0 nestedRepeats,237 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 est,709 intronEst,790 mrna,425 transMapEnsemblV5,226 transMapEnsemblV5,361 transMapEstV5,195 transMapEstV5,330 transMapRefSeqV5,195 transMapRefSeqV5,330 transMapRnaV5,195 transMapRnaV5,330 transMapV5,301 transMapV5,436 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 est,669 intronEst,750 transMapV5,110 1 augustusGene,310 chainFr3,391 chainFr3,522 chainFr3,714 chainFr3,1113 chainMm10,391 chainMm10,522 chainMm10,714 chainMm10,1113 chainNetFr3,394 chainNetFr3,525 chainNetFr3,717 chainNetFr3,1116 chainNetMm10,394 chainNetMm10,525 chainNetMm10,717 chainNetMm10,1116 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 ensemblGeneScaffold,139 ensemblGeneScaffold,141 est,792 gap,148 genscan,227 intronEst,876 mrna,509 netFr3,391 netFr3,522 netFr3,714 netFr3,1113 netMm10,391 netMm10,522 netMm10,714 netMm10,1113 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,387 1.0 transMapEnsemblV5,369 transMapEstV5,338 transMapRefSeqV5,338 transMapRnaV5,338 transMapV5,444 10 uniprot,1928 100 augustusGene,134 chainFr3,1081 chainMm10,1081 chainNetFr3,1084 chainNetMm10,1084 microsat,70 nestedRepeats,230 netFr3,1081 netMm10,1081 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainFr3,753 chainNetFr3,756 nestedRepeats,238 netFr3,753 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,674 transMapEstV5,643 transMapRefSeqV5,643 transMapRnaV5,643 transMapV5,749 uniprot,1824 103-7 chainFr3,1114 chainMm10,1114 chainNetFr3,1117 chainNetMm10,1117 netFr3,1114 netMm10,1114 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainFr3,710 chainFr3,717 chainMm10,710 chainMm10,717 chainNetFr3,713 chainNetFr3,720 chainNetMm10,713 chainNetMm10,720 netFr3,710 netFr3,717 netMm10,710 netMm10,717 1100 chainMm10,731 chainMm10,743 chainNetMm10,734 chainNetMm10,746 netMm10,731 netMm10,743 111 chainFr3,712 chainFr3,718 chainMm10,712 chainMm10,718 chainNetFr3,715 chainNetFr3,721 chainNetMm10,715 chainNetMm10,721 netFr3,712 netFr3,718 netMm10,712 netMm10,718 11484-9 chainFr3,1083 chainMm10,1083 chainNetFr3,1086 chainNetMm10,1086 netFr3,1083 netMm10,1083 115-26 chainFr3,1045 chainMm10,1045 chainNetFr3,1048 chainNetMm10,1048 netFr3,1045 netMm10,1045 11752248 ensGene,205 ensemblGeneScaffold,144 117900 chainFr3,734 chainFr3,746 chainNetFr3,737 chainNetFr3,749 netFr3,734 netFr3,746 118300 chainFr3,758 chainNetFr3,761 netFr3,758 11928468 chainFr3,1047 chainMm10,1047 chainNetFr3,1050 chainNetMm10,1050 netFr3,1047 netMm10,1047 11932250 est,816 intronEst,900 mrna,533 xenoRefGene,317 12 est,812 intronEst,896 mrna,529 transMapEnsemblV5,751 transMapEnsemblV5,817 transMapEstV5,720 transMapEstV5,786 transMapRefSeqV5,720 transMapRefSeqV5,786 transMapRnaV5,720 transMapRnaV5,786 transMapV5,826 transMapV5,892 xenoRefGene,313 12111 chainFr3,720 chainMm10,720 chainNetFr3,723 chainNetMm10,723 netFr3,720 netMm10,720 12529312 chainFr3,1116 chainMm10,1116 chainNetFr3,1119 chainNetMm10,1119 netFr3,1116 netMm10,1116 127 gap,159 127-163 genscan,206 13 chainFr3,1112 chainMm10,1112 chainNetFr3,1115 chainNetMm10,1115 netFr3,1112 netMm10,1112 1300 chainFr3,754 chainNetFr3,757 netFr3,754 134-41 windowmaskerSdust,112 1400 chainMm10,755 chainNetMm10,758 netMm10,755 14500911 chainFr3,1085 chainMm10,1085 chainNetFr3,1088 chainNetMm10,1088 netFr3,1085 netMm10,1085 14534192 augustusGene,340 14681350 est,798 intronEst,882 mrna,515 15 microsat,30 microsat,79 microsat,130 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 15108278 uniprot,2051 152111 chainFr3,723 chainMm10,723 chainNetFr3,726 chainNetMm10,726 netFr3,723 netMm10,723 15600 chainMm10,734 chainMm10,746 chainNetMm10,737 chainNetMm10,749 netMm10,734 netMm10,746 15608248 xenoRefGene,393 16 nestedRepeats,357 rmsk,380 16000 chainMm10,758 chainNetMm10,761 netMm10,758 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,750 transMapEstV5,719 transMapRefSeqV5,719 transMapRnaV5,719 transMapV5,825 1763-73 transMapEnsemblV5,752 transMapEstV5,721 transMapRefSeqV5,721 transMapRnaV5,721 transMapV5,827 17989246 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 18085818 transMapEnsemblV5,820 transMapEstV5,789 transMapRefSeqV5,789 transMapRnaV5,789 transMapV5,895 18218656 augustusGene,315 transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainFr3,425 chainFr3,430 chainFr3,715 chainMm10,425 chainMm10,430 chainMm10,715 chainNetFr3,428 chainNetFr3,433 chainNetFr3,718 chainNetMm10,428 chainNetMm10,433 chainNetMm10,718 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netFr3,425 netFr3,430 netFr3,715 netMm10,425 netMm10,430 netMm10,715 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainFr3,1082 chainMm10,1082 chainNetFr3,1085 