hub GCF_009762305.2 genome assembly
shortLabel California sea lion (v2 primary hap 2020)
longLabel California sea lion (v2 primary hap 2020)/Zalophus californianus/GCF_009762305.2_mZalCal1.pri.v2 genome assembly
useOneFile on
email hclawson@ucsc.edu
descriptionUrl html/GCF_009762305.2_mZalCal1.pri.v2.description.html

genome GCF_009762305.2
taxId 9704
groups groups.txt
description California sea lion (v2 primary hap 2020)
twoBitPath GCF_009762305.2.2bit
twoBitBptUrl GCF_009762305.2.2bit.bpt
chromSizes GCF_009762305.2.chrom.sizes.txt
chromAliasBb GCF_009762305.2.chromAlias.bb
chromAuthority ucsc
organism mZalCal1.pri.v2 Jul. 2020
defaultPos NC_045595.1:72040462-72050462
scientificName Zalophus californianus
htmlPath html/GCF_009762305.2_mZalCal1.pri.v2.description.html
blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/009/762/305/GCF_009762305.2
transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/009/762/305/GCF_009762305.2
isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/009/762/305/GCF_009762305.2
liftOver.canFam3 liftOver/GCF_009762305.2ToCanFam3.over.chain.gz
liftOver.hg38 liftOver/GCF_009762305.2ToHg38.over.chain.gz

track assembly
longLabel Assembly
shortLabel Assembly
visibility hide
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.assembly.bb
type bigBed 6
html html/GCF_009762305.2_mZalCal1.pri.v2.assembly
searchIndex name
searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility dense
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.gc5Base.bw
html html/GCF_009762305.2_mZalCal1.pri.v2.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCF_009762305.2_mZalCal1.pri.v2.tanDups

    track gapOverlap
    parent tanDups on
    shortLabel Gap Overlaps
    longLabel Paired exactly identical sequence on each side of a gap
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.gapOverlap.bb
    type bigBed 12

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.tandemDups.bb
    type bigBed 12

track repeatMasker
compositeTrack on
shortLabel RepeatMasker
longLabel Repeating Elements by RepeatMasker
group varRep
visibility dense
type bigBed 6 +
colorByStrand 50,50,150 150,50,50
maxWindowToDraw 10000000
spectrum on
html html/GCF_009762305.2_mZalCal1.pri.v2.repeatMasker

    track repeatMaskerSINE
    parent repeatMasker
    shortLabel SINE
    longLabel SINE Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 1
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.SINE.bb

    track repeatMaskerLINE
    parent repeatMasker
    shortLabel LINE
    longLabel LINE Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 2
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.LINE.bb

    track repeatMaskerLTR
    parent repeatMasker
    shortLabel LTR
    longLabel LTR Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 3
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.LTR.bb

    track repeatMaskerDNA
    parent repeatMasker
    shortLabel DNA
    longLabel DNA Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 4
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.DNA.bb

    track repeatMaskerSimple
    parent repeatMasker
    shortLabel Simple
    longLabel Simple Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 5
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.Simple.bb

    track repeatMaskerLowComplexity
    parent repeatMasker
    shortLabel Low Complexity
    longLabel Low Complexity Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 6
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.Low_complexity.bb

    track repeatMaskerSatellite
    parent repeatMasker
    shortLabel Satellite
    longLabel Satellite Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 7
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.Satellite.bb

    track repeatMaskerRNA
    parent repeatMasker
    shortLabel RNA
    longLabel RNA Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 8
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.RNA.bb

    track repeatMaskerOther
    parent repeatMasker
    shortLabel Other
    longLabel Other Repeating Elements by RepeatMasker
    type bigBed 6 +
    priority 9
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rmsk.Other.bb

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility hide
group varRep
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rModel.bb
xrefDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.rModel.align.bb
maxWindowToDraw 5000000
html html/GCF_009762305.2_mZalCal1.pri.v2.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.simpleRepeat.bb
html html/GCF_009762305.2_mZalCal1.pri.v2.simpleRepeat

track refSeqComposite
compositeTrack on
shortLabel NCBI RefSeq
longLabel RefSeq gene predictions from NCBI
group genes
visibility pack
type bigBed
dragAndDrop subTracks
allButtonPair on
dataVersion NCBI Zalophus californianus Annotation Release 101 (2020-08-06)
html html/GCF_009762305.2_mZalCal1.pri.v2.refSeqComposite
priority 2

        track ncbiRefSeq
        parent refSeqComposite on
        color 12,12,120
        shortLabel RefSeq All
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeq.ix
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeq.bb
        longLabel NCBI RefSeq genes, curated and predicted sets (NM_*, XM_*, NR_*, XR_*, NP_* or YP_*)
        idXref ncbiRefSeqLink mrnaAcc name
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 1

        track ncbiRefSeqCurated
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Curated
        longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqCurated.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqCurated.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 2

        track ncbiRefSeqPredicted
        color 12,12,120
        parent refSeqComposite on
        shortLabel RefSeq Predicted
        longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)
        type bigGenePred
        urls geneName="https://www.ncbi.nlm.nih.gov/nuccore/$$?report=genbank" geneName2="https://www.ncbi.nlm.nih.gov/datasets/gene/$D/?search=$$"
        labelFields name,geneName,geneName2
        defaultLabelFields geneName2
        searchIndex name
        searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqPredicted.ix
        idXref ncbiRefSeqLink mrnaAcc name
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqPredicted.bb
        baseColorUseCds given
        baseColorDefault genomicCodons
        priority 3

