hub GCF_014441545.1 genome assembly shortLabel dog (labrador SID07034 2020) longLabel dog (labrador SID07034 2020)/Canis lupus familiaris/GCF_014441545.1_ROS_Cfam_1.0 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_014441545.1_ROS_Cfam_1.0.description.html genome GCF_014441545.1 taxId 9615 groups groups.txt description dog (labrador SID07034 2020) twoBitPath GCF_014441545.1.2bit twoBitBptUrl GCF_014441545.1.2bit.bpt chromSizes GCF_014441545.1.chrom.sizes.txt chromAliasBb GCF_014441545.1.chromAlias.bb chromAuthority ucsc organism ROS_Cfam_1.0 Sep. 2020 defaultPos NC_051843.1:42356539-42366539 scientificName Canis lupus familiaris htmlPath html/GCF_014441545.1_ROS_Cfam_1.0.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/014/441/545/GCF_014441545.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/014/441/545/GCF_014441545.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/014/441/545/GCF_014441545.1 liftOver.canFam2 liftOver/GCF_014441545.1ToCanFam2.over.chain.gz liftOver.canFam3 liftOver/GCF_014441545.1ToCanFam3.over.chain.gz liftOver.canFam4 liftOver/GCF_014441545.1ToCanFam4.over.chain.gz liftOver.hg19 liftOver/GCF_014441545.1ToHg19.over.chain.gz liftOver.hg38 liftOver/GCF_014441545.1ToHg38.over.chain.gz liftOver.mm10 liftOver/GCF_014441545.1ToMm10.over.chain.gz liftOver.rheMac10 liftOver/GCF_014441545.1ToRheMac10.over.chain.gz track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.assembly.bb type bigBed 6 html html/GCF_014441545.1_ROS_Cfam_1.0.assembly searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility dense autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.gc5Base.bw html html/GCF_014441545.1_ROS_Cfam_1.0.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCF_014441545.1_ROS_Cfam_1.0.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.rmsk.bb maxWindowToDraw 5000000 html html/GCF_014441545.1_ROS_Cfam_1.0.repeatMasker track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.simpleRepeat.bb html html/GCF_014441545.1_ROS_Cfam_1.0.simpleRepeat track refSeqComposite compositeTrack on shortLabel NCBI RefSeq longLabel RefSeq gene predictions from NCBI group genes visibility pack type bigBed dragAndDrop subTracks allButtonPair on dataVersion NCBI Canis lupus familiaris Annotation Release 106 (2021-01-11) html html/GCF_014441545.1_ROS_Cfam_1.0.refSeqComposite priority 2 track ncbiRefSeq parent refSeqComposite on color 12,12,120 shortLabel RefSeq All type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeq.ix bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeq.bb longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*) idXref ncbiRefSeqLink mrnaAcc name baseColorUseCds given baseColorDefault genomicCodons priority 1 track ncbiRefSeqCurated color 12,12,120 parent refSeqComposite on shortLabel RefSeq Curated longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqCurated.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqCurated.bb baseColorUseCds given baseColorDefault genomicCodons priority 2 track ncbiRefSeqPredicted color 12,12,120 parent refSeqComposite on shortLabel RefSeq Predicted longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*) type bigGenePred urls name2="https://www.ncbi.nlm.nih.gov/gene/?term=$$" geneName="https://www.ncbi.nlm.nih.gov/gene/$$" geneName2="https://www.ncbi.nlm.nih.gov/nuccore/$$" labelFields name,geneName,geneName2 defaultLabelFields geneName2 searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqPredicted.ix idXref ncbiRefSeqLink mrnaAcc name bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqPredicted.bb baseColorUseCds given baseColorDefault genomicCodons priority 3 track ncbiRefSeqOther color 32,32,32 parent refSeqComposite on shortLabel RefSeq Other longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) priority 4 searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqOther.ix bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.ncbiRefSeqOther.bb type bigBed 12 + labelFields name skipEmptyFields on urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$" track ncbiRefSeqPsl priority 5 parent refSeqComposite off shortLabel RefSeq Alignments longLabel RefSeq Alignments of RNAs type bigPsl searchIndex name bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.bigPsl.bb indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsMaxZoom 10000.0 showCdsAllScales . baseColorDefault diffCodons pslSequence no baseColorUseSequence lfExtra baseColorUseCds table given color 0,0,0 track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility dense type bigBed 4 + html html/GCF_014441545.1_ROS_Cfam_1.0.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.windowMasker.bb html html/GCF_014441545.1_ROS_Cfam_1.0.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility hide type bigBed 3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.allGaps.bb html html/GCF_014441545.1_ROS_Cfam_1.0.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.augustus.bb html html/GCF_014441545.1_ROS_Cfam_1.0.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.xenoRefGene.ix html html/GCF_014441545.1_ROS_Cfam_1.0.xenoRefGene track ensGene shortLabel Ensembl genes longLabel Ensembl genes 2020_10 group genes priority 40 visibility pack color 150,0,0 itemRgb on type bigGenePred bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.ensGene.bb searchTrix ixIxx/GCF_014441545.1_ROS_Cfam_1.0.ensGene.ix searchIndex name labelFields name,name2 defaultLabelFields name2 baseColorUseCds given baseColorDefault genomicCodons labelSeparator " " html html/GCF_014441545.1_ROS_Cfam_1.0.ensGene track GCF_014441545.1_ROS_Cfam_1.0ChainNet compositeTrack on shortLabel Chain/Net longLabel Chain alignments to target sequence: GCF_014441545.1_ROS_Cfam_1.0 subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment subGroup2 species Assembly s000=canFam4 s001=canFam3 s002=canFam2 s003=hg38 s004=hg19 s005=rheMac10 s006=mm10 subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align