sections chainHg19,803 chainMm39,803 chainNetHg19,805 chainNetMm39,806 netHg19,803 netMm39,803 see augustusGene,42 genscan,57 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,88 refSeqComposite,136 refSeqComposite,336 refSeqComposite,541 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,229 transMapEnsemblV5,571 transMapEstV5,198 transMapEstV5,540 transMapRefSeqV5,198 transMapRefSeqV5,540 transMapRnaV5,198 transMapRnaV5,540 transMapV5,304 transMapV5,646 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,510 refSeqComposite,527 refSeqComposite,531 refSeqComposite,544 refSeqComposite,834 xenoRefGene,160 selected mrna,239 mrna,255 mrna,308 refSeqComposite,159 transMapEnsemblV5,212 transMapEnsemblV5,249 transMapEnsemblV5,260 transMapEnsemblV5,328 transMapEstV5,181 transMapEstV5,218 transMapEstV5,229 transMapEstV5,297 transMapRefSeqV5,181 transMapRefSeqV5,218 transMapRefSeqV5,229 transMapRefSeqV5,297 transMapRnaV5,181 transMapRnaV5,218 transMapRnaV5,229 transMapRnaV5,297 transMapV5,287 transMapV5,324 transMapV5,335 transMapV5,403 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,147 sep chainHg19,1071 chainMm39,1071 chainNetHg19,1073 chainNetMm39,1074 nestedRepeats,356 netHg19,1071 netMm39,1071 rmsk,379 separated mrna,210 seq unipConflict,1 sequence HLTOGAannotvHg38v1,150 HLTOGAannotvHg38v1,309 augustusGene,32 augustusGene,70 chainHg19,166 chainHg19,292 chainHg19,1031 chainMm39,166 chainMm39,292 chainMm39,1031 chainNetHg19,168 chainNetHg19,294 chainNetHg19,1033 chainNetMm39,169 chainNetMm39,295 chainNetMm39,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 gap,54 gold,53 gold,157 mrna,344 mrna,434 mrna,447 mrna,454 netHg19,166 netHg19,292 netHg19,1031 netMm39,166 netMm39,292 netMm39,1031 refSeqComposite,651 refSeqComposite,662 refSeqComposite,878 refSeqComposite,978 refSeqComposite,1006 refSeqComposite,1033 refSeqComposite,1045 refSeqComposite,1078 refSeqComposite,1082 refSeqComposite,1087 refSeqComposite,1282 refSeqComposite,1795 refSeqComposite,1800 rmsk,48 rmsk,62 transMapEnsemblV5,128 transMapEnsemblV5,687 transMapEnsemblV5,694 transMapEstV5,97 transMapEstV5,656 transMapEstV5,663 transMapRefSeqV5,97 transMapRefSeqV5,656 transMapRefSeqV5,663 transMapRnaV5,97 transMapRnaV5,656 transMapRnaV5,663 transMapV5,203 transMapV5,762 transMapV5,769 ucscToINSDC,7 ucscToINSDC,29 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequence-to-gene refSeqComposite,680 sequenced windowmaskerSdust,104 sequences gold,13 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,30 refSeqComposite,111 refSeqComposite,269 refSeqComposite,285 refSeqComposite,883 refSeqComposite,1093 refSeqComposite,1656 refSeqComposite,1773 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,30 xenoRefGene,345 sequencing chainHg19,885 chainMm39,885 chainNetHg19,887 chainNetMm39,888 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netHg19,885 netMm39,885 ucscToINSDC,12 server refSeqComposite,1324 refSeqComposite,1330 refSeqComposite,1346 refSeqComposite,1485 refSeqComposite,1600 refSeqComposite,1627 refSeqComposite,1679 refSeqComposite,1705 transMapEnsemblV5,558 transMapEstV5,527 transMapRefSeqV5,527 transMapRnaV5,527 transMapV5,633 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 set refSeqComposite,160 refSeqComposite,1495 refSeqComposite,1632 refSeqComposite,1695 transMapEnsemblV5,279 transMapEstV5,248 transMapRefSeqV5,248 transMapRnaV5,248 transMapV5,354 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,154 setting refSeqComposite,1037 refSeqComposite,1064 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,742 several HLTOGAannotvHg38v1,274 mrna,362 transMapEnsemblV5,137 transMapEstV5,106 transMapRefSeqV5,106 transMapRnaV5,106 transMapV5,212 shade nestedRepeats,194 shaded mrna,48 nestedRepeats,182 shades nestedRepeats,202 shading nestedRepeats,240 refSeqComposite,604 rmsk,208 rmsk,239 xenoRefGene,57 sharma HLTOGAannotvHg38v1,342 shift refSeqComposite,958 shifted refSeqComposite,967 refSeqComposite,1014 short refSeqComposite,925 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,961 shotgun gold,151 should mrna,275 show refSeqComposite,156 refSeqComposite,787 refSeqComposite,902 refSeqComposite,916 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,123 showing refSeqComposite,956 shown HLTOGAannotvHg38v1,136 chainHg19,41 chainHg19,54 chainMm39,41 chainMm39,54 chainNetHg19,43 chainNetHg19,56 chainNetMm39,44 chainNetMm39,57 gold,101 microsat,48 mrna,93 netHg19,41 netHg19,54 netMm39,41 netMm39,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainHg19,15 chainHg19,62 chainHg19,263 chainMm39,15 chainMm39,62 chainMm39,263 chainNetHg19,17 chainNetHg19,64 chainNetHg19,265 chainNetMm39,18 chainNetMm39,65 chainNetMm39,266 gap,10 gc5BaseBw,16 genscan,13 gold,11 mrna,14 nestedRepeats,17 nestedRepeats,81 netHg19,15 netHg19,62 netHg19,263 netMm39,15 netMm39,62 netMm39,263 refSeqComposite,18 refSeqComposite,1000 refSeqComposite,1011 uniprot,14 uniprot,484 xenoRefGene,13 side gap,87 siepel transMapEnsemblV5,711 transMapEstV5,680 transMapRefSeqV5,680 transMapRnaV5,680 transMapV5,786 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainHg19,99 chainMm39,99 chainNetHg19,101 chainNetMm39,102 netHg19,99 netMm39,99 since chainHg19,570 chainMm39,570 chainNetHg19,572 chainNetMm39,573 netHg19,570 netMm39,570 uniprot,1383 sine rmsk,157 single chainHg19,126 chainHg19,135 chainHg19,619 chainHg19,624 chainMm39,126 chainMm39,135 chainMm39,619 chainMm39,624 chainNetHg19,128 chainNetHg19,137 chainNetHg19,621 chainNetHg19,626 chainNetMm39,129 chainNetMm39,138 chainNetMm39,622 chainNetMm39,627 mrna,398 nestedRepeats,178 netHg19,126 netHg19,135 netHg19,619 netHg19,624 netMm39,126 netMm39,135 netMm39,619 netMm39,624 refSeqComposite,530 refSeqComposite,1246 transMapEnsemblV5,477 transMapEstV5,446 transMapRefSeqV5,446 transMapRnaV5,446 transMapV5,552 uniprot,141 xenoRefGene,238 single-lined chainHg19,206 chainMm39,206 chainNetHg19,208 chainNetMm39,209 netHg19,206 netMm39,206 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,271 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,134 skip refSeqComposite,1030 skipped refSeqComposite,1043 sm refSeqComposite,1750 xenoRefGene,322 small refSeqComposite,933 smallsize chainHg19,703 chainMm39,703 chainNetHg19,705 chainNetMm39,706 netHg19,703 netMm39,703 smit chainHg19,940 chainHg19,1084 chainMm39,940 chainMm39,1084 chainNetHg19,942 chainNetHg19,1086 chainNetMm39,943 chainNetMm39,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netHg19,940 netHg19,1084 netMm39,940 netMm39,1084 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainHg19,434 chainMm39,434 chainNetHg19,436 chainNetMm39,437 netHg19,434 netMm39,434 refSeqComposite,301 refSeqComposite,1611 uniprot,1135 uniprot,1430 society refSeqComposite,1075 soft-masked rmsk,305 software HLTOGAannotvHg38v1,327 nestedRepeats,255 refSeqComposite,376 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 mrna,101 nestedRepeats,207 refSeqComposite,656 refSeqComposite,704 rmsk,105 rmsk,268 transMapEnsemblV5,297 transMapEnsemblV5,307 transMapEstV5,266 transMapEstV5,276 transMapRefSeqV5,266 transMapRefSeqV5,276 transMapRnaV5,266 transMapRnaV5,276 transMapV5,372 transMapV5,382 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainHg19,772 chainMm39,772 chainNetHg19,774 chainNetMm39,775 netHg19,772 netMm39,772 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1512 transMapEnsemblV5,152 transMapEnsemblV5,323 transMapEnsemblV5,340 transMapEnsemblV5,404 transMapEnsemblV5,429 transMapEnsemblV5,620 transMapEnsemblV5,634 transMapEstV5,121 transMapEstV5,292 transMapEstV5,309 transMapEstV5,373 transMapEstV5,398 transMapEstV5,589 transMapEstV5,603 transMapRefSeqV5,121 transMapRefSeqV5,292 transMapRefSeqV5,309 transMapRefSeqV5,373 transMapRefSeqV5,398 transMapRefSeqV5,589 transMapRefSeqV5,603 transMapRnaV5,121 transMapRnaV5,292 transMapRnaV5,309 transMapRnaV5,373 transMapRnaV5,398 transMapRnaV5,589 transMapRnaV5,603 transMapV5,227 transMapV5,398 transMapV5,415 transMapV5,479 transMapV5,504 transMapV5,695 transMapV5,709 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space mrna,213 uniprot,1990 spaces gold,99 span chainHg19,393 chainMm39,393 chainNetHg19,395 chainNetMm39,396 netHg19,393 netMm39,393 refSeqComposite,1002 specialized simpleRepeat,29 species HLTOGAannotvHg38v1,52 HLTOGAannotvHg38v1,127 augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainHg19,116 chainHg19,169 chainHg19,188 chainHg19,891 chainMm39,116 