        track ncbiRefSeqOther
        color 32,32,32
        parent refSeqComposite on
        shortLabel RefSeq Other
        longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)
        priority 4
        searchIndex name
        searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqOther.ix
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.ncbiRefSeqOther.bb
        type bigBed 12 +
        labelFields name
        skipEmptyFields on
        urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/$$" HGNC="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" FlyBase="http://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="http://www.informatics.jax.org/marker/$$"

        track ncbiRefSeqPsl
        priority 5
        parent refSeqComposite off
        shortLabel RefSeq Alignments
        longLabel RefSeq Alignments of RNAs
        type bigPsl
        searchIndex name
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.bigPsl.bb
        indelDoubleInsert on
        indelQueryInsert on
        showDiffBasesAllScales .
        showDiffBasesMaxZoom 10000.0
        showCdsMaxZoom 10000.0
        showCdsAllScales .
        baseColorDefault diffCodons
        pslSequence no
        baseColorUseSequence lfExtra
        baseColorUseCds table given
        color 0,0,0

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility dense
type bigBed 4 +
html html/GCF_009762305.2_mZalCal1.pri.v2.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.windowMasker.bb
html html/GCF_009762305.2_mZalCal1.pri.v2.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility hide
type bigBed 3
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.allGaps.bb
html html/GCF_009762305.2_mZalCal1.pri.v2.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility dense
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.augustus.bb
html html/GCF_009762305.2_mZalCal1.pri.v2.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.xenoRefGene.ix
html html/GCF_009762305.2_mZalCal1.pri.v2.xenoRefGene

track ensGene
shortLabel Ensembl genes
longLabel Ensembl genes 2020_08
group genes
priority 40
visibility pack
color 150,0,0
itemRgb on
type bigGenePred
bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.ensGene.bb
searchTrix ixIxx/GCF_009762305.2_mZalCal1.pri.v2.ensGene.ix
searchIndex name
labelFields name,name2
defaultLabelFields name2
baseColorUseCds given
baseColorDefault genomicCodons
labelSeparator " "
html html/GCF_009762305.2_mZalCal1.pri.v2.ensGene

track GCF_009762305.2_mZalCal1.pri.v2ChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCF_009762305.2_mZalCal1.pri.v2
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=canFam3 s001=hg38
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet

    track GCF_009762305.2_mZalCal1.pri.v2ChainNetViewchain
    shortLabel Chains
    view chain
    visibility dense
    parent GCF_009762305.2_mZalCal1.pri.v2ChainNet
    spectrum on

    track GCF_009762305.2_mZalCal1.pri.v2ChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility hide
    parent GCF_009762305.2_mZalCal1.pri.v2ChainNet
    spectrum on

    track GCF_009762305.2_mZalCal1.pri.v2ChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility hide
    parent GCF_009762305.2_mZalCal1.pri.v2ChainNet
    spectrum on

    track GCF_009762305.2_mZalCal1.pri.v2ChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility hide
    parent GCF_009762305.2_mZalCal1.pri.v2ChainNet
    spectrum on

        track chainCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewchain on
        subGroups view=chain species=s000 chainType=c00
        shortLabel Dog/canFam3 Chain
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigChain canFam3
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainCanFam3.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainCanFam3Link.bb
        otherDb canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track chainSynCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel Dog/canFam3 synChain
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigChain canFam3
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainSynCanFam3.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainSynCanFam3Link.bb
        otherDb canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track chainRBestCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel Dog/canFam3 rbChain
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigChain canFam3
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainRBestCanFam3.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainRBestCanFam3Link.bb
        otherDb canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track chainLiftOverCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel Dog/canFam3 loChain
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigChain canFam3
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainLiftOverCanFam3.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainLiftOverCanFam3Link.bb
        otherDb canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track chainHg38
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel Human/hg38 Chain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainHg38.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainHg38Link.bb
        otherDb hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

        track chainSynHg38
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel Human/hg38 synChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainSynHg38.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainSynHg38Link.bb
        otherDb hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

        track chainRBestHg38
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel Human/hg38 rbChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainRBestHg38.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

        track chainLiftOverHg38
        parent GCF_009762305.2_mZalCal1.pri.v2ChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel Human/hg38 loChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainLiftOverHg38.bb
        linkDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.chainLiftOverHg38Link.bb
        otherDb hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

    track GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet
    shortLabel Nets
    view align
    visibility hide
    parent GCF_009762305.2_mZalCal1.pri.v2ChainNet

        track netCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s000 chainType=c04
        shortLabel Dog/canFam3 mafNet
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.net.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.net.summary.bb
        speciesOrder canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track synNetCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s000 chainType=c05
        shortLabel Dog/canFam3 synNet
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.synNet.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.synNet.summary.bb
        speciesOrder canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track rbestNetCanFam3
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s000 chainType=c06
        shortLabel Dog/canFam3 rbestNet
        longLabel Dog/canFam3/canFam3 (Sep. 2011) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.rbestNet.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.canFam3.rbestNet.summary.bb
        speciesOrder canFam3
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 21.286

        track netHg38
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s001 chainType=c04
        shortLabel Human/hg38 mafNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.net.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.net.summary.bb
        speciesOrder hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

        track synNetHg38
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s001 chainType=c05
        shortLabel Human/hg38 synNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.synNet.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034

        track rbestNetHg38
        parent GCF_009762305.2_mZalCal1.pri.v2MafNetViewnet off
        subGroups view=align species=s001 chainType=c06
        shortLabel Human/hg38 rbestNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.rbestNet.bb
        summary bbi/GCF_009762305.2_mZalCal1.pri.v2.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCF_009762305.2_mZalCal1.pri.v2.chainNet
        priority 38.034