dragAndDrop subTracks visibility hide group compGeno color 0,0,0 altColor 255,255,0 type bed 3 chainLinearGap loose chainMinScore 5000 dimensions dimensionX=chainType dimensionY=species sortOrder species=+ view=+ chainType=+ configurable on html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet track GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain shortLabel Chains view chain visibility dense parent GCF_014441545.1_ROS_Cfam_1.0ChainNet spectrum on track GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen shortLabel Syntenic view synten visibility hide parent GCF_014441545.1_ROS_Cfam_1.0ChainNet spectrum on track GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest shortLabel Reciprocal best view rbest visibility hide parent GCF_014441545.1_ROS_Cfam_1.0ChainNet spectrum on track GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver shortLabel Lift over view liftover visibility hide parent GCF_014441545.1_ROS_Cfam_1.0ChainNet spectrum on track chainCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain on subGroups view=chain species=s000 chainType=c00 shortLabel Dog/canFam4 Chain longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigChain canFam4 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam4.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam4Link.bb otherDb canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track chainSynCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s000 chainType=c01 shortLabel Dog/canFam4 synChain longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigChain canFam4 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam4.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam4Link.bb otherDb canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track chainRBestCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s000 chainType=c02 shortLabel Dog/canFam4 rbChain longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigChain canFam4 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam4.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam4Link.bb otherDb canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track chainLiftOverCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver off subGroups view=liftover species=s000 chainType=c03 shortLabel Dog/canFam4 loChain longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigChain canFam4 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverCanFam4.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverCanFam4Link.bb otherDb canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track chainCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s001 chainType=c00 shortLabel Dog/canFam3 Chain longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigChain canFam3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam3.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam3Link.bb otherDb canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track chainSynCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s001 chainType=c01 shortLabel Dog/canFam3 synChain longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigChain canFam3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam3.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam3Link.bb otherDb canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track chainRBestCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s001 chainType=c02 shortLabel Dog/canFam3 rbChain longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigChain canFam3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam3.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam3Link.bb otherDb canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track chainLiftOverCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver off subGroups view=liftover species=s001 chainType=c03 shortLabel Dog/canFam3 loChain longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigChain canFam3 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverCanFam3.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverCanFam3Link.bb otherDb canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track chainCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s002 chainType=c00 shortLabel Dog/canFam2 Chain longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigChain canFam2 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam2.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainCanFam2Link.bb otherDb canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track chainSynCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s002 chainType=c01 shortLabel Dog/canFam2 synChain longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigChain canFam2 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam2.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynCanFam2Link.bb otherDb canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track chainRBestCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s002 chainType=c02 shortLabel Dog/canFam2 rbChain longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigChain canFam2 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam2.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestCanFam2Link.bb otherDb canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track chainHg38 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s003 chainType=c00 shortLabel Human/hg38 Chain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainHg38.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainHg38Link.bb otherDb hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track chainSynHg38 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s003 chainType=c01 shortLabel Human/hg38 synChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynHg38.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynHg38Link.bb otherDb hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track chainRBestHg38 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s003 chainType=c02 shortLabel Human/hg38 rbChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestHg38.