chainNetMm10,1085 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 gap,163 gap,164 netFr3,1082 netMm10,1082 transMapEnsemblV5,377 transMapEstV5,346 transMapRefSeqV5,346 transMapRnaV5,346 transMapV5,452 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 chainFr3,688 chainNetFr3,691 nestedRepeats,63 nestedRepeats,355 netFr3,688 rmsk,99 rmsk,378 2002 chainFr3,1044 chainMm10,1044 chainNetFr3,1047 chainNetMm10,1047 ensGene,47 ensGene,198 ensemblGeneScaffold,92 ensemblGeneScaffold,137 est,810 intronEst,894 mrna,527 netFr3,1044 netMm10,1044 xenoRefGene,311 2003 augustusGene,333 chainFr3,1078 chainFr3,1110 chainMm10,1078 chainMm10,1110 chainNetFr3,1081 chainNetFr3,1113 chainNetMm10,1081 chainNetMm10,1113 netFr3,1078 netFr3,1110 netMm10,1078 netMm10,1110 2004 est,790 intronEst,874 mrna,507 uniprot,2045 2005 xenoRefGene,385 2006 windowmaskerSdust,107 2007 chainFr3,1017 chainMm10,1017 chainNetFr3,1020 chainNetMm10,1020 netFr3,1017 netMm10,1017 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 2008 augustusGene,308 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 2010 gap,16 gold,18 2011 chainFr3,5 chainFr3,67 chainFr3,307 chainMm10,5 chainMm10,67 chainMm10,307 chainNetFr3,6 chainNetFr3,70 chainNetFr3,310 chainNetFr3Viewchain,4 chainNetFr3Viewnet,4 chainNetMm10,6 chainNetMm10,70 chainNetMm10,310 chainNetMm10Viewchain,4 chainNetMm10Viewnet,4 netFr3,5 netFr3,67 netFr3,307 netMm10,5 netMm10,67 netMm10,307 2012 uniprot,2000 2013 est,765 intronEst,849 mrna,482 2014 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 2111 chainFr3,719 chainMm10,719 chainNetFr3,722 chainNetMm10,722 netFr3,719 netMm10,719 217900 chainFr3,735 chainFr3,747 chainNetFr3,738 chainNetFr3,750 netFr3,735 netFr3,747 218300 chainFr3,759 chainNetFr3,762 netFr3,759 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 22900 chainFr3,732 chainFr3,744 chainNetFr3,735 chainNetFr3,747 netFr3,732 netFr3,744 23 uniprot,2047 23193287 est,772 intronEst,856 mrna,489 23300 chainFr3,756 chainNetFr3,759 netFr3,756 24 augustusGene,311 transMapEnsemblV5,782 transMapEstV5,751 transMapRefSeqV5,751 transMapRnaV5,751 transMapV5,857 24259432 xenoRefGene,359 25 genscan,225 transMapV5,113 xenoRefGene,271 252111 chainFr3,724 chainMm10,724 chainNetFr3,727 chainNetMm10,727 netFr3,724 netMm10,724 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2900 chainFr3,731 chainFr3,743 chainNetFr3,734 chainNetFr3,746 netFr3,731 netFr3,743 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainFr3,437 chainFr3,716 chainMm10,437 chainMm10,716 chainNetFr3,440 chainNetFr3,719 chainNetMm10,440 chainNetMm10,719 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 est,481 est,534 est,588 intronEst,114 intronEst,562 intronEst,615 intronEst,669 microsat,68 netFr3,437 netFr3,716 netMm10,437 netMm10,716 transMapEnsemblV5,816 transMapEstV5,785 transMapRefSeqV5,785 transMapRnaV5,785 transMapV5,891 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainFr3,1080 chainMm10,1080 chainNetFr3,1083 chainNetMm10,1083 ensGene,201 ensemblGeneScaffold,140 netFr3,1080 netMm10,1080 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 31600 chainMm10,735 chainMm10,747 chainNetMm10,738 chainNetMm10,750 netMm10,735 netMm10,747 317900 chainFr3,736 chainFr3,748 chainNetFr3,739 chainNetFr3,751 netFr3,736 netFr3,748 318300 chainFr3,760 chainNetFr3,763 netFr3,760 32 est,793 intronEst,84 intronEst,877 mrna,510 32000 chainMm10,759 chainNetMm10,762 netMm10,759 32111 chainFr3,721 chainMm10,721 chainNetFr3,724 chainNetMm10,724 netFr3,721 netMm10,721 325 chainMm10,726 chainMm10,738 chainNetMm10,729 chainNetMm10,741 netMm10,726 netMm10,738 33 xenoRefGene,388 3300 chainFr3,755 chainNetFr3,758 netFr3,755 350 chainFr3,726 chainFr3,738 chainNetFr3,729 chainNetFr3,741 netFr3,726 netFr3,738 360 chainMm10,727 chainMm10,739 chainNetMm10,730 chainNetMm10,742 netMm10,727 netMm10,739 3600 chainMm10,732 chainMm10,744 chainNetMm10,735 chainNetMm10,747 netMm10,732 netMm10,744 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 38-41 ensGene,203 ensemblGeneScaffold,142 39s ensGene,163 4 est,813 intronEst,897 mrna,530 xenoRefGene,314 40 uniprot,2002 400 chainMm10,728 chainMm10,740 chainNetMm10,731 chainNetMm10,743 netMm10,728 netMm10,740 transMapV5,109 4000 chainMm10,756 chainNetMm10,759 netMm10,756 41 est,767 intronEst,851 mrna,484 418-420 nestedRepeats,359 rmsk,382 42 xenoRefGene,354 425 chainFr3,727 chainFr3,739 chainNetFr3,730 chainNetFr3,742 netFr3,727 netFr3,739 442 gap,160 450 chainFr3,728 chainFr3,740 chainMm10,729 chainMm10,741 chainNetFr3,731 chainNetFr3,743 chainNetMm10,732 chainNetMm10,744 netFr3,728 netFr3,740 netMm10,729 netMm10,741 464-70 uniprot,2049 475 gap,165 