chainMm39,169 chainMm39,188 chainMm39,891 chainNetHg19,118 chainNetHg19,171 chainNetHg19,190 chainNetHg19,893 chainNetMm39,119 chainNetMm39,172 chainNetMm39,191 chainNetMm39,894 netHg19,116 netHg19,169 netHg19,188 netHg19,891 netMm39,116 netMm39,169 netMm39,188 netMm39,891 transMapEnsemblV5,32 transMapEnsemblV5,269 transMapEstV5,30 transMapEstV5,238 transMapRefSeqV5,30 transMapRefSeqV5,238 transMapRnaV5,30 transMapRnaV5,238 transMapV5,29 transMapV5,78 transMapV5,114 transMapV5,344 species-specific augustusGene,156 specific gap,33 gold,35 mrna,140 simpleRepeat,53 specification gap,59 gold,58 specify refSeqComposite,1110 speed refSeqComposite,1438 splice augustusGene,53 genscan,156 refSeqComposite,270 uniprot,144 spliced transMapEnsemblV5,175 transMapEstV5,17 transMapEstV5,144 transMapRefSeqV5,144 transMapRnaV5,144 transMapV5,250 splicing augustusGene,123 genscan,33 genscan,186 split chainHg19,574 chainMm39,574 chainNetHg19,576 chainNetMm39,577 netHg19,574 netMm39,574 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,421 transMapEstV5,390 transMapRefSeqV5,390 transMapRnaV5,390 transMapV5,496 srprna rmsk,194 staff refSeqComposite,639 refSeqComposite,690 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 refSeqComposite,1554 transMapEnsemblV5,668 transMapEstV5,637 transMapRefSeqV5,637 transMapRnaV5,637 transMapV5,743 uniprot,125 uniprot,209 uniprot,1821 state chainHg19,917 chainHg19,1020 chainMm39,917 chainMm39,1020 chainNetHg19,919 chainNetHg19,1022 chainNetMm39,920 chainNetMm39,1023 netHg19,917 netHg19,1020 netMm39,917 netMm39,1020 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1558 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,720 transMapEstV5,689 transMapRefSeqV5,689 transMapRnaV5,689 transMapV5,795 storage chainHg19,974 chainMm39,974 chainNetHg19,976 chainNetMm39,977 netHg19,974 netMm39,974 stored refSeqComposite,1474 transMapEnsemblV5,541 transMapEstV5,510 transMapRefSeqV5,510 transMapRnaV5,510 transMapV5,616 uniprot,1733 strand chainHg19,246 chainMm39,246 chainNetHg19,248 chainNetMm39,249 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 nestedRepeats,144 nestedRepeats,155 netHg19,246 netMm39,246 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,119 strong HLTOGAannotvHg38v1,253 HLTOGAannotvHg38v1,282 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainHg19,287 chainMm39,287 chainNetHg19,289 chainNetMm39,290 netHg19,287 netMm39,287 subcellular uniprot,553 subject refSeqComposite,674 refSeqComposite,699 submit refSeqComposite,117 submitted mrna,449 transMapEnsemblV5,689 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 submodel augustusGene,331 subsections chainHg19,638 chainMm39,638 chainNetHg19,640 chainNetMm39,641 netHg19,638 netMm39,638 subsequent transMapEnsemblV5,439 transMapEstV5,408 transMapRefSeqV5,408 transMapRnaV5,408 transMapV5,514 subset microsat,54 mrna,79 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,211 refSeqComposite,341 refSeqComposite,511 refSeqComposite,516 refSeqComposite,547 refSeqComposite,549 refSeqComposite,579 refSeqComposite,791 transMapEnsemblV5,206 transMapEstV5,175 transMapRefSeqV5,175 transMapRnaV5,175 transMapV5,281 substantial chainHg19,165 chainMm39,165 chainNetHg19,167 chainNetMm39,168 netHg19,165 netMm39,165 subtrack refSeqComposite,746 refSeqComposite,758 uniprot,411 subtracks chainHg19,29 chainHg19,36 chainMm39,29 chainMm39,36 chainNetHg19,31 chainNetHg19,38 chainNetMm39,32 chainNetMm39,39 netHg19,29 netHg19,36 netMm39,29 netMm39,36 refSeqComposite,34 refSeqComposite,162 refSeqComposite,186 refSeqComposite,1394 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,178 such chainHg19,852 chainMm39,852 chainNetHg19,854 chainNetMm39,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netHg19,852 netMm39,852 refSeqComposite,412 uniprot,306 suffix transMapEnsemblV5,398 transMapEstV5,367 transMapRefSeqV5,367 transMapRnaV5,367 transMapV5,473 uniprot,1255 suggestions refSeqComposite,116 suitable uniprot,1868 suppl augustusGene,336 supported gap,92 sure refSeqComposite,1096 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainHg19,1034 chainMm39,1034 chainNetHg19,1036 chainNetMm39,1037 netHg19,1034 netMm39,1034 syn chainHg19,517 chainMm39,517 chainNetHg19,519 chainNetMm39,520 netHg19,517 netMm39,517 transMapEnsemblV5,253 transMapEstV5,222 transMapRefSeqV5,222 transMapRnaV5,222 transMapV5,328 syntenic chainHg19,281 chainHg19,859 chainMm39,281 chainMm39,859 chainNetHg19,283 chainNetHg19,861 chainNetMm39,284 chainNetMm39,862 netHg19,281 netHg19,859 netMm39,281 netMm39,859 transMapEnsemblV5,235 transMapEnsemblV5,514 transMapEstV5,204 transMapEstV5,483 transMapRefSeqV5,204 transMapRefSeqV5,483 transMapRnaV5,204 transMapRnaV5,483 transMapV5,310 transMapV5,589 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,765 transMapEstV5,45 transMapEstV5,734 transMapRefSeqV5,45 transMapRefSeqV5,734 transMapRnaV5,45 transMapRnaV5,734 transMapV5,44 transMapV5,840 synteny chainHg19,32 chainMm39,32 chainNetHg19,34 chainNetMm39,35 netHg19,32 netMm39,32 transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 synteny-filtered transMapV5,82 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainHg19,78 chainMm39,78 chainNetHg19,80 chainNetMm39,81 netHg19,78 netMm39,78 refSeqComposite,1463 refSeqComposite,1522 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1353 uniprot,1784 systems chainHg19,88 chainMm39,88 chainNetHg19,90 chainNetMm39,91 netHg19,88 netMm39,88 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 refSeqComposite,1790 xenoRefGene,362 t-123-31-11491 chainHg19,671 chainMm39,671 chainNetHg19,673 chainNetMm39,674 netHg19,671 netMm39,671 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 mrna,165 mrna,168 mrna,187 refSeqComposite,1176 refSeqComposite,1308 refSeqComposite,1353 refSeqComposite,1570 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,81 refSeqComposite,1314 refSeqComposite,1399 refSeqComposite,1428 uniprot,1301 tablesize chainHg19,701 chainMm39,701 chainNetHg19,703 chainNetMm39,704 netHg19,701 netMm39,701 taken refSeqComposite,24 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,506 transMapEstV5,475 transMapRefSeqV5,475 transMapRnaV5,475 transMapV5,581 targeted transMapEnsemblV5,734 transMapEstV5,703 transMapRefSeqV5,703 transMapRnaV5,703 transMapV5,809 targeting refSeqComposite,580 task mrna,107 tatusova refSeqComposite,1789 xenoRefGene,361 tblastn uniprot,1476 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term mrna,114 terminal rmsk,167 terminology refSeqComposite,1071 terms mrna,158 mrna,204 text mrna,121 mrna,161 mrna,201 uniprot,1763 tgap chainHg19,729 chainMm39,729 chainNetHg19,731 chainNetMm39,732 netHg19,729 netMm39,729 th transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 than chainHg19,83 chainHg19,506 chainMm39,83 chainMm39,506 chainNetHg19,85 chainNetHg19,508 chainNetMm39,86 chainNetMm39,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 mrna,226 nestedRepeats,213 nestedRepeats,271 netHg19,83 netHg19,506 netMm39,83 netMm39,506 refSeqComposite,1240 transMapEnsemblV5,223 transMapEnsemblV5,373 transMapEstV5,192 transMapEstV5,342 transMapRefSeqV5,192 transMapRefSeqV5,342 transMapRnaV5,192 transMapRnaV5,342 transMapV5,107 transMapV5,148 transMapV5,298 transMapV5,448 xenoRefGene,22 xenoRefGene,232 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that HLTOGAannotvHg38v1,28 HLTOGAannotvHg38v1,77 HLTOGAannotvHg38v1,284 chainHg19,20 chainHg19,45 chainHg19,79 chainHg19,139 chainHg19,163 chainHg19,365 chainHg19,392 chainHg19,414 chainHg19,566 chainHg19,822 chainHg19,833 chainMm39,20 chainMm39,45 chainMm39,79 chainMm39,139 chainMm39,163 chainMm39,365 chainMm39,392 chainMm39,414 chainMm39,566 chainMm39,822 chainMm39,833 chainNetHg19,22 chainNetHg19,47 chainNetHg19,81 chainNetHg19,141 chainNetHg19,165 chainNetHg19,367 chainNetHg19,394 chainNetHg19,416 chainNetHg19,568 chainNetHg19,824 chainNetHg19,835 chainNetMm39,23 chainNetMm39,48 chainNetMm39,82 chainNetMm39,142 chainNetMm39,166 chainNetMm39,368 chainNetMm39,395 chainNetMm39,417 chainNetMm39,569 chainNetMm39,825 chainNetMm39,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 genscan,141 gold,74 gold,144 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netHg19,20 netHg19,45 netHg19,79 netHg19,139 netHg19,163 netHg19,365 netHg19,392 netHg19,414 netHg19,566 netHg19,822 netHg19,833 netMm39,20 netMm39,45 netMm39,79 netMm39,139 netMm39,163 netMm39,365 netMm39,392 netMm39,414 netMm39,566 netMm39,822 netMm39,833 