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestHg38Link.bb otherDb hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track chainLiftOverHg38 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver off subGroups view=liftover species=s003 chainType=c03 shortLabel Human/hg38 loChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverHg38.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverHg38Link.bb otherDb hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track chainHg19 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s004 chainType=c00 shortLabel Human/hg19 Chain longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigChain hg19 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainHg19.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainHg19Link.bb otherDb hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track chainSynHg19 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s004 chainType=c01 shortLabel Human/hg19 synChain longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigChain hg19 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynHg19.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynHg19Link.bb otherDb hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track chainRBestHg19 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s004 chainType=c02 shortLabel Human/hg19 rbChain longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigChain hg19 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestHg19.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestHg19Link.bb otherDb hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track chainRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s005 chainType=c00 shortLabel Rhesus/rheMac10 Chain longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigChain rheMac10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRheMac10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRheMac10Link.bb otherDb rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track chainSynRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s005 chainType=c01 shortLabel Rhesus/rheMac10 synChain longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigChain rheMac10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynRheMac10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynRheMac10Link.bb otherDb rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track chainRBestRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s005 chainType=c02 shortLabel Rhesus/rheMac10 rbChain longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigChain rheMac10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestRheMac10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestRheMac10Link.bb otherDb rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track chainLiftOverRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver off subGroups view=liftover species=s005 chainType=c03 shortLabel Rhesus/rheMac10 loChain longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigChain rheMac10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverRheMac10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverRheMac10Link.bb otherDb rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track chainMm10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewchain off subGroups view=chain species=s006 chainType=c00 shortLabel Mouse/mm10 Chain longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigChain mm10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainMm10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainMm10Link.bb otherDb mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track chainSynMm10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewSynTen off subGroups view=synten species=s006 chainType=c01 shortLabel Mouse/mm10 synChain longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigChain mm10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynMm10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainSynMm10Link.bb otherDb mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track chainRBestMm10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewRBest off subGroups view=rbest species=s006 chainType=c02 shortLabel Mouse/mm10 rbChain longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigChain mm10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestMm10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainRBestMm10Link.bb otherDb mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track chainLiftOverMm10 parent GCF_014441545.1_ROS_Cfam_1.0ChainNetViewLiftOver off subGroups view=liftover species=s006 chainType=c03 shortLabel Mouse/mm10 loChain longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigChain mm10 bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverMm10.bb linkDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.chainLiftOverMm10Link.bb otherDb mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet shortLabel Nets view align visibility hide parent GCF_014441545.1_ROS_Cfam_1.0ChainNet track netCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s000 chainType=c04 shortLabel Dog/canFam4 mafNet longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.net.summary.bb speciesOrder canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track synNetCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s000 chainType=c05 shortLabel Dog/canFam4 synNet longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.synNet.summary.bb speciesOrder canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track rbestNetCanFam4 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s000 chainType=c06 shortLabel Dog/canFam4 rbestNet longLabel Dog/canFam4/canFam4 (Mar. 2020) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam4.rbestNet.summary.bb