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 est,478 est,519 est,545 intronEst,559 intronEst,600 intronEst,626 transMapEnsemblV5,9 transMapEnsemblV5,783 transMapEstV5,7 transMapEstV5,752 transMapRefSeqV5,8 transMapRefSeqV5,752 transMapRnaV5,8 transMapRnaV5,752 transMapV5,6 transMapV5,858 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 500 est,35 intronEst,46 5000 chainMm10,688 chainNetMm10,691 netMm10,688 554 gold,153 56600 chainMm10,736 chainMm10,748 chainNetMm10,739 chainNetMm10,751 netMm10,736 netMm10,748 57000 chainMm10,760 chainNetMm10,763 netMm10,760 573-80 microsat,133 simpleRepeat,93 57900 chainFr3,733 chainFr3,745 chainNetFr3,736 chainNetFr3,748 netFr3,733 netFr3,745 58300 chainFr3,757 chainNetFr3,760 netFr3,757 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 600 chainFr3,729 chainFr3,741 chainMm10,730 chainMm10,742 chainNetFr3,732 chainNetFr3,744 chainNetMm10,733 chainNetMm10,745 netFr3,729 netFr3,741 netMm10,730 netMm10,742 625 chainMm10,750 chainNetMm10,753 netMm10,750 637-44 augustusGene,313 transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 656-64 est,814 intronEst,898 mrna,531 xenoRefGene,315 657-63 nestedRepeats,392 rmsk,415 660 chainMm10,751 chainNetMm10,754 netMm10,751 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 gap,144 gap,149 700 chainMm10,752 chainNetMm10,755 netMm10,752 72111 chainFr3,722 chainMm10,722 chainNetFr3,725 chainNetMm10,725 netFr3,722 netMm10,722 743-8 nestedRepeats,414 rmsk,437 750 chainFr3,750 chainMm10,753 chainNetFr3,753 chainNetMm10,756 est,668 intronEst,749 netFr3,750 netMm10,753 7600 chainMm10,733 chainMm10,745 chainNetMm10,736 chainNetMm10,748 netMm10,733 netMm10,745 78-94 genscan,228 8000 chainMm10,757 chainNetMm10,760 netMm10,757 825 chainFr3,751 chainNetFr3,754 netFr3,751 850 chainFr3,752 chainNetFr3,755 netFr3,752 853 gap,145 869 gold,154 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainFr3,730 chainFr3,742 chainMm10,754 chainNetFr3,733 chainNetFr3,745 chainNetMm10,757 netFr3,730 netFr3,742 netMm10,754 9149143 genscan,230 93 uniprot,1483 96 est,716 intronEst,797 mrna,432 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainFr3,76 chainFr3,146 chainFr3,199 chainFr3,457 chainFr3,467 chainFr3,471 chainFr3,538 chainFr3,555 chainFr3,558 chainFr3,625 chainFr3,630 chainFr3,636 chainFr3,640 chainFr3,651 chainFr3,683 chainFr3,802 chainFr3,816 chainFr3,822 chainFr3,828 chainFr3,832 chainFr3,835 chainFr3,863 chainFr3,1053 chainFr3,1077 chainFr3,1093 chainMm10,76 chainMm10,146 chainMm10,199 chainMm10,457 chainMm10,467 chainMm10,471 chainMm10,538 chainMm10,555 chainMm10,558 chainMm10,625 chainMm10,630 chainMm10,636 chainMm10,640 chainMm10,651 chainMm10,683 chainMm10,802 chainMm10,816 chainMm10,822 chainMm10,828 chainMm10,832 chainMm10,835 chainMm10,863 chainMm10,1053 chainMm10,1077 chainMm10,1093 chainNetFr3,79 chainNetFr3,149 chainNetFr3,202 chainNetFr3,460 chainNetFr3,470 chainNetFr3,474 chainNetFr3,541 chainNetFr3,558 chainNetFr3,561 chainNetFr3,628 chainNetFr3,633 chainNetFr3,639 chainNetFr3,643 chainNetFr3,654 chainNetFr3,686 chainNetFr3,805 chainNetFr3,819 chainNetFr3,825 chainNetFr3,831 chainNetFr3,835 chainNetFr3,838 chainNetFr3,866 chainNetFr3,1056 chainNetFr3,1080 chainNetFr3,1096 chainNetMm10,79 chainNetMm10,149 chainNetMm10,202 chainNetMm10,460 chainNetMm10,470 chainNetMm10,474 chainNetMm10,541 chainNetMm10,558 chainNetMm10,561 chainNetMm10,628 chainNetMm10,633 chainNetMm10,639 chainNetMm10,643 chainNetMm10,654 chainNetMm10,686 chainNetMm10,805 chainNetMm10,819 chainNetMm10,825 chainNetMm10,831 chainNetMm10,835 chainNetMm10,838 chainNetMm10,866 chainNetMm10,1056 chainNetMm10,1080 chainNetMm10,1096 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 ensemblGeneScaffold,77 est,118 est,135 est,170 est,196 est,269 est,388 est,468 est,472 est,598 est,624 est,632 est,685 est,704 gap,100 gap,104 gc5BaseBw,44 genscan,102 genscan,132 gold,118 gold,124 intronEst,117 intronEst,151 intronEst,199 intronEst,216 intronEst,251 intronEst,277 intronEst,350 intronEst,469 intronEst,549 intronEst,553 intronEst,679 intronEst,705 intronEst,713 intronEst,766 intronEst,785 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netFr3,76 netFr3,146 netFr3,199 netFr3,457 netFr3,467 netFr3,471 netFr3,538 netFr3,555 netFr3,558 netFr3,625 netFr3,630 netFr3,636 netFr3,640 netFr3,651 netFr3,683 netFr3,802 netFr3,816 netFr3,822 netFr3,828 netFr3,832 netFr3,835 netFr3,863 netFr3,1053 netFr3,1077 netFr3,1093 netMm10,76 netMm10,146 netMm10,199 netMm10,457 netMm10,467 netMm10,471 netMm10,538 netMm10,555 netMm10,558 netMm10,625 netMm10,630 netMm10,636 netMm10,640 netMm10,651 netMm10,683 netMm10,802 netMm10,816 netMm10,822 netMm10,828 netMm10,832 netMm10,835 