refSeqComposite,150 refSeqComposite,170 refSeqComposite,215 refSeqComposite,345 refSeqComposite,388 refSeqComposite,820 refSeqComposite,930 refSeqComposite,1021 refSeqComposite,1029 refSeqComposite,1054 refSeqComposite,1097 refSeqComposite,1617 rmsk,42 rmsk,259 transMapEnsemblV5,117 transMapEnsemblV5,193 transMapEnsemblV5,497 transMapEstV5,86 transMapEstV5,162 transMapEstV5,466 transMapRefSeqV5,86 transMapRefSeqV5,162 transMapRefSeqV5,466 transMapRnaV5,86 transMapRnaV5,162 transMapRnaV5,466 transMapV5,192 transMapV5,268 transMapV5,572 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,146 the HLTOGAannotvHg38v1,67 HLTOGAannotvHg38v1,108 HLTOGAannotvHg38v1,120 HLTOGAannotvHg38v1,125 HLTOGAannotvHg38v1,147 HLTOGAannotvHg38v1,169 HLTOGAannotvHg38v1,174 HLTOGAannotvHg38v1,177 HLTOGAannotvHg38v1,181 HLTOGAannotvHg38v1,195 HLTOGAannotvHg38v1,202 HLTOGAannotvHg38v1,216 HLTOGAannotvHg38v1,221 HLTOGAannotvHg38v1,224 HLTOGAannotvHg38v1,228 HLTOGAannotvHg38v1,243 HLTOGAannotvHg38v1,247 HLTOGAannotvHg38v1,257 HLTOGAannotvHg38v1,285 HLTOGAannotvHg38v1,302 HLTOGAannotvHg38v1,307 HLTOGAannotvHg38v1,320 HLTOGAannotvHg38v1,325 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainHg19,18 chainHg19,37 chainHg19,59 chainHg19,71 chainHg19,117 chainHg19,130 chainHg19,147 chainHg19,154 chainHg19,200 chainHg19,203 chainHg19,229 chainHg19,239 chainHg19,244 chainHg19,252 chainHg19,260 chainHg19,264 chainHg19,273 chainHg19,290 chainHg19,299 chainHg19,313 chainHg19,328 chainHg19,334 chainHg19,337 chainHg19,352 chainHg19,358 chainHg19,362 chainHg19,382 chainHg19,388 chainHg19,402 chainHg19,420 chainHg19,437 chainHg19,440 chainHg19,445 chainHg19,458 chainHg19,471 chainHg19,473 chainHg19,480 chainHg19,483 chainHg19,490 chainHg19,496 chainHg19,509 chainHg19,520 chainHg19,524 chainHg19,527 chainHg19,535 chainHg19,539 chainHg19,545 chainHg19,556 chainHg19,559 chainHg19,571 chainHg19,578 chainHg19,580 chainHg19,588 chainHg19,594 chainHg19,603 chainHg19,606 chainHg19,636 chainHg19,641 chainHg19,650 chainHg19,654 chainHg19,661 chainHg19,684 chainHg19,692 chainHg19,762 chainHg19,766 chainHg19,774 chainHg19,778 chainHg19,782 chainHg19,790 chainHg19,835 chainHg19,845 chainHg19,864 chainHg19,867 chainHg19,879 chainHg19,903 chainHg19,945 chainHg19,951 chainHg19,969 chainHg19,976 chainHg19,988 chainHg19,997 chainHg19,1018 chainHg19,1058 chainMm39,18 chainMm39,37 chainMm39,59 chainMm39,71 chainMm39,117 chainMm39,130 chainMm39,147 chainMm39,154 chainMm39,200 chainMm39,203 chainMm39,229 chainMm39,239 chainMm39,244 chainMm39,252 chainMm39,260 chainMm39,264 chainMm39,273 chainMm39,290 chainMm39,299 chainMm39,313 chainMm39,328 chainMm39,334 chainMm39,337 chainMm39,352 chainMm39,358 chainMm39,362 chainMm39,382 chainMm39,388 chainMm39,402 chainMm39,420 chainMm39,437 chainMm39,440 chainMm39,445 chainMm39,458 chainMm39,471 chainMm39,473 chainMm39,480 chainMm39,483 chainMm39,490 chainMm39,496 chainMm39,509 chainMm39,520 chainMm39,524 chainMm39,527 chainMm39,535 chainMm39,539 chainMm39,545 chainMm39,556 chainMm39,559 chainMm39,571 chainMm39,578 chainMm39,580 chainMm39,588 chainMm39,594 chainMm39,603 chainMm39,606 chainMm39,636 chainMm39,641 chainMm39,650 chainMm39,654 chainMm39,661 chainMm39,684 chainMm39,692 chainMm39,762 chainMm39,766 chainMm39,774 chainMm39,778 chainMm39,782 chainMm39,790 chainMm39,835 chainMm39,845 chainMm39,864 chainMm39,867 chainMm39,879 chainMm39,903 chainMm39,945 chainMm39,951 chainMm39,969 chainMm39,976 chainMm39,988 chainMm39,997 chainMm39,1018 chainMm39,1058 chainNetHg19,20 chainNetHg19,39 chainNetHg19,61 chainNetHg19,73 chainNetHg19,119 chainNetHg19,132 chainNetHg19,149 chainNetHg19,156 chainNetHg19,202 chainNetHg19,205 chainNetHg19,231 chainNetHg19,241 chainNetHg19,246 chainNetHg19,254 chainNetHg19,262 chainNetHg19,266 chainNetHg19,275 chainNetHg19,292 chainNetHg19,301 chainNetHg19,315 chainNetHg19,330 chainNetHg19,336 chainNetHg19,339 chainNetHg19,354 chainNetHg19,360 chainNetHg19,364 chainNetHg19,384 chainNetHg19,390 chainNetHg19,404 chainNetHg19,422 chainNetHg19,439 chainNetHg19,442 chainNetHg19,447 chainNetHg19,460 chainNetHg19,473 chainNetHg19,475 chainNetHg19,482 chainNetHg19,485 chainNetHg19,492 chainNetHg19,498 chainNetHg19,511 chainNetHg19,522 chainNetHg19,526 chainNetHg19,529 chainNetHg19,537 chainNetHg19,541 chainNetHg19,547 chainNetHg19,558 chainNetHg19,561 chainNetHg19,573 chainNetHg19,580 chainNetHg19,582 chainNetHg19,590 chainNetHg19,596 chainNetHg19,605 chainNetHg19,608 chainNetHg19,638 chainNetHg19,643 chainNetHg19,652 chainNetHg19,656 chainNetHg19,663 chainNetHg19,686 chainNetHg19,694 chainNetHg19,764 chainNetHg19,768 chainNetHg19,776 chainNetHg19,780 chainNetHg19,784 chainNetHg19,792 chainNetHg19,837 chainNetHg19,847 chainNetHg19,866 chainNetHg19,869 chainNetHg19,881 chainNetHg19,905 chainNetHg19,947 chainNetHg19,953 chainNetHg19,971 chainNetHg19,978 chainNetHg19,990 chainNetHg19,999 chainNetHg19,1020 chainNetHg19,1060 chainNetMm39,21 chainNetMm39,40 chainNetMm39,62 chainNetMm39,74 chainNetMm39,120 chainNetMm39,133 chainNetMm39,150 chainNetMm39,157 chainNetMm39,203 chainNetMm39,206 chainNetMm39,232 chainNetMm39,242 chainNetMm39,247 chainNetMm39,255 chainNetMm39,263 chainNetMm39,267 chainNetMm39,276 chainNetMm39,293 chainNetMm39,302 chainNetMm39,316 chainNetMm39,331 chainNetMm39,337 chainNetMm39,340 chainNetMm39,355 chainNetMm39,361 chainNetMm39,365 chainNetMm39,385 chainNetMm39,391 chainNetMm39,405 chainNetMm39,423 chainNetMm39,440 chainNetMm39,443 chainNetMm39,448 chainNetMm39,461 chainNetMm39,474 chainNetMm39,476 chainNetMm39,483 chainNetMm39,486 chainNetMm39,493 chainNetMm39,499 chainNetMm39,512 chainNetMm39,523 chainNetMm39,527 chainNetMm39,530 chainNetMm39,538 chainNetMm39,542 chainNetMm39,548 chainNetMm39,559 chainNetMm39,562 chainNetMm39,574 chainNetMm39,581 chainNetMm39,583 chainNetMm39,591 chainNetMm39,597 chainNetMm39,606 chainNetMm39,609 chainNetMm39,639 chainNetMm39,644 chainNetMm39,653 chainNetMm39,657 chainNetMm39,664 chainNetMm39,687 chainNetMm39,695 chainNetMm39,765 chainNetMm39,769 chainNetMm39,777 chainNetMm39,781 chainNetMm39,785 chainNetMm39,793 chainNetMm39,838 chainNetMm39,848 chainNetMm39,867 chainNetMm39,870 chainNetMm39,882 chainNetMm39,906 chainNetMm39,948 chainNetMm39,954 chainNetMm39,972 chainNetMm39,979 chainNetMm39,991 chainNetMm39,1000 chainNetMm39,1021 chainNetMm39,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netHg19,18 netHg19,37 netHg19,59 netHg19,71 netHg19,117 netHg19,130 netHg19,147 netHg19,154 netHg19,200 netHg19,203 netHg19,229 netHg19,239 netHg19,244 netHg19,252 netHg19,260 netHg19,264 netHg19,273 netHg19,290 netHg19,299 netHg19,313 netHg19,328 netHg19,334 netHg19,337 netHg19,352 netHg19,358 netHg19,362 netHg19,382 netHg19,388 netHg19,402 netHg19,420 netHg19,437 netHg19,440 netHg19,445 netHg19,458 netHg19,471 netHg19,473 netHg19,480 netHg19,483 netHg19,490 netHg19,496 netHg19,509 netHg19,520 netHg19,524 netHg19,527 netHg19,535 netHg19,539 netHg19,545 netHg19,556 netHg19,559 netHg19,571 netHg19,578 netHg19,580 netHg19,588 netHg19,594 netHg19,603 netHg19,606 netHg19,636 netHg19,641 netHg19,650 netHg19,654 netHg19,661 netHg19,684 netHg19,692 netHg19,762 netHg19,766 netHg19,774 netHg19,778 netHg19,782 netHg19,790 netHg19,835 netHg19,845 netHg19,864 netHg19,867 netHg19,879 netHg19,903 netHg19,945 netHg19,951 netHg19,969 netHg19,976 netHg19,988 netHg19,997 netHg19,1018 netHg19,1058 netMm39,18 netMm39,37 netMm39,59 netMm39,71 netMm39,117 netMm39,130 netMm39,147 netMm39,154 netMm39,200 netMm39,203 netMm39,229 netMm39,239 netMm39,244 netMm39,252 netMm39,260 netMm39,264 netMm39,273 netMm39,290 netMm39,299 netMm39,313 netMm39,328 netMm39,334 netMm39,337 netMm39,352 netMm39,358 netMm39,362 netMm39,382 netMm39,388 netMm39,402 netMm39,420 netMm39,437 netMm39,440 netMm39,445 netMm39,458 netMm39,471 netMm39,473 netMm39,480 netMm39,483 netMm39,490 netMm39,496 netMm39,509 netMm39,520 netMm39,524 netMm39,527 netMm39,535 netMm39,539 netMm39,545 netMm39,556 netMm39,559 netMm39,571 netMm39,578 netMm39,580 netMm39,588 netMm39,594 netMm39,603 netMm39,606 netMm39,636 netMm39,641 netMm39,650 netMm39,654 netMm39,661 netMm39,684 netMm39,692 netMm39,762 netMm39,766 netMm39,774 netMm39,778 netMm39,782 netMm39,790 netMm39,835 netMm39,845 netMm39,864 netMm39,867 netMm39,879 netMm39,903 netMm39,945 netMm39,951 netMm39,969 netMm39,976 netMm39,988 netMm39,997 netMm39,1018 netMm39,1058 refSeqComposite,12 refSeqComposite,26 refSeqComposite,42 refSeqComposite,51 