speciesOrder canFam4 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.385 track netCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s001 chainType=c04 shortLabel Dog/canFam3 mafNet longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.net.summary.bb speciesOrder canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track synNetCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s001 chainType=c05 shortLabel Dog/canFam3 synNet longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.synNet.summary.bb speciesOrder canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track rbestNetCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s001 chainType=c06 shortLabel Dog/canFam3 rbestNet longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.rbestNet.summary.bb speciesOrder canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track liftOverNetCanFam3 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s001 chainType=c07 shortLabel Dog/canFam3 liftOverNet longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.liftOverNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam3.liftOverNet.summary.bb speciesOrder canFam3 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.859 track netCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s002 chainType=c04 shortLabel Dog/canFam2 mafNet longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.net.summary.bb speciesOrder canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track synNetCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s002 chainType=c05 shortLabel Dog/canFam2 synNet longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.synNet.summary.bb speciesOrder canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track rbestNetCanFam2 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s002 chainType=c06 shortLabel Dog/canFam2 rbestNet longLabel Dog/canFam2/canFam2 (May 2005) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.canFam2.rbestNet.summary.bb speciesOrder canFam2 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 1.937 track netHg38 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s003 chainType=c04 shortLabel Human/hg38 mafNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.net.summary.bb speciesOrder hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track synNetHg38 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s003 chainType=c05 shortLabel Human/hg38 synNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.synNet.summary.bb speciesOrder hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track rbestNetHg38 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s003 chainType=c06 shortLabel Human/hg38 rbestNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg38.rbestNet.summary.bb speciesOrder hg38 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.484 track netHg19 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s004 chainType=c04 shortLabel Human/hg19 mafNet longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.net.summary.bb speciesOrder hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track synNetHg19 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s004 chainType=c05 shortLabel Human/hg19 synNet longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.synNet.summary.bb speciesOrder hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track rbestNetHg19 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s004 chainType=c06 shortLabel Human/hg19 rbestNet longLabel Human/hg19/hg19 (Feb. 2009) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.hg19.rbestNet.summary.bb speciesOrder hg19 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.560 track netRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s005 chainType=c04 shortLabel Rhesus/rheMac10 mafNet longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.net.summary.bb speciesOrder rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track synNetRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s005 chainType=c05 shortLabel Rhesus/rheMac10 synNet longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.synNet.summary.bb speciesOrder rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track rbestNetRheMac10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s005 chainType=c06 shortLabel Rhesus/rheMac10 rbestNet longLabel Rhesus/rheMac10/rheMac10 (Feb. 2019) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.rheMac10.rbestNet.summary.bb speciesOrder rheMac10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 38.996 track netMm10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s006 chainType=c04 shortLabel Mouse/mm10 mafNet longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.net.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.net.summary.bb speciesOrder mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track synNetMm10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s006 chainType=c05 shortLabel Mouse/mm10 synNet longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.synNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.synNet.summary.bb speciesOrder mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track rbestNetMm10 parent GCF_014441545.1_ROS_Cfam_1.0MafNetViewnet off subGroups view=align species=s006 chainType=c06 shortLabel Mouse/mm10 rbestNet longLabel Mouse/mm10/mm10 (Dec. 2011) Chained Alignments type bigMaf bigDataUrl bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.rbestNet.bb summary bbi/GCF_014441545.1_ROS_Cfam_1.0.mm10.rbestNet.summary.bb speciesOrder mm10 html html/GCF_014441545.1_ROS_Cfam_1.0.chainNet priority 68.090 track Tiberius bigDataUrl contrib/tiberius/tiberius.bigGenePred.bb shortLabel Tiberius genes longLabel Tiberius ab initio gene prediction type bigGenePred visibility pack color 0,102,204 noScoreFilter on type bigGenePred html contrib/tiberius/Tiberius.html group genes dataVersion Tiberius version 2025-01-07 baseColorDefault genomicCodons