netMm10,863 netMm10,1053 netMm10,1077 netMm10,1093 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,116 transMapEnsemblV5,207 transMapEnsemblV5,320 transMapEnsemblV5,356 transMapEnsemblV5,400 transMapEnsemblV5,426 transMapEnsemblV5,479 transMapEnsemblV5,549 transMapEnsemblV5,628 transMapEnsemblV5,656 transMapEnsemblV5,715 transMapEstV5,52 transMapEstV5,85 transMapEstV5,176 transMapEstV5,289 transMapEstV5,325 transMapEstV5,369 transMapEstV5,395 transMapEstV5,448 transMapEstV5,518 transMapEstV5,597 transMapEstV5,625 transMapEstV5,684 transMapRefSeqV5,52 transMapRefSeqV5,85 transMapRefSeqV5,176 transMapRefSeqV5,289 transMapRefSeqV5,325 transMapRefSeqV5,369 transMapRefSeqV5,395 transMapRefSeqV5,448 transMapRefSeqV5,518 transMapRefSeqV5,597 transMapRefSeqV5,625 transMapRefSeqV5,684 transMapRnaV5,52 transMapRnaV5,85 transMapRnaV5,176 transMapRnaV5,289 transMapRnaV5,325 transMapRnaV5,369 transMapRnaV5,395 transMapRnaV5,448 transMapRnaV5,518 transMapRnaV5,597 transMapRnaV5,625 transMapRnaV5,684 transMapV5,53 transMapV5,191 transMapV5,282 transMapV5,395 transMapV5,431 transMapV5,475 transMapV5,501 transMapV5,554 transMapV5,624 transMapV5,703 transMapV5,731 transMapV5,790 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-90-25-100 chainFr3,676 chainMm10,676 chainNetFr3,679 chainNetMm10,679 netFr3,676 netMm10,676 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainFr3,588 chainMm10,588 chainNetFr3,591 chainNetMm10,591 netFr3,588 netMm10,588 about chainFr3,463 chainFr3,476 chainFr3,852 chainMm10,463 chainMm10,476 chainMm10,852 chainNetFr3,466 chainNetFr3,479 chainNetFr3,855 chainNetMm10,466 chainNetMm10,479 chainNetMm10,855 est,34 est,414 gap,36 genscan,127 gold,38 intronEst,45 intronEst,495 microsat,98 mrna,351 netFr3,463 netFr3,476 netFr3,852 netMm10,463 netMm10,476 netMm10,852 simpleRepeat,59 transMapEnsemblV5,133 transMapEstV5,102 transMapRefSeqV5,102 transMapRnaV5,102 transMapV5,208 xenoRefGene,178 above chainFr3,535 chainFr3,547 chainFr3,567 chainMm10,535 chainMm10,547 chainMm10,567 chainNetFr3,538 chainNetFr3,550 chainNetFr3,570 chainNetMm10,538 chainNetMm10,550 chainNetMm10,570 nestedRepeats,218 netFr3,535 netFr3,547 netFr3,567 netMm10,535 netMm10,547 netMm10,567 uniprot,1525 abundance chainFr3,181 chainMm10,181 chainNetFr3,184 chainNetMm10,184 netFr3,181 netMm10,181 acad chainFr3,1073 chainMm10,1073 chainNetFr3,1076 chainNetMm10,1076 netFr3,1073 netMm10,1073 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 transMapEnsemblV5,519 transMapEnsemblV5,578 transMapEstV5,488 transMapEstV5,547 transMapRefSeqV5,488 transMapRefSeqV5,547 transMapRnaV5,488 transMapRnaV5,547 transMapV5,594 transMapV5,653 uniprot,896 uniprot,1706 uniprot,1838 accessed transMapEnsemblV5,528 transMapEstV5,497 transMapRefSeqV5,497 transMapRnaV5,497 transMapV5,603 accessing transMapEnsemblV5,571 transMapEstV5,540 transMapRefSeqV5,540 transMapRnaV5,540 transMapV5,646 accession ucscToINSDC,2 ucscToINSDC,23 xenoRefGene,118 xenoRefGene,130 accession.version-srcuniq.destuniq transMapEnsemblV5,422 transMapEstV5,391 transMapRefSeqV5,391 transMapRnaV5,391 transMapV5,497 accessions transMapEnsemblV5,394 transMapEstV5,363 transMapRefSeqV5,363 transMapRnaV5,363 transMapV5,469 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainFr3,675 chainMm10,675 chainNetFr3,678 chainNetMm10,678 netFr3,675 netMm10,675 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 ensemblGeneScaffold,135 est,763 est,788 intronEst,847 intronEst,872 microsat,126 mrna,480 mrna,505 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainFr3,598 chainMm10,598 chainNetFr3,601 chainNetMm10,601 gap,127 nestedRepeats,147 netFr3,598 netMm10,598 transMapEnsemblV5,428 transMapEnsemblV5,438 transMapEstV5,397 transMapEstV5,407 transMapRefSeqV5,397 transMapRefSeqV5,407 transMapRnaV5,397 transMapRnaV5,407 transMapV5,503 transMapV5,513 uniprot,1187 additional nestedRepeats,288 rmsk,295 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainFr3,938 chainFr3,970 chainMm10,938 chainMm10,970 chainNetFr3,941 chainNetFr3,973 chainNetMm10,941 chainNetMm10,973 netFr3,938 netFr3,970 netMm10,938 netMm10,970 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainFr3,86 chainMm10,86 chainNetFr3,89 chainNetMm10,89 netFr3,86 netMm10,86 after chainFr3,910 chainMm10,910 chainNetFr3,913 chainNetMm10,913 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netFr3,910 netMm10,910 uniprot,294 uniprot,1329 ag intronEst,91 again transMapEnsemblV5,410 transMapEstV5,379 transMapRefSeqV5,379 transMapRnaV5,379 transMapV5,485 uniprot,629 uniprot,1500 against est,653 intronEst,37 intronEst,734 mrna,344 mrna,393 transMapEnsemblV5,126 transMapEstV5,95 transMapRefSeqV5,95 transMapRnaV5,95 