refSeqComposite,55 refSeqComposite,65 refSeqComposite,89 refSeqComposite,97 refSeqComposite,132 refSeqComposite,164 refSeqComposite,168 refSeqComposite,184 refSeqComposite,239 refSeqComposite,280 refSeqComposite,283 refSeqComposite,289 refSeqComposite,306 refSeqComposite,312 refSeqComposite,324 refSeqComposite,332 refSeqComposite,368 refSeqComposite,372 refSeqComposite,385 refSeqComposite,392 refSeqComposite,397 refSeqComposite,401 refSeqComposite,440 refSeqComposite,445 refSeqComposite,449 refSeqComposite,461 refSeqComposite,494 refSeqComposite,503 refSeqComposite,525 refSeqComposite,556 refSeqComposite,567 refSeqComposite,575 refSeqComposite,583 refSeqComposite,595 refSeqComposite,602 refSeqComposite,606 refSeqComposite,610 refSeqComposite,631 refSeqComposite,644 refSeqComposite,654 refSeqComposite,667 refSeqComposite,678 refSeqComposite,692 refSeqComposite,707 refSeqComposite,712 refSeqComposite,728 refSeqComposite,732 refSeqComposite,735 refSeqComposite,741 refSeqComposite,748 refSeqComposite,753 refSeqComposite,757 refSeqComposite,770 refSeqComposite,776 refSeqComposite,784 refSeqComposite,796 refSeqComposite,807 refSeqComposite,835 refSeqComposite,840 refSeqComposite,855 refSeqComposite,864 refSeqComposite,875 refSeqComposite,880 refSeqComposite,884 refSeqComposite,903 refSeqComposite,909 refSeqComposite,917 refSeqComposite,923 refSeqComposite,973 refSeqComposite,997 refSeqComposite,1001 refSeqComposite,1004 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1047 refSeqComposite,1059 refSeqComposite,1106 refSeqComposite,1111 refSeqComposite,1117 refSeqComposite,1126 refSeqComposite,1140 refSeqComposite,1155 refSeqComposite,1172 refSeqComposite,1181 refSeqComposite,1186 refSeqComposite,1194 refSeqComposite,1208 refSeqComposite,1216 refSeqComposite,1229 refSeqComposite,1252 refSeqComposite,1255 refSeqComposite,1271 refSeqComposite,1280 refSeqComposite,1287 refSeqComposite,1305 refSeqComposite,1313 refSeqComposite,1334 refSeqComposite,1341 refSeqComposite,1362 refSeqComposite,1365 refSeqComposite,1382 refSeqComposite,1392 refSeqComposite,1421 refSeqComposite,1444 refSeqComposite,1460 refSeqComposite,1465 refSeqComposite,1468 refSeqComposite,1493 refSeqComposite,1511 refSeqComposite,1524 refSeqComposite,1542 refSeqComposite,1567 refSeqComposite,1572 refSeqComposite,1576 refSeqComposite,1588 refSeqComposite,1593 refSeqComposite,1597 refSeqComposite,1601 refSeqComposite,1607 refSeqComposite,1639 refSeqComposite,1644 refSeqComposite,1647 refSeqComposite,1654 refSeqComposite,1664 refSeqComposite,1693 refSeqComposite,1722 refSeqComposite,1730 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,98 transMapEnsemblV5,119 transMapEnsemblV5,126 transMapEnsemblV5,161 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,208 transMapEnsemblV5,251 transMapEnsemblV5,255 transMapEnsemblV5,259 transMapEnsemblV5,271 transMapEnsemblV5,277 transMapEnsemblV5,294 transMapEnsemblV5,302 transMapEnsemblV5,309 transMapEnsemblV5,311 transMapEnsemblV5,322 transMapEnsemblV5,327 transMapEnsemblV5,331 transMapEnsemblV5,339 transMapEnsemblV5,343 transMapEnsemblV5,345 transMapEnsemblV5,376 transMapEnsemblV5,403 transMapEnsemblV5,413 transMapEnsemblV5,416 transMapEnsemblV5,438 transMapEnsemblV5,447 transMapEnsemblV5,460 transMapEnsemblV5,470 transMapEnsemblV5,482 transMapEnsemblV5,503 transMapEnsemblV5,517 transMapEnsemblV5,528 transMapEnsemblV5,532 transMapEnsemblV5,538 transMapEnsemblV5,577 transMapEnsemblV5,585 transMapEnsemblV5,603 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,691 transMapEnsemblV5,703 transMapEnsemblV5,805 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,67 transMapEstV5,88 transMapEstV5,95 transMapEstV5,130 transMapEstV5,147 transMapEstV5,170 transMapEstV5,177 transMapEstV5,220 transMapEstV5,224 transMapEstV5,228 transMapEstV5,240 transMapEstV5,246 transMapEstV5,263 transMapEstV5,271 transMapEstV5,278 transMapEstV5,280 transMapEstV5,291 transMapEstV5,296 transMapEstV5,300 transMapEstV5,308 transMapEstV5,312 transMapEstV5,314 transMapEstV5,345 transMapEstV5,372 transMapEstV5,382 transMapEstV5,385 transMapEstV5,407 transMapEstV5,416 transMapEstV5,429 transMapEstV5,439 transMapEstV5,451 transMapEstV5,472 transMapEstV5,486 transMapEstV5,497 transMapEstV5,501 transMapEstV5,507 transMapEstV5,546 transMapEstV5,554 transMapEstV5,572 transMapEstV5,588 transMapEstV5,611 transMapEstV5,660 transMapEstV5,672 transMapEstV5,774 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,67 transMapRefSeqV5,88 transMapRefSeqV5,95 transMapRefSeqV5,130 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,177 transMapRefSeqV5,220 transMapRefSeqV5,224 transMapRefSeqV5,228 transMapRefSeqV5,240 transMapRefSeqV5,246 transMapRefSeqV5,263 transMapRefSeqV5,271 transMapRefSeqV5,278 transMapRefSeqV5,280 transMapRefSeqV5,291 transMapRefSeqV5,296 transMapRefSeqV5,300 transMapRefSeqV5,308 transMapRefSeqV5,312 transMapRefSeqV5,314 transMapRefSeqV5,345 transMapRefSeqV5,372 transMapRefSeqV5,382 transMapRefSeqV5,385 transMapRefSeqV5,407 transMapRefSeqV5,416 transMapRefSeqV5,429 transMapRefSeqV5,439 transMapRefSeqV5,451 transMapRefSeqV5,472 transMapRefSeqV5,486 transMapRefSeqV5,497 transMapRefSeqV5,501 transMapRefSeqV5,507 transMapRefSeqV5,546 transMapRefSeqV5,554 transMapRefSeqV5,572 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,660 transMapRefSeqV5,672 transMapRefSeqV5,774 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,67 transMapRnaV5,88 transMapRnaV5,95 transMapRnaV5,130 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,177 transMapRnaV5,220 transMapRnaV5,224 transMapRnaV5,228 transMapRnaV5,240 transMapRnaV5,246 transMapRnaV5,263 transMapRnaV5,271 transMapRnaV5,278 transMapRnaV5,280 transMapRnaV5,291 transMapRnaV5,296 transMapRnaV5,300 transMapRnaV5,308 transMapRnaV5,312 transMapRnaV5,314 transMapRnaV5,345 transMapRnaV5,372 transMapRnaV5,382 transMapRnaV5,385 transMapRnaV5,407 transMapRnaV5,416 transMapRnaV5,429 transMapRnaV5,439 transMapRnaV5,451 transMapRnaV5,472 transMapRnaV5,486 transMapRnaV5,497 transMapRnaV5,501 transMapRnaV5,507 transMapRnaV5,546 transMapRnaV5,554 transMapRnaV5,572 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,660 transMapRnaV5,672 transMapRnaV5,774 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,91 transMapV5,98 transMapV5,103 transMapV5,121 transMapV5,126 transMapV5,132 transMapV5,136 transMapV5,173 transMapV5,194 transMapV5,201 transMapV5,236 transMapV5,253 transMapV5,276 transMapV5,283 transMapV5,326 transMapV5,330 transMapV5,334 transMapV5,346 transMapV5,352 transMapV5,369 transMapV5,377 transMapV5,384 transMapV5,386 transMapV5,397 transMapV5,402 transMapV5,406 transMapV5,414 transMapV5,418 transMapV5,420 transMapV5,451 transMapV5,478 transMapV5,488 transMapV5,491 transMapV5,513 transMapV5,522 transMapV5,535 transMapV5,545 transMapV5,557 transMapV5,578 transMapV5,592 transMapV5,603 transMapV5,607 transMapV5,613 transMapV5,652 transMapV5,660 transMapV5,678 transMapV5,694 transMapV5,717 transMapV5,766 transMapV5,778 transMapV5,880 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainHg19,797 chainMm39,797 chainNetHg19,799 chainNetMm39,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netHg19,797 netMm39,797 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainHg19,647 chainHg19,786 chainHg19,871 chainMm39,647 chainMm39,786 chainMm39,871 chainNetHg19,649 chainNetHg19,788 chainNetHg19,873 chainNetMm39,650 chainNetMm39,789 chainNetMm39,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netHg19,647 netHg19,786 netHg19,871 netMm39,647 netMm39,786 netMm39,871 transMapV5,129 uniprot,1083 uniprot,1516 there HLTOGAannotvHg38v1,237 HLTOGAannotvHg38v1,280 cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 transMapEnsemblV5,450 transMapEstV5,419 transMapRefSeqV5,419 transMapRnaV5,419 transMapV5,525 uniprot,705 uniprot,1092 therefore gold,122 refSeqComposite,1630 uniprot,968 uniprot,1145 these HLTOGAannotvHg38v1,158 HLTOGAannotvHg38v1,187 HLTOGAannotvHg38v1,261 augustusGene,95 augustusGene,190 chainHg19,52 chainHg19,100 chainHg19,407 chainHg19,659 chainMm39,52 chainMm39,100 chainMm39,407 chainMm39,659 chainNetHg19,54 chainNetHg19,102 chainNetHg19,409 chainNetHg19,661 chainNetMm39,55 chainNetMm39,103 chainNetMm39,410 chainNetMm39,662 microsat,24 nestedRepeats,262 nestedRepeats,266 netHg19,52 netHg19,100 netHg19,407 netHg19,659 netMm39,52 netMm39,100 netMm39,407 netMm39,659 refSeqComposite,321 refSeqComposite,331 refSeqComposite,793 refSeqComposite,1291 