hub GCF_000767855.1 genome assembly shortLabel Bactrian camel (Alxa 2014 refseq) longLabel Bactrian camel (Alxa 2014 refseq)/Camelus bactrianus/GCF_000767855.1_Ca_bactrianus_MBC_1.0 genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.description.html genome GCF_000767855.1 taxId 9837 groups groups.txt description Bactrian camel (Alxa 2014 refseq) twoBitPath GCF_000767855.1.2bit twoBitBptUrl GCF_000767855.1.2bit.bpt chromSizes GCF_000767855.1.chrom.sizes.txt chromAliasBb GCF_000767855.1.chromAlias.bb organism Ca_bactrianus_MBC_1.0 Oct. 2014 defaultPos NW_011516269.1:15512961-15522961 scientificName Camelus bactrianus htmlPath html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/767/855/GCF_000767855.1 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/767/855/GCF_000767855.1 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCF/000/767/855/GCF_000767855.1 liftOver.GCF_002263795.3 liftOver/GCF_000767855.1ToGCF_002263795.3.over.chain.gz liftOver.hg38 liftOver/GCF_000767855.1ToHg38.over.chain.gz track assembly longLabel Assembly shortLabel Assembly visibility hide colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.assembly.bb type bigBed 6 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.assembly searchIndex name searchTrix ixIxx/GCF_000767855.1_Ca_bactrianus_MBC_1.0.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track gap longLabel AGP gap shortLabel Gap (AGP defined) visibility hide color 0,0,0 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.gap.bb type bigBed 4 group map html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.gap track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl 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track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.windowMasker.bb html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility hide type bigBed 3 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.allGaps.bb html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility dense color 180,0,0 type bigGenePred bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.augustus.bb html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl 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dimensionX=chainType dimensionY=species sortOrder species=+ view=+ chainType=+ configurable on html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet track GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewchain shortLabel Chains view chain visibility dense parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNet spectrum on track GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewSynTen shortLabel Syntenic view synten visibility hide parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNet spectrum on track GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewRBest shortLabel Reciprocal best view rbest visibility hide parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNet spectrum on track GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewLiftOver shortLabel Lift over view liftover visibility hide parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNet spectrum on track chainGCF_002263795.3 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewchain on subGroups view=chain species=s000 chainType=c00 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GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewRBest off subGroups view=rbest species=s000 chainType=c02 shortLabel cattle rbChain longLabel cattle/GCF_002263795.3_ARS-UCD2.0 (2023-07-01) Chained Alignments type bigChain GCF_002263795.3 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainRBestGCF_002263795.3.bb linkDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainRBestGCF_002263795.3Link.bb otherDb GCF_002263795.3 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 23.124 track chainLiftOverGCF_002263795.3 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewLiftOver off subGroups view=liftover species=s000 chainType=c03 shortLabel cattle loChain longLabel cattle/GCF_002263795.3_ARS-UCD2.0 (2023-07-01) Chained Alignments type bigChain GCF_002263795.3 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainLiftOverGCF_002263795.3.bb linkDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainLiftOverGCF_002263795.3Link.bb otherDb GCF_002263795.3 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 23.124 track chainHg38 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewchain off subGroups view=chain species=s001 chainType=c00 shortLabel Human/hg38 Chain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainHg38.bb linkDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainHg38Link.bb otherDb hg38 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 29.276 track chainSynHg38 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0ChainNetViewSynTen off subGroups view=synten species=s001 chainType=c01 shortLabel Human/hg38 synChain longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigChain hg38 bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainSynHg38.bb linkDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainSynHg38Link.bb otherDb hg38 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 29.276 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bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.GCF_002263795.3.synNet.summary.bb speciesOrder GCF_002263795.3 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 23.124 track rbestNetGCF_002263795.3 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0MafNetViewnet off subGroups view=align species=s000 chainType=c06 shortLabel cattle rbestNet longLabel cattle/GCF_002263795.3_ARS-UCD2.0 (2023-07-01) Chained Alignments type bigMaf bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.GCF_002263795.3.rbestNet.bb summary bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.GCF_002263795.3.rbestNet.summary.bb speciesOrder GCF_002263795.3 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 23.124 track netHg38 parent GCF_000767855.1_Ca_bactrianus_MBC_1.0MafNetViewnet off subGroups view=align species=s001 chainType=c04 shortLabel Human/hg38 mafNet longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments type bigMaf bigDataUrl bbi/GCF_000767855.1_Ca_bactrianus_MBC_1.0.hg38.net.bb summary 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hg38 html html/GCF_000767855.1_Ca_bactrianus_MBC_1.0.chainNet priority 29.276