transMapV5,201 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,50 gap,59 gap,66 gap,141 gold,49 gold,58 gold,65 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 ensemblGeneScaffold,91 ensemblGeneScaffold,128 transMapEnsemblV5,736 transMapEstV5,705 transMapRefSeqV5,705 transMapRnaV5,705 transMapV5,811 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainFr3,197 chainMm10,197 chainNetFr3,200 chainNetMm10,200 est,683 intronEst,764 netFr3,197 netMm10,197 uniprot,1216 alignable chainFr3,22 chainFr3,38 chainMm10,22 chainMm10,38 chainNetFr3,25 chainNetFr3,41 chainNetMm10,25 chainNetMm10,41 netFr3,22 netFr3,38 netMm10,22 netMm10,38 aligned chainFr3,591 chainMm10,591 chainNetFr3,594 chainNetMm10,594 est,652 est,688 intronEst,36 intronEst,155 intronEst,733 intronEst,769 mrna,392 mrna,404 netFr3,591 netMm10,591 transMapV5,117 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,221 xenoRefGene,243 aligning chainFr3,135 chainFr3,335 chainFr3,365 chainMm10,135 chainMm10,335 chainMm10,365 chainNetFr3,138 chainNetFr3,338 chainNetFr3,368 chainNetMm10,138 chainNetMm10,338 chainNetMm10,368 est,400 intronEst,481 netFr3,135 netFr3,335 netFr3,365 netMm10,135 netMm10,335 netMm10,365 uniprot,952 alignment chainFr3,261 chainFr3,1020 chainMm10,261 chainMm10,1020 chainNetFr3,264 chainNetFr3,1023 chainNetMm10,264 chainNetMm10,1023 est,58 est,423 est,429 est,441 est,693 est,806 intronEst,78 intronEst,142 intronEst,504 intronEst,510 intronEst,522 intronEst,774 intronEst,890 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netFr3,8 netFr3,261 netFr3,1020 netMm10,8 netMm10,261 netMm10,1020 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,104 transMapEnsemblV5,141 transMapEnsemblV5,197 transMapEnsemblV5,211 transMapEnsemblV5,390 transMapEnsemblV5,433 transMapEstV5,25 transMapEstV5,48 transMapEstV5,73 transMapEstV5,110 transMapEstV5,166 transMapEstV5,180 transMapEstV5,359 transMapEstV5,402 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,73 transMapRefSeqV5,110 transMapRefSeqV5,166 transMapRefSeqV5,180 transMapRefSeqV5,359 transMapRefSeqV5,402 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,73 transMapRnaV5,110 transMapRnaV5,166 transMapRnaV5,180 transMapRnaV5,359 transMapRnaV5,402 transMapV5,24 transMapV5,49 transMapV5,179 transMapV5,216 transMapV5,272 transMapV5,286 transMapV5,465 transMapV5,508 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 chainFr3,9 chainFr3,63 chainFr3,450 chainFr3,603 chainFr3,615 chainFr3,623 chainFr3,650 chainFr3,768 chainFr3,1040 chainFr3,1105 chainMm10,9 chainMm10,63 chainMm10,450 chainMm10,603 chainMm10,615 chainMm10,623 chainMm10,650 chainMm10,768 chainMm10,1040 chainMm10,1105 chainNetFr3,12 chainNetFr3,66 chainNetFr3,453 chainNetFr3,606 chainNetFr3,618 chainNetFr3,626 chainNetFr3,653 chainNetFr3,771 chainNetFr3,1043 chainNetFr3,1108 chainNetFr3Viewchain,10 chainNetFr3Viewnet,10 chainNetMm10,12 chainNetMm10,66 chainNetMm10,453 chainNetMm10,606 chainNetMm10,618 chainNetMm10,626 chainNetMm10,653 chainNetMm10,771 chainNetMm10,1043 chainNetMm10,1108 chainNetMm10Viewchain,10 chainNetMm10Viewnet,10 est,16 est,702 intronEst,17 intronEst,783 mrna,17 mrna,418 netFr3,63 netFr3,450 netFr3,603 netFr3,615 netFr3,623 netFr3,650 netFr3,768 netFr3,1040 netFr3,1105 netMm10,63 netMm10,450 netMm10,603 netMm10,615 netMm10,623 netMm10,650 netMm10,768 netMm10,1040 netMm10,1105 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,155 transMapEnsemblV5,168 transMapEnsemblV5,327 transMapEnsemblV5,340 transMapEnsemblV5,350 transMapEnsemblV5,373 transMapEnsemblV5,444 transMapEnsemblV5,456 transMapEnsemblV5,771 transMapEstV5,19 transMapEstV5,41 transMapEstV5,124 transMapEstV5,137 transMapEstV5,296 transMapEstV5,309 transMapEstV5,319 transMapEstV5,342 transMapEstV5,413 transMapEstV5,425 transMapEstV5,740 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,124 transMapRefSeqV5,137 transMapRefSeqV5,296 transMapRefSeqV5,309 transMapRefSeqV5,319 transMapRefSeqV5,342 transMapRefSeqV5,413 transMapRefSeqV5,425 transMapRefSeqV5,740 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,124 transMapRnaV5,137 transMapRnaV5,296 transMapRnaV5,309 transMapRnaV5,319 transMapRnaV5,342 transMapRnaV5,413 transMapRnaV5,425 transMapRnaV5,740 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,68 transMapV5,86 transMapV5,128 transMapV5,141 transMapV5,230 transMapV5,243 transMapV5,402 transMapV5,415 transMapV5,425 transMapV5,448 transMapV5,519 transMapV5,531 transMapV5,846 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,257 aligns transMapV5,163 all augustusGene,207 chainFr3,622 chainMm10,622 chainNetFr3,625 chainNetMm10,625 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 est,192 