refSeqComposite,1427 rmsk,235 simpleRepeat,33 transMapEnsemblV5,457 transMapEnsemblV5,466 transMapEnsemblV5,521 transMapEnsemblV5,582 transMapEstV5,426 transMapEstV5,435 transMapEstV5,490 transMapEstV5,551 transMapRefSeqV5,426 transMapRefSeqV5,435 transMapRefSeqV5,490 transMapRefSeqV5,551 transMapRnaV5,426 transMapRnaV5,435 transMapRnaV5,490 transMapRnaV5,551 transMapV5,12 transMapV5,532 transMapV5,541 transMapV5,596 transMapV5,657 uniprot,99 uniprot,130 uniprot,1160 thesis chainHg19,1017 chainMm39,1017 chainNetHg19,1019 chainNetMm39,1020 netHg19,1017 netMm39,1017 they chainHg19,324 chainMm39,324 chainNetHg19,326 chainNetMm39,327 netHg19,324 netMm39,324 refSeqComposite,247 refSeqComposite,291 refSeqComposite,356 refSeqComposite,418 uniprot,179 thibaud-nissen refSeqComposite,1751 xenoRefGene,323 thick chainHg19,43 chainMm39,43 chainNetHg19,45 chainNetMm39,46 netHg19,43 netMm39,43 refSeqComposite,993 refSeqComposite,1009 thin refSeqComposite,991 refSeqComposite,998 this HLTOGAannotvHg38v1,315 augustusGene,13 augustusGene,106 augustusGene,224 chainHg19,13 chainHg19,170 chainHg19,295 chainHg19,394 chainHg19,690 chainHg19,812 chainMm39,13 chainMm39,170 chainMm39,295 chainMm39,394 chainMm39,690 chainMm39,812 chainNetHg19,15 chainNetHg19,172 chainNetHg19,297 chainNetHg19,396 chainNetHg19,692 chainNetHg19,814 chainNetMm39,16 chainNetMm39,173 chainNetMm39,298 chainNetMm39,397 chainNetMm39,693 chainNetMm39,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netHg19,13 netHg19,170 netHg19,295 netHg19,394 netHg19,690 netHg19,812 netMm39,13 netMm39,170 netMm39,295 netMm39,394 netMm39,690 netMm39,812 refSeqComposite,57 refSeqComposite,144 refSeqComposite,497 refSeqComposite,561 refSeqComposite,722 refSeqComposite,812 refSeqComposite,851 refSeqComposite,1385 refSeqComposite,1433 refSeqComposite,1621 refSeqComposite,1707 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,95 transMapEnsemblV5,105 transMapEnsemblV5,133 transMapEnsemblV5,286 transMapEnsemblV5,674 transMapEstV5,13 transMapEstV5,64 transMapEstV5,74 transMapEstV5,102 transMapEstV5,255 transMapEstV5,643 transMapRefSeqV5,14 transMapRefSeqV5,64 transMapRefSeqV5,74 transMapRefSeqV5,102 transMapRefSeqV5,255 transMapRefSeqV5,643 transMapRnaV5,14 transMapRnaV5,64 transMapRnaV5,74 transMapRnaV5,102 transMapRnaV5,255 transMapRnaV5,643 transMapV5,170 transMapV5,180 transMapV5,208 transMapV5,361 transMapV5,749 ucscToINSDC,14 ucscToINSDC,46 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those microsat,62 mrna,314 nestedRepeats,272 refSeqComposite,218 refSeqComposite,347 refSeqComposite,1234 uniprot,729 xenoRefGene,226 thousands chainHg19,250 chainMm39,250 chainNetHg19,252 chainNetMm39,253 netHg19,250 netMm39,250 three uniprot,1227 three-step uniprot,989 through gap,108 nestedRepeats,97 refSeqComposite,727 refSeqComposite,1320 refSeqComposite,1358 rmsk,309 transMapEnsemblV5,527 transMapEstV5,496 transMapRefSeqV5,496 transMapRnaV5,496 transMapV5,602 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,88 thus HLTOGAannotvHg38v1,279 time chainHg19,795 chainMm39,795 chainNetHg19,797 chainNetMm39,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netHg19,795 netMm39,795 tissue mrna,150 mrna,185 mrna,200 tissues mrna,193 to HLTOGAannotvHg38v1,18 HLTOGAannotvHg38v1,90 HLTOGAannotvHg38v1,99 HLTOGAannotvHg38v1,106 HLTOGAannotvHg38v1,208 HLTOGAannotvHg38v1,255 HLTOGAannotvHg38v1,289 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainHg19,23 chainHg19,70 chainHg19,143 chainHg19,211 chainHg19,223 chainHg19,315 chainHg19,326 chainHg19,331 chainHg19,343 chainHg19,349 chainHg19,372 chainHg19,453 chainHg19,467 chainHg19,551 chainHg19,652 chainHg19,788 chainHg19,800 chainHg19,840 chainHg19,863 chainHg19,873 chainMm39,23 chainMm39,70 chainMm39,143 chainMm39,211 chainMm39,223 chainMm39,315 chainMm39,326 chainMm39,331 chainMm39,343 chainMm39,349 chainMm39,372 chainMm39,453 chainMm39,467 chainMm39,551 chainMm39,652 chainMm39,788 chainMm39,800 chainMm39,840 chainMm39,863 chainMm39,873 chainNetHg19,25 chainNetHg19,72 chainNetHg19,145 chainNetHg19,213 chainNetHg19,225 chainNetHg19,317 chainNetHg19,328 chainNetHg19,333 chainNetHg19,345 chainNetHg19,351 chainNetHg19,374 chainNetHg19,455 chainNetHg19,469 chainNetHg19,553 chainNetHg19,654 chainNetHg19,790 chainNetHg19,802 chainNetHg19,842 chainNetHg19,865 chainNetHg19,875 chainNetMm39,26 chainNetMm39,73 chainNetMm39,146 chainNetMm39,214 chainNetMm39,226 chainNetMm39,318 chainNetMm39,329 chainNetMm39,334 chainNetMm39,346 chainNetMm39,352 chainNetMm39,375 chainNetMm39,456 chainNetMm39,470 chainNetMm39,554 chainNetMm39,655 chainNetMm39,791 chainNetMm39,803 chainNetMm39,843 chainNetMm39,866 chainNetMm39,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netHg19,23 netHg19,70 netHg19,143 netHg19,211 netHg19,223 netHg19,315 netHg19,326 netHg19,331 netHg19,343 netHg19,349 netHg19,372 netHg19,453 netHg19,467 netHg19,551 netHg19,652 netHg19,788 netHg19,800 netHg19,840 netHg19,863 netHg19,873 netMm39,23 netMm39,70 netMm39,143 netMm39,211 netMm39,223 netMm39,315 netMm39,326 netMm39,331 netMm39,343 netMm39,349 netMm39,372 netMm39,453 netMm39,467 netMm39,551 netMm39,652 netMm39,788 netMm39,800 netMm39,840 netMm39,863 netMm39,873 refSeqComposite,54 refSeqComposite,114 refSeqComposite,155 refSeqComposite,167 refSeqComposite,173 refSeqComposite,305 refSeqComposite,308 refSeqComposite,323 refSeqComposite,367 refSeqComposite,439 refSeqComposite,493 refSeqComposite,675 refSeqComposite,700 refSeqComposite,739 refSeqComposite,752 refSeqComposite,774 refSeqComposite,823 refSeqComposite,830 refSeqComposite,854 refSeqComposite,901 refSeqComposite,907 refSeqComposite,915 refSeqComposite,921 refSeqComposite,934 refSeqComposite,976 refSeqComposite,1025 refSeqComposite,1058 refSeqComposite,1094 refSeqComposite,1105 refSeqComposite,1171 refSeqComposite,1437 refSeqComposite,1531 refSeqComposite,1584 refSeqComposite,1683 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,111 transMapEnsemblV5,121 transMapEnsemblV5,177 transMapEnsemblV5,200 transMapEnsemblV5,258 transMapEnsemblV5,291 transMapEnsemblV5,299 transMapEnsemblV5,316 transMapEnsemblV5,330 transMapEnsemblV5,342 transMapEnsemblV5,381 transMapEnsemblV5,426 transMapEnsemblV5,436 transMapEnsemblV5,469 transMapEnsemblV5,475 transMapEnsemblV5,488 transMapEnsemblV5,648 transMapEnsemblV5,690 transMapEnsemblV5,769 transMapEstV5,80 transMapEstV5,90 transMapEstV5,146 transMapEstV5,169 transMapEstV5,227 transMapEstV5,260 transMapEstV5,268 transMapEstV5,285 transMapEstV5,299 transMapEstV5,311 transMapEstV5,350 transMapEstV5,395 transMapEstV5,405 transMapEstV5,438 transMapEstV5,444 transMapEstV5,457 transMapEstV5,617 transMapEstV5,659 transMapEstV5,738 transMapRefSeqV5,80 transMapRefSeqV5,90 transMapRefSeqV5,146 transMapRefSeqV5,169 transMapRefSeqV5,227 transMapRefSeqV5,260 transMapRefSeqV5,268 transMapRefSeqV5,285 transMapRefSeqV5,299 transMapRefSeqV5,311 transMapRefSeqV5,350 transMapRefSeqV5,395 transMapRefSeqV5,405 transMapRefSeqV5,438 transMapRefSeqV5,444 transMapRefSeqV5,457 transMapRefSeqV5,617 transMapRefSeqV5,659 transMapRefSeqV5,738 transMapRnaV5,80 transMapRnaV5,90 transMapRnaV5,146 transMapRnaV5,169 transMapRnaV5,227 transMapRnaV5,260 transMapRnaV5,268 transMapRnaV5,285 transMapRnaV5,299 transMapRnaV5,311 transMapRnaV5,350 transMapRnaV5,395 transMapRnaV5,405 transMapRnaV5,438 transMapRnaV5,444 transMapRnaV5,457 transMapRnaV5,617 transMapRnaV5,659 transMapRnaV5,738 transMapV5,79 transMapV5,89 transMapV5,120 transMapV5,131 transMapV5,154 transMapV5,186 transMapV5,196 transMapV5,252 transMapV5,275 transMapV5,333 transMapV5,366 transMapV5,374 transMapV5,391 transMapV5,405 transMapV5,417 transMapV5,456 transMapV5,501 transMapV5,511 transMapV5,544 transMapV5,550 transMapV5,563 transMapV5,723 transMapV5,765 transMapV5,844 ucscToINSDC,22 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 toga HLTOGAannotvHg38v1,1 HLTOGAannotvHg38v1,4 HLTOGAannotvHg38v1,16 HLTOGAannotvHg38v1,44 HLTOGAannotvHg38v1,72 HLTOGAannotvHg38v1,326 HLTOGAannotvHg38v1,333 together chainHg19,123 chainMm39,123 chainNetHg19,125 chainNetMm39,126 netHg19,123 netMm39,123 tolerate chainHg19,92 chainMm39,92 chainNetHg19,94 chainNetMm39,95 netHg19,92 netMm39,92 tolerated uniprot,1257 too refSeqComposite,932 tool HLTOGAannotvHg38v1,17 mrna,520 refSeqComposite,1504 refSeqComposite,1733 transMapEnsemblV5,612 transMapEnsemblV5,643 transMapEstV5,581 transMapEstV5,612 transMapRefSeqV5,581 transMapRefSeqV5,612 transMapRnaV5,581 transMapRnaV5,612 transMapV5,687 transMapV5,718 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainHg19,508 chainMm39,508 chainNetHg19,510 chainNetMm39,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netHg19,508 netMm39,508 refSeqComposite,733 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,93 top-level chainHg19,383 chainHg19,403 chainMm39,383 chainMm39,403 chainNetHg19,385 chainNetHg19,405 chainNetMm39,386 chainNetMm39,406 netHg19,383 netHg19,403 netMm39,383 netMm39,403 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainHg19,14 chainHg19,58 chainHg19,61 chainHg19,119 chainHg19,259 chainHg19,262 chainHg19,310 chainHg19,345 chainHg19,377 chainHg19,564 chainHg19,691 chainHg19,754 chainMm39,14 chainMm39,58 chainMm39,61 chainMm39,119 chainMm39,259 chainMm39,262 chainMm39,310 chainMm39,345 chainMm39,377 chainMm39,564 chainMm39,691 chainMm39,754 chainNetHg19,16 chainNetHg19,60 chainNetHg19,63 chainNetHg19,121 chainNetHg19,261 chainNetHg19,264 chainNetHg19,312 chainNetHg19,347 chainNetHg19,379 chainNetHg19,566 chainNetHg19,693 chainNetHg19,756 chainNetMm39,17 chainNetMm39,61 chainNetMm39,64 chainNetMm39,122 chainNetMm39,262 chainNetMm39,265 chainNetMm39,313 chainNetMm39,348 chainNetMm39,380 chainNetMm39,567 chainNetMm39,694 chainNetMm39,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netHg19,14 netHg19,58 netHg19,61 netHg19,119 netHg19,259 netHg19,262 netHg19,310 netHg19,345 netHg19,377 netHg19,564 netHg19,691 netHg19,754 netMm39,14 netMm39,58 netMm39,61 netMm39,119 netMm39,259 netMm39,262 netMm39,310 netMm39,345 netMm39,377 netMm39,564 netMm39,691 netMm39,754 refSeqComposite,17 refSeqComposite,45 refSeqComposite,145 refSeqComposite,149 refSeqComposite,311 refSeqComposite,315 refSeqComposite,328 refSeqComposite,335 refSeqComposite,470 refSeqComposite,498 refSeqComposite,508 refSeqComposite,562 refSeqComposite,723 refSeqComposite,736 refSeqComposite,754 refSeqComposite,813 refSeqComposite,842 refSeqComposite,867 refSeqComposite,1197 refSeqComposite,1212 refSeqComposite,1336 refSeqComposite,1708 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,231 transMapEnsemblV5,569 transMapEnsemblV5,573 transMapEnsemblV5,675 transMapEstV5,14 transMapEstV5,65 transMapEstV5,75 transMapEstV5,200 transMapEstV5,538 transMapEstV5,542 transMapEstV5,644 transMapRefSeqV5,15 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,200 transMapRefSeqV5,538 transMapRefSeqV5,542 transMapRefSeqV5,644 transMapRnaV5,15 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,200 transMapRnaV5,538 transMapRnaV5,542 transMapRnaV5,644 transMapV5,101 transMapV5,171 transMapV5,181 transMapV5,306 transMapV5,644 transMapV5,648 transMapV5,750 ucscToINSDC,15 ucscToINSDC,47 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainHg19,768 chainMm39,768 chainNetHg19,770 chainNetMm39,771 genscan,56 genscan,74 mrna,37 mrna,360 netHg19,768 netMm39,768 refSeqComposite,99 refSeqComposite,135 refSeqComposite,169 refSeqComposite,404 refSeqComposite,454 refSeqComposite,593 refSeqComposite,601 refSeqComposite,1137 refSeqComposite,1147 refSeqComposite,1223 refSeqComposite,1292 refSeqComposite,1371 refSeqComposite,1472 refSeqComposite,1579 refSeqComposite,1672 refSeqComposite,1697 transMapEnsemblV5,104 transMapEnsemblV5,522 transMapEnsemblV5,583 transMapEstV5,73 transMapEstV5,491 transMapEstV5,552 transMapRefSeqV5,73 transMapRefSeqV5,491 transMapRefSeqV5,552 transMapRnaV5,73 transMapRnaV5,491 transMapRnaV5,552 transMapV5,13 transMapV5,179 transMapV5,597 transMapV5,658 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,54 traditional chainHg19,84 chainMm39,84 chainNetHg19,86 chainNetMm39,87 netHg19,84 netMm39,84 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed refSeqComposite,430 transcript HLTOGAannotvHg38v1,118 HLTOGAannotvHg38v1,134 HLTOGAannotvHg38v1,258 HLTOGAannotvHg38v1,286 HLTOGAannotvHg38v1,297 refSeqComposite,532 refSeqComposite,882 refSeqComposite,910 refSeqComposite,918 refSeqComposite,989 refSeqComposite,1032 refSeqComposite,1053 refSeqComposite,1118 refSeqComposite,1128 transMapEnsemblV5,153 transMapEnsemblV5,324 transMapEnsemblV5,377 transMapEstV5,122 transMapEstV5,293 transMapEstV5,346 transMapRefSeqV5,122 transMapRefSeqV5,293 transMapRefSeqV5,346 transMapRnaV5,122 transMapRnaV5,293 transMapRnaV5,346 transMapV5,228 transMapV5,399 transMapV5,452 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 transcriptional genscan,28 transcripts HLTOGAannotvHg38v1,159 HLTOGAannotvHg38v1,188 HLTOGAannotvHg38v1,262 augustusGene,124 ncbiRefSeqGenomicDiff,7 refSeqComposite,255 refSeqComposite,322 refSeqComposite,469 refSeqComposite,520 refSeqComposite,553 refSeqComposite,1804 transMapEnsemblV5,341 transMapEstV5,310 transMapRefSeqV5,310 transMapRnaV5,310 transMapV5,416 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,376 translated transMapV5,155 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,440 transMapEnsemblV5,499 transMapEnsemblV5,588 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,663 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,409 transMapEstV5,468 transMapEstV5,557 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,632 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,409 transMapRefSeqV5,468 transMapRefSeqV5,557 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,632 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,409 transMapRnaV5,468 transMapRnaV5,557 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,632 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,70 transMapV5,100 transMapV5,157 transMapV5,515 transMapV5,574 transMapV5,663 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,738 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainHg19,565 chainHg19,589 chainHg19,898 chainMm39,565 chainMm39,589 chainMm39,898 chainNetHg19,567 chainNetHg19,591 chainNetHg19,900 chainNetMm39,568 chainNetMm39,592 chainNetMm39,901 netHg19,565 netHg19,589 netHg19,898 netMm39,565 netMm39,589 netMm39,898 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainHg19,796 chainMm39,796 chainNetHg19,798 chainNetMm39,799 netHg19,796 netMm39,796 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainHg19,332 chainMm39,332 chainNetHg19,334 chainNetMm39,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netHg19,332 netMm39,332 refSeqComposite,805 xenoRefGene,131 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainHg19,904 chainMm39,904 chainNetHg19,906 chainNetMm39,907 netHg19,904 netMm39,904 transMapEnsemblV5,452 transMapEnsemblV5,489 transMapEstV5,421 transMapEstV5,458 transMapRefSeqV5,421 transMapRefSeqV5,458 transMapRnaV5,421 transMapRnaV5,458 transMapV5,527 transMapV5,564 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type gold,145 mrna,112 mrna,142 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainHg19,504 chainMm39,504 chainNetHg19,506 chainNetMm39,507 gap,121 gold,136 mrna,191 mrna,363 netHg19,504 netMm39,504 refSeqComposite,871 refSeqComposite,886 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,429 typically HLTOGAannotvHg38v1,273 cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 gc5BaseBw,33 u chainHg19,1067 chainMm39,1067 chainNetHg19,1069 chainNetMm39,1070 netHg19,1067 netMm39,1067 ucsc mrna,444 nestedRepeats,245 refSeqComposite,43 refSeqComposite,47 refSeqComposite,70 refSeqComposite,192 refSeqComposite,333 refSeqComposite,477 refSeqComposite,483 refSeqComposite,591 refSeqComposite,1151 refSeqComposite,1201 refSeqComposite,1209 refSeqComposite,1413 refSeqComposite,1598 refSeqComposite,1712 transMapEnsemblV5,35 transMapEnsemblV5,162 transMapEnsemblV5,183 transMapEnsemblV5,682 transMapEstV5,33 transMapEstV5,131 transMapEstV5,152 transMapEstV5,651 transMapRefSeqV5,33 transMapRefSeqV5,131 transMapRefSeqV5,152 transMapRefSeqV5,651 transMapRnaV5,33 transMapRnaV5,131 transMapRnaV5,152 transMapRnaV5,651 transMapV5,32 transMapV5,237 transMapV5,258 transMapV5,757 ucscToINSDC,17 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,283 unambiguously refSeqComposite,1108 uncertain HLTOGAannotvHg38v1,235 uncheck refSeqComposite,163 undergone refSeqComposite,614 xenoRefGene,67 underlies genscan,142 underlying uniprot,1682 xenoRefGene,35 underneath chainHg19,832 chainMm39,832 chainNetHg19,834 chainNetMm39,835 netHg19,832 netMm39,832 unexpected uniprot,766 ungapped chainHg19,443 chainMm39,443 chainNetHg19,445 chainNetMm39,446 netHg19,443 netMm39,443 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,383 transMapEnsemblV5,394 transMapEnsemblV5,431 