est,246 est,301 est,396 est,488 intronEst,120 intronEst,273 intronEst,327 intronEst,382 intronEst,477 intronEst,569 mrna,138 mrna,192 mrna,247 nestedRepeats,138 nestedRepeats,170 netFr3,622 netMm10,622 rmsk,65 transMapEnsemblV5,191 transMapEstV5,160 transMapRefSeqV5,160 transMapRnaV5,160 transMapV5,266 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allowed est,664 intronEst,745 allows augustusGene,168 chainFr3,81 chainMm10,81 chainNetFr3,84 chainNetMm10,84 est,391 intronEst,472 mrna,337 netFr3,81 netMm10,81 transMapEnsemblV5,119 transMapEnsemblV5,289 transMapEstV5,88 transMapEstV5,258 transMapRefSeqV5,88 transMapRefSeqV5,258 transMapRnaV5,88 transMapRnaV5,258 transMapV5,194 transMapV5,364 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,182 transMapEstV5,151 transMapRefSeqV5,151 transMapRnaV5,151 transMapV5,257 already chainFr3,813 chainMm10,813 chainNetFr3,816 chainNetMm10,816 netFr3,813 netMm10,813 also chainFr3,92 chainMm10,92 chainNetFr3,95 chainNetMm10,95 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 est,273 est,381 est,432 est,601 gap,32 gold,34 intronEst,354 intronEst,462 intronEst,513 intronEst,682 mrna,219 mrna,327 mrna,371 netFr3,92 netMm10,92 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,648 transMapEstV5,78 transMapEstV5,113 transMapEstV5,617 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,617 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,617 transMapV5,184 transMapV5,219 transMapV5,723 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter est,129 intronEst,210 mrna,75 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainFr3,153 chainFr3,180 chainFr3,186 chainMm10,153 chainMm10,180 chainMm10,186 chainNetFr3,156 chainNetFr3,183 chainNetFr3,189 chainNetMm10,156 chainNetMm10,183 chainNetMm10,189 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 est,450 est,497 est,580 gc5BaseBw,65 intronEst,61 intronEst,531 intronEst,578 intronEst,661 nestedRepeats,196 nestedRepeats,347 netFr3,153 netFr3,180 netFr3,186 netMm10,153 netMm10,180 netMm10,186 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis transMapEnsemblV5,540 transMapEstV5,509 transMapRefSeqV5,509 transMapRnaV5,509 transMapV5,615 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainFr3,98 chainFr3,113 chainFr3,229 chainFr3,237 chainFr3,251 chainFr3,291 chainFr3,313 chainFr3,439 chainFr3,594 chainFr3,629 chainFr3,638 chainFr3,779 chainFr3,857 chainFr3,889 chainFr3,900 chainFr3,909 chainFr3,934 chainFr3,949 chainFr3,974 chainFr3,980 chainFr3,986 chainFr3,993 chainFr3,999 chainFr3,1063 chainFr3,1068 chainMm10,98 chainMm10,113 chainMm10,229 chainMm10,237 chainMm10,251 chainMm10,291 chainMm10,313 chainMm10,439 chainMm10,594 chainMm10,629 chainMm10,638 chainMm10,779 chainMm10,857 chainMm10,889 chainMm10,900 chainMm10,909 chainMm10,934 chainMm10,949 chainMm10,974 chainMm10,980 chainMm10,986 chainMm10,993 chainMm10,999 chainMm10,1063 chainMm10,1068 chainNetFr3,10 chainNetFr3,101 chainNetFr3,116 chainNetFr3,232 chainNetFr3,240 chainNetFr3,254 chainNetFr3,294 chainNetFr3,316 chainNetFr3,442 chainNetFr3,597 chainNetFr3,632 chainNetFr3,641 chainNetFr3,782 chainNetFr3,860 chainNetFr3,892 chainNetFr3,903 chainNetFr3,912 chainNetFr3,937 chainNetFr3,952 chainNetFr3,977 chainNetFr3,983 chainNetFr3,989 chainNetFr3,996 chainNetFr3,1002 chainNetFr3,1066 chainNetFr3,1071 chainNetFr3Viewchain,8 chainNetFr3Viewnet,8 chainNetMm10,10 chainNetMm10,101 chainNetMm10,116 chainNetMm10,232 chainNetMm10,240 chainNetMm10,254 chainNetMm10,294 chainNetMm10,316 chainNetMm10,442 chainNetMm10,597 chainNetMm10,632 chainNetMm10,641 chainNetMm10,782 chainNetMm10,860 chainNetMm10,892 chainNetMm10,903 chainNetMm10,912 chainNetMm10,937 chainNetMm10,952 chainNetMm10,977 chainNetMm10,983 chainNetMm10,989 chainNetMm10,996 chainNetMm10,1002 chainNetMm10,1066 chainNetMm10,1071 chainNetMm10Viewchain,8 chainNetMm10Viewnet,8 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 ensemblGeneScaffold,8 ensemblGeneScaffold,33 ensemblGeneScaffold,74 est,10 est,26 est,48 est,88 est,132 est,293 est,457 est,471 est,479 est,607 est,713 gap,5 gap,81 gap,103 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,92 gold,106 gold,112 intronEst,11 intronEst,27 intronEst,88 intronEst,132 intronEst,169 intronEst,213 intronEst,374 intronEst,538 intronEst,552 intronEst,560 intronEst,688 intronEst,794 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netFr3,98 netFr3,113 netFr3,229 netFr3,237 netFr3,251 netFr3,291 netFr3,313 netFr3,439 netFr3,594 netFr3,629 netFr3,638 netFr3,779 netFr3,857 netFr3,889 netFr3,900 netFr3,909 netFr3,934 netFr3,949 netFr3,974 netFr3,980 netFr3,986 netFr3,993 netFr3,999 netFr3,1063 netFr3,1068 netMm10,98 netMm10,113 netMm10,229 netMm10,237 netMm10,251 netMm10,291 netMm10,313 netMm10,439 netMm10,594 netMm10,629 netMm10,638 netMm10,779 netMm10,857 netMm10,889 netMm10,900 netMm10,909 netMm10,934 netMm10,949 netMm10,974 netMm10,980 netMm10,986 netMm10,993 netMm10,999 netMm10,1063 netMm10,1068 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,94 transMapEnsemblV5,174 transMapEnsemblV5,199 transMapEnsemblV5,366 transMapEnsemblV5,368 transMapEnsemblV5,392 transMapEnsemblV5,409 transMapEnsemblV5,435 transMapEnsemblV5,466 transMapEnsemblV5,482 transMapEnsemblV5,497 transMapEnsemblV5,554 transMapEnsemblV5,639 transMapEnsemblV5,688 transMapEnsemblV5,702 transMapEnsemblV5,709 transMapEnsemblV5,767 transMapEstV5,9 transMapEstV5,63 transMapEstV5,143 transMapEstV5,168 transMapEstV5,335 transMapEstV5,337 transMapEstV5,361 transMapEstV5,378 transMapEstV5,404 transMapEstV5,435 transMapEstV5,451 transMapEstV5,466 transMapEstV5,523 transMapEstV5,608 transMapEstV5,657 transMapEstV5,671 transMapEstV5,678 transMapEstV5,736 transMapRefSeqV5,10 transMapRefSeqV5,63 transMapRefSeqV5,143 transMapRefSeqV5,168 transMapRefSeqV5,335 transMapRefSeqV5,337 transMapRefSeqV5,361 transMapRefSeqV5,378 transMapRefSeqV5,404 transMapRefSeqV5,435 transMapRefSeqV5,451 transMapRefSeqV5,466 transMapRefSeqV5,523 transMapRefSeqV5,608 transMapRefSeqV5,657 transMapRefSeqV5,671 transMapRefSeqV5,678 transMapRefSeqV5,736 transMapRnaV5,10 transMapRnaV5,63 transMapRnaV5,143 transMapRnaV5,168 transMapRnaV5,335 transMapRnaV5,337 transMapRnaV5,361 transMapRnaV5,378 transMapRnaV5,404 transMapRnaV5,435 transMapRnaV5,451 transMapRnaV5,466 transMapRnaV5,523 transMapRnaV5,608 transMapRnaV5,657 transMapRnaV5,671 transMapRnaV5,678 transMapRnaV5,736 transMapV5,8 transMapV5,16 transMapV5,74 transMapV5,88 transMapV5,139 transMapV5,162 transMapV5,169 transMapV5,249 transMapV5,274 transMapV5,441 transMapV5,443 transMapV5,467 transMapV5,484 transMapV5,510 transMapV5,541 transMapV5,557 transMapV5,572 transMapV5,629 transMapV5,714 transMapV5,763 transMapV5,777 transMapV5,784 transMapV5,842 ucscToINSDC,11 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotate gap,131 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainFr3,302 chainMm10,302 chainNetFr3,305 chainNetMm10,305 ensGene,165 ensemblGeneScaffold,105 netFr3,302 netMm10,302 rmsk,38 transMapEnsemblV5,609 transMapEstV5,578 transMapRefSeqV5,578 transMapRnaV5,578 transMapV5,684 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations ensGene,156 genscan,120 nestedRepeats,71 transMapEnsemblV5,60 transMapEnsemblV5,542 transMapEnsemblV5,703 transMapEnsemblV5,711 transMapEstV5,511 transMapEstV5,672 transMapEstV5,680 transMapRefSeqV5,511 transMapRefSeqV5,672 transMapRefSeqV5,680 transMapRnaV5,511 transMapRnaV5,672 transMapRnaV5,680 transMapV5,76 transMapV5,617 transMapV5,778 transMapV5,786 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 another transMapV5,81 any est,316 est,550 intronEst,397 intronEst,631 mrna,262 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 transMapEnsemblV5,566 transMapEstV5,535 transMapRefSeqV5,535 transMapRnaV5,535 transMapV5,641 appending transMapEnsemblV5,399 transMapEstV5,368 transMapRefSeqV5,368 transMapRnaV5,368 transMapV5,474 apply est,188 intronEst,269 mrna,134 approach uniprot,1531 appropriate xenoRefGene,112 apr est,811 genscan,224 intronEst,895 mrna,528 xenoRefGene,312 apsects gc5BaseBw,51 archive ensGene,142 uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainFr3,21 chainFr3,40 chainFr3,53 chainFr3,142 chainFr3,212 chainFr3,223 chainFr3,324 chainFr3,393 chainFr3,414 chainFr3,421 chainFr3,504 chainFr3,695 chainMm10,21 chainMm10,40 chainMm10,53 chainMm10,142 chainMm10,212 chainMm10,223 chainMm10,324 chainMm10,393 chainMm10,414 chainMm10,421 chainMm10,504 chainMm10,695 chainNetFr3,24 chainNetFr3,43 chainNetFr3,56 chainNetFr3,145 chainNetFr3,215 chainNetFr3,226 chainNetFr3,327 chainNetFr3,396 chainNetFr3,417 chainNetFr3,424 chainNetFr3,507 chainNetFr3,698 chainNetMm10,24 chainNetMm10,43 chainNetMm10,56 chainNetMm10,145 chainNetMm10,215 chainNetMm10,226 chainNetMm10,327 chainNetMm10,396 chainNetMm10,417 chainNetMm10,424 chainNetMm10,507 chainNetMm10,698 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 ensemblGeneScaffold,29 est,30 est,67 est,149 est,159 gap,24 gap,69 genscan,25 genscan,160 gold,26 gold,84 gold,101 intronEst,41 intronEst,230 intronEst,240 intronEst,804 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netFr3,21 netFr3,40 netFr3,53 netFr3,142 netFr3,212 netFr3,223 netFr3,324 netFr3,393 netFr3,414 netFr3,421 netFr3,504 netFr3,695 netMm10,21 netMm10,40 netMm10,53 netMm10,142 netMm10,212 netMm10,223 netMm10,324 netMm10,393 netMm10,414 netMm10,421 netMm10,504 netMm10,695 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,454 transMapEnsemblV5,461 transMapEnsemblV5,470 transMapEnsemblV5,504 transMapEnsemblV5,514 transMapEnsemblV5,543 transMapEnsemblV5,582 transMapEstV5,42 transMapEstV5,423 transMapEstV5,430 transMapEstV5,439 transMapEstV5,473 transMapEstV5,483 transMapEstV5,512 transMapEstV5,551 transMapRefSeqV5,42 transMapRefSeqV5,423 transMapRefSeqV5,430 transMapRefSeqV5,439 transMapRefSeqV5,473 transMapRefSeqV5,483 transMapRefSeqV5,512 transMapRefSeqV5,551 transMapRnaV5,42 transMapRnaV5,423 transMapRnaV5,430 transMapRnaV5,439 transMapRnaV5,473 transMapRnaV5,483 transMapRnaV5,512 transMapRnaV5,551 transMapV5,41 transMapV5,69 transMapV5,529 transMapV5,536 transMapV5,545 transMapV5,579 transMapV5,589 transMapV5,618 transMapV5,657 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainFr3,947 chainMm10,947 chainNetFr3,950 chainNetMm10,950 nestedRepeats,305 netFr3,947 netMm10,947 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 as augustusGene,77 augustusGene,79 chainFr3,466 chainFr3,506 chainFr3,529 chainFr3,544 chainFr3,806 chainFr3,861 chainFr3,919 chainMm10,466 chainMm10,506 chainMm10,529 chainMm10,544 chainMm10,806 chainMm10,861 chainMm10,919 chainNetFr3,469 chainNetFr3,509 chainNetFr3,532 chainNetFr3,547 chainNetFr3,809 chainNetFr3,864 chainNetFr3,922 chainNetMm10,469 chainNetMm10,509 chainNetMm10,532 chainNetMm10,547 chainNetMm10,809 chainNetMm10,864 chainNetMm10,922 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 est,597 gap,71 genscan,35 genscan,37 intronEst,678 microsat,21 nestedRepeats,125 netFr3,466 netFr3,506 netFr3,529 netFr3,544 netFr3,806 netFr3,861 netFr3,919 netMm10,466 netMm10,506 netMm10,529 netMm10,544 netMm10,806 netMm10,861 netMm10,919 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,188 transMapEnsemblV5,215 transMapEnsemblV5,227 transMapEnsemblV5,516 transMapEnsemblV5,627 transMapEstV5,157 transMapEstV5,184 transMapEstV5,196 transMapEstV5,485 transMapEstV5,596 transMapRefSeqV5,157 transMapRefSeqV5,184 transMapRefSeqV5,196 transMapRefSeqV5,485 transMapRefSeqV5,596 transMapRnaV5,157 transMapRnaV5,184 transMapRnaV5,196 transMapRnaV5,485 transMapRnaV5,596 transMapV5,263 transMapV5,290 transMapV5,302 transMapV5,591 transMapV5,702 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 assemblies augustusGene,196 augustusGene,237 chainFr3,323 chainFr3,586 chainMm10,323 chainMm10,586 chainNetFr3,326 chainNetFr3,589 chainNetMm10,326 chainNetMm10,589 netFr3,323 netFr3,586 netMm10,323 netMm10,586 rmsk,107 transMapEnsemblV5,193 transMapEstV5,162 transMapRefSeqV5,162 transMapRnaV5,162 transMapV5,268 assembly augustusGene,197 chainFr3,151 chainFr3,159 chainFr3,310 chainMm10,151 chainMm10,159 chainMm10,310 chainNetFr3,154 chainNetFr3,162 chainNetFr3,313 chainNetMm10,154 chainNetMm10,162 chainNetMm10,313 ensemblGeneScaffold,2 ensemblGeneScaffold,6 ensemblGeneScaffold,24 gap,20 gap,22 gap,29 gap,38 gap,46 gap,117 gold,1 gold,2 gold,22 gold,24 gold,31 gold,40 gold,45 netFr3,151 netFr3,159 netFr3,310 netMm10,151 netMm10,159 netMm10,310 transMapV5,106 transMapV5,124 transMapV5,135 ucscToINSDC,40 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assembly.txt ensemblGeneScaffold,73 assigned transMapEnsemblV5,462 transMapEstV5,431 transMapRefSeqV5,431 transMapRnaV5,431 transMapV5,537 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 est,110 gc5BaseBw,34 intronEst,191 rmsk,224 simpleRepeat,51 transMapEnsemblV5,583 transMapEstV5,552 transMapRefSeqV5,552 transMapRnaV5,552 transMapV5,658 uniprot,787 associates ucscToINSDC,16 astashyn xenoRefGene,328 at chainFr3,423 chainFr3,801 chainFr3,923 chainFr3,958 chainFr3,963 chainFr3,1004 chainMm10,423 chainMm10,801 chainMm10,923 chainMm10,958 chainMm10,963 chainMm10,1004 chainNetFr3,426 chainNetFr3,804 chainNetFr3,926 chainNetFr3,961 chainNetFr3,966 chainNetFr3,1007 chainNetMm10,426 chainNetMm10,804 chainNetMm10,926 chainNetMm10,961 chainNetMm10,966 chainNetMm10,1007 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 est,265 est,549 est,594 est,714 est,730 gap,128 intronEst,67 intronEst,82 intronEst,107 intronEst,346 intronEst,630 intronEst,675 intronEst,795 intronEst,814 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netFr3,423 netFr3,801 netFr3,923 netFr3,958 netFr3,963 netFr3,1004 netMm10,423 netMm10,801 netMm10,923 netMm10,958 netMm10,963 netMm10,1004 rmsk,243 rmsk,267 transMapEnsemblV5,295 transMapEnsemblV5,684 transMapEstV5,264 transMapEstV5,653 transMapRefSeqV5,264 transMapRefSeqV5,653 transMapRnaV5,264 transMapRnaV5,653 transMapV5,118 transMapV5,370 transMapV5,759 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 atlantic chainFr3,72 chainFr3,