transMapEnsemblV5,442 transMapEstV5,352 transMapEstV5,363 transMapEstV5,400 transMapEstV5,411 transMapRefSeqV5,352 transMapRefSeqV5,363 transMapRefSeqV5,400 transMapRefSeqV5,411 transMapRnaV5,352 transMapRnaV5,363 transMapRnaV5,400 transMapRnaV5,411 transMapV5,458 transMapV5,469 transMapV5,506 transMapV5,517 uniprot,1600 universal uniprot,1993 university chainHg19,918 chainHg19,952 chainHg19,998 chainHg19,1021 chainMm39,918 chainMm39,952 chainMm39,998 chainMm39,1021 chainNetHg19,920 chainNetHg19,954 chainNetHg19,1000 chainNetHg19,1023 chainNetMm39,921 chainNetMm39,955 chainNetMm39,1001 chainNetMm39,1024 netHg19,918 netHg19,952 netHg19,998 netHg19,1021 netMm39,918 netMm39,952 netMm39,998 netMm39,1021 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unlikely HLTOGAannotvHg38v1,288 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainHg19,226 chainMm39,226 chainNetHg19,228 chainNetMm39,229 netHg19,226 netMm39,226 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainHg19,184 chainMm39,184 chainNetHg19,186 chainNetMm39,187 netHg19,184 netMm39,184 unsure rmsk,263 untranscribed refSeqComposite,407 up gold,76 refSeqComposite,1439 refSeqComposite,1633 rmsk,146 update mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1769 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated uniprot,1566 xenoRefGene,39 us uniprot,687 uniprot,1441 use gold,87 mrna,109 refSeqComposite,35 refSeqComposite,1541 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used HLTOGAannotvHg38v1,105 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainHg19,293 chainHg19,665 chainHg19,696 chainHg19,787 chainHg19,839 chainHg19,872 chainMm39,293 chainMm39,665 chainMm39,696 chainMm39,787 chainMm39,839 chainMm39,872 chainNetHg19,295 chainNetHg19,667 chainNetHg19,698 chainNetHg19,789 chainNetHg19,841 chainNetHg19,874 chainNetMm39,296 chainNetMm39,668 chainNetMm39,699 chainNetMm39,790 chainNetMm39,842 chainNetMm39,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 genscan,159 gold,14 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netHg19,293 netHg19,665 netHg19,696 netHg19,787 netHg19,839 netHg19,872 netMm39,293 netMm39,665 netMm39,696 netMm39,787 netMm39,839 netMm39,872 refSeqComposite,233 refSeqComposite,243 refSeqComposite,996 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,186 transMapEnsemblV5,238 transMapEnsemblV5,243 transMapEnsemblV5,263 transMapEnsemblV5,283 transMapEnsemblV5,315 transMapEnsemblV5,647 transMapEstV5,155 transMapEstV5,207 transMapEstV5,212 transMapEstV5,232 transMapEstV5,252 transMapEstV5,284 transMapEstV5,616 transMapRefSeqV5,155 transMapRefSeqV5,207 transMapRefSeqV5,212 transMapRefSeqV5,232 transMapRefSeqV5,252 transMapRefSeqV5,284 transMapRefSeqV5,616 transMapRnaV5,155 transMapRnaV5,207 transMapRnaV5,212 transMapRnaV5,232 transMapRnaV5,252 transMapRnaV5,284 transMapRnaV5,616 transMapV5,69 transMapV5,261 transMapV5,313 transMapV5,318 transMapV5,338 transMapV5,358 transMapV5,390 transMapV5,722 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainHg19,278 chainHg19,477 chainMm39,278 chainMm39,477 chainNetHg19,280 chainNetHg19,479 chainNetMm39,281 chainNetMm39,480 microsat,20 netHg19,278 netHg19,477 netMm39,278 netMm39,477 user mrna,336 transMapEnsemblV5,120 transMapEstV5,89 transMapRefSeqV5,89 transMapRnaV5,89 transMapV5,195 users refSeqComposite,822 uniprot,406 uniprot,684 xenoRefGene,148 uses HLTOGAannotvHg38v1,45 HLTOGAannotvHg38v1,87 rmsk,79 using HLTOGAannotvHg38v1,6 augustusGene,294 chainHg19,74 chainHg19,602 chainHg19,761 chainMm39,74 chainMm39,602 chainMm39,761 chainNetHg19,76 chainNetHg19,604 chainNetHg19,763 chainNetMm39,77 chainNetMm39,605 chainNetMm39,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netHg19,74 netHg19,602 netHg19,761 netMm39,74 netMm39,602 netMm39,761 refSeqComposite,78 refSeqComposite,1152 refSeqComposite,1202 refSeqComposite,1215 refSeqComposite,1232 refSeqComposite,1304 refSeqComposite,1502 refSeqComposite,1587 refSeqComposite,1618 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,561 transMapEnsemblV5,610 transMapEnsemblV5,762 transMapEstV5,44 transMapEstV5,530 transMapEstV5,579 transMapEstV5,731 transMapRefSeqV5,44 transMapRefSeqV5,530 transMapRefSeqV5,579 transMapRefSeqV5,731 transMapRnaV5,44 transMapRnaV5,530 transMapRnaV5,579 transMapRnaV5,731 transMapV5,43 transMapV5,81 transMapV5,124 transMapV5,135 transMapV5,142 transMapV5,636 transMapV5,685 transMapV5,837 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,224 ustat windowmaskerSdust,66 usually nestedRepeats,192 transMapEnsemblV5,502 transMapEstV5,471 transMapRefSeqV5,471 transMapRnaV5,471 transMapV5,577 utilities refSeqComposite,1525 refSeqComposite,1594 utility refSeqComposite,1590 refSeqComposite,1602 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,164 v HLTOGAannotvHg38v1,343 v3.1 augustusGene,7 v4 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 v5 transMapV5,2 transMapV5,739 valid mrna,157 validate refSeqComposite,825 xenoRefGene,151 validation genscan,107 value mrna,228 variant uniprot,2026 variants refSeqComposite,947 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1074 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainHg19,1025 chainMm39,1025 chainNetHg19,1027 chainNetMm39,1028 netHg19,1025 netMm39,1025 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1131 refSeqComposite,1565 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1337 refSeqComposite,1691 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,158 transMapEnsemblV5,191 transMapEstV5,29 transMapEstV5,127 transMapEstV5,160 transMapRefSeqV5,29 transMapRefSeqV5,127 transMapRefSeqV5,160 transMapRnaV5,29 transMapRnaV5,127 transMapRnaV5,160 transMapV5,28 transMapV5,113 transMapV5,233 transMapV5,266 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,326 transMapEstV5,295 transMapRefSeqV5,295 transMapRnaV5,295 transMapV5,401 uniprot,1293 view chainHg19,454 chainMm39,454 chainNetHg19,456 chainNetMm39,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 mrna,153 netHg19,454 netMm39,454 viewed gold,79 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refSeqComposite,103 vs HLTOGAannotvHg38v1,2 w chainHg19,1027 chainHg19,1047 chainHg19,1095 chainMm39,1027 chainMm39,1047 chainMm39,1095 chainNetHg19,1029 chainNetHg19,1049 chainNetHg19,1097 chainNetMm39,1030 chainNetMm39,1050 chainNetMm39,1098 gold,148 netHg19,1027 netHg19,1047 netHg19,1095 netMm39,1027 netMm39,1047 netMm39,1095 waack augustusGene,318 want uniprot,690 was HLTOGAannotvHg38v1,317 augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainHg19,646 chainHg19,664 chainHg19,785 chainHg19,830 chainHg19,838 chainHg19,858 chainHg19,870 chainHg19,895 chainHg19,913 chainHg19,948 chainMm39,646 chainMm39,664 chainMm39,785 chainMm39,830 chainMm39,838 chainMm39,858 chainMm39,870 chainMm39,895 chainMm39,913 chainMm39,948 chainNetHg19,648 chainNetHg19,666 chainNetHg19,787 chainNetHg19,832 chainNetHg19,840 chainNetHg19,860 chainNetHg19,872 chainNetHg19,897 chainNetHg19,915 chainNetHg19,950 chainNetMm39,649 chainNetMm39,667 chainNetMm39,788 chainNetMm39,833 chainNetMm39,841 chainNetMm39,861 chainNetMm39,873 chainNetMm39,898 chainNetMm39,916 chainNetMm39,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 microsat,108 mrna,411 mrna,441 netHg19,646 netHg19,664 netHg19,785 netHg19,830 netHg19,838 netHg19,858 netHg19,870 netHg19,895 netHg19,913 netHg19,948 netMm39,646 netMm39,664 netMm39,785 netMm39,830 netMm39,838 netMm39,858 netMm39,870 netMm39,895 netMm39,913 netMm39,948 refSeqComposite,499 refSeqComposite,1259 refSeqComposite,1709 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,220 transMapEnsemblV5,237 transMapEnsemblV5,282 transMapEnsemblV5,314 transMapEnsemblV5,676 transMapEstV5,189 transMapEstV5,206 transMapEstV5,251 transMapEstV5,283 transMapEstV5,645 transMapRefSeqV5,189 transMapRefSeqV5,206 transMapRefSeqV5,251 transMapRefSeqV5,283 transMapRefSeqV5,645 transMapRnaV5,189 transMapRnaV5,206 transMapRnaV5,251 transMapRnaV5,283 transMapRnaV5,645 transMapV5,295 transMapV5,312 transMapV5,357 transMapV5,389 transMapV5,751 ucscToINSDC,48 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 way transMapEnsemblV5,587 transMapEstV5,556 transMapRefSeqV5,556 transMapRnaV5,556 transMapV5,662 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1298 we refSeqComposite,76 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 weaker HLTOGAannotvHg38v1,198 webb chainHg19,927 chainHg19,964 chainMm39,927 chainMm39,964 chainNetHg19,929 chainNetHg19,966 chainNetMm39,930 chainNetMm39,967 netHg19,927 netHg19,964 netMm39,927 netMm39,964 weekly xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 genscan,36 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainHg19,575 chainHg19,583 chainHg19,590 chainHg19,597 chainHg19,609 chainHg19,682 chainHg19,756 chainHg19,936 chainHg19,980 chainHg19,994 chainMm39,575 chainMm39,583 chainMm39,590 chainMm39,597 chainMm39,609 chainMm39,682 chainMm39,756 chainMm39,936 chainMm39,980 chainMm39,994 chainNetHg19,577 chainNetHg19,585 chainNetHg19,592 chainNetHg19,599 chainNetHg19,611 chainNetHg19,684 chainNetHg19,758 chainNetHg19,938 chainNetHg19,982 chainNetHg19,996 chainNetMm39,578 chainNetMm39,586 chainNetMm39,593 chainNetMm39,600 chainNetMm39,612 chainNetMm39,685 chainNetMm39,759 chainNetMm39,939 chainNetMm39,983 chainNetMm39,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 gc5BaseBw,79 mrna,387 mrna,435 netHg19,575 netHg19,583 netHg19,590 netHg19,597 netHg19,609 netHg19,682 netHg19,756 netHg19,936 netHg19,980 netHg19,994 netMm39,575 netMm39,583 netMm39,590 netMm39,597 netMm39,609 netMm39,682 netMm39,756 netMm39,936 netMm39,980 netMm39,994 refSeqComposite,100 refSeqComposite,248 refSeqComposite,357 refSeqComposite,419 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1226 refSeqComposite,1242 refSeqComposite,1283 transMapEnsemblV5,155 transMapEnsemblV5,185 transMapEnsemblV5,211 transMapEnsemblV5,242 transMapEnsemblV5,248 transMapEnsemblV5,262 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,392 transMapEstV5,124 transMapEstV5,154 transMapEstV5,180 transMapEstV5,211 transMapEstV5,217 transMapEstV5,231 transMapEstV5,317 transMapEstV5,348 transMapEstV5,361 transMapRefSeqV5,124 transMapRefSeqV5,154 transMapRefSeqV5,180 transMapRefSeqV5,211 transMapRefSeqV5,217 transMapRefSeqV5,231 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,361 transMapRnaV5,124 transMapRnaV5,154 transMapRnaV5,180 transMapRnaV5,211 transMapRnaV5,217 transMapRnaV5,231 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,361 transMapV5,115 transMapV5,128 transMapV5,230 transMapV5,260 transMapV5,286 transMapV5,317 transMapV5,323 transMapV5,337 transMapV5,423 transMapV5,454 transMapV5,467 ucscToINSDC,35 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wget uniprot,1903 uniprot,1913 wheeler mrna,496 when augustusGene,188 augustusGene,238 chainHg19,405 chainMm39,405 chainNetHg19,407 chainNetMm39,408 mrna,89 mrna,99 mrna,396 netHg19,405 netMm39,405 refSeqComposite,1088 refSeqComposite,1244 transMapEnsemblV5,465 transMapEstV5,434 transMapRefSeqV5,434 transMapRnaV5,434 transMapV5,540 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,236 where chainHg19,191 chainMm39,191 chainNetHg19,193 chainNetMm39,194 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netHg19,191 netMm39,191 transMapEnsemblV5,270 transMapEnsemblV5,371 transMapEnsemblV5,420 transMapEnsemblV5,508 transMapEstV5,239 transMapEstV5,340 transMapEstV5,389 transMapEstV5,477 transMapRefSeqV5,239 transMapRefSeqV5,340 transMapRefSeqV5,389 transMapRefSeqV5,477 transMapRnaV5,239 transMapRnaV5,340 transMapRnaV5,389 transMapRnaV5,477 transMapV5,345 transMapV5,446 transMapV5,495 transMapV5,583 uniprot,1192 whether chainHg19,854 chainMm39,854 chainNetHg19,856 chainNetMm39,857 netHg19,854 netMm39,854 which augustusGene,159 augustusGene,227 chainHg19,322 chainHg19,613 chainHg19,819 chainMm39,322 chainMm39,613 chainMm39,819 chainNetHg19,324 chainNetHg19,615 chainNetHg19,821 chainNetMm39,325 chainNetMm39,616 chainNetMm39,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 mrna,176 nestedRepeats,31 nestedRepeats,87 netHg19,322 netHg19,613 netHg19,819 netMm39,322 netMm39,613 netMm39,819 refSeqComposite,46 refSeqComposite,261 refSeqComposite,1478 refSeqComposite,1506 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,614 transMapEstV5,583 transMapRefSeqV5,583 transMapRnaV5,583 transMapV5,144 transMapV5,689 uniprot,158 uniprot,1380 uniprot,1768 while chainHg19,214 chainMm39,214 chainNetHg19,216 chainNetMm39,217 netHg19,214 netMm39,214 white gap,104 whole HLTOGAannotvHg38v1,63 chainHg19,462 chainMm39,462 chainNetHg19,464 chainNetMm39,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,149 netHg19,462 netMm39,462 refSeqComposite,1494 transMapEnsemblV5,604 transMapEstV5,573 transMapRefSeqV5,573 transMapRnaV5,573 transMapV5,679 whose refSeqComposite,220 refSeqComposite,349 refSeqComposite,963 transMapEnsemblV5,217 transMapEstV5,186 transMapRefSeqV5,186 transMapRnaV5,186 transMapV5,292 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards mrna,214 will mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish mrna,178 refSeqComposite,172 xenoRefGene,205 with HLTOGAannotvHg38v1,359 augustusGene,127 augustusGene,322 chainHg19,42 chainHg19,205 chainHg19,216 chainHg19,585 chainHg19,697 chainHg19,773 chainHg19,897 chainHg19,929 chainHg19,961 chainHg19,1098 chainMm39,42 chainMm39,205 chainMm39,216 chainMm39,585 chainMm39,697 chainMm39,773 chainMm39,897 chainMm39,929 chainMm39,961 chainMm39,1098 chainNetHg19,44 chainNetHg19,207 chainNetHg19,218 chainNetHg19,587 chainNetHg19,699 chainNetHg19,775 chainNetHg19,899 chainNetHg19,931 chainNetHg19,963 chainNetHg19,1100 chainNetMm39,45 chainNetMm39,208 chainNetMm39,219 chainNetMm39,588 chainNetMm39,700 chainNetMm39,776 chainNetMm39,900 chainNetMm39,932 chainNetMm39,964 chainNetMm39,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 gap,52 gc5BaseBw,35 gold,51 gold,141 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netHg19,42 netHg19,205 netHg19,216 netHg19,585 netHg19,697 netHg19,773 netHg19,897 netHg19,929 netHg19,961 netHg19,1098 netMm39,42 netMm39,205 netMm39,216 netMm39,585 netMm39,697 netMm39,773 netMm39,897 netMm39,929 netMm39,961 netMm39,1098 refSeqComposite,223 refSeqComposite,352 refSeqComposite,488 refSeqComposite,950 refSeqComposite,979 refSeqComposite,1038 refSeqComposite,1065 refSeqComposite,1091 refSeqComposite,1130 refSeqComposite,1235 refSeqComposite,1279 refSeqComposite,1397 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,182 transMapEnsemblV5,250 transMapEnsemblV5,350 transMapEnsemblV5,352 transMapEnsemblV5,581 transMapEstV5,151 transMapEstV5,219 transMapEstV5,319 transMapEstV5,321 transMapEstV5,550 transMapRefSeqV5,151 transMapRefSeqV5,219 transMapRefSeqV5,319 transMapRefSeqV5,321 transMapRefSeqV5,550 transMapRnaV5,151 transMapRnaV5,219 transMapRnaV5,319 transMapRnaV5,321 transMapRnaV5,550 transMapV5,257 transMapV5,325 transMapV5,425 transMapV5,427 transMapV5,656 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within gold,116 mrna,82 mrna,420 refSeqComposite,721 refSeqComposite,1268 simpleRepeat,37 transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,82 xenoRefGene,260 without uniprot,139 wj chainHg19,1041 chainHg19,1083 chainMm39,1041 chainMm39,1083 chainNetHg19,1043 chainNetHg19,1085 chainNetMm39,1044 chainNetMm39,1086 mrna,515 netHg19,1041 netHg19,1083 netMm39,1041 netMm39,1083 refSeqComposite,1728 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide mrna,458 refSeqComposite,1718 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 wrench refSeqComposite,749 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,353 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,355 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 yap chainHg19,1024 chainMm39,1024 chainNetHg19,1026 chainNetMm39,1027 netHg19,1024 netMm39,1024 years uniprot,933 yet refSeqComposite,672 refSeqComposite,697 yip uniprot,2010 yl uniprot,2011 you mrna,177 refSeqComposite,171 refSeqComposite,1347 refSeqComposite,1455 refSeqComposite,1539 refSeqComposite,1559 refSeqComposite,1629 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,204 younger nestedRepeats,94 your refSeqComposite,1521 refSeqComposite,1634 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1783 yp refSeqComposite,228 refSeqComposite,231 refSeqComposite,241 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainHg19,1087 chainMm39,1087 chainNetHg19,1089 chainNetMm39,1090 netHg19,1087 netMm39,1087 zebrafish augustusGene,202 augustusGene,278 zhang chainHg19,925 chainHg19,1086 chainMm39,925 chainMm39,1086 chainNetHg19,927 chainNetHg19,1088 chainNetMm39,928 chainNetMm39,1089 netHg19,925 netHg19,1086 netMm39,925 netMm39,1086 zheng chainHg19,924 chainMm39,924 chainNetHg19,926 chainNetMm39,927 netHg19,924 netMm39,924 zhu transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 zinc uniprot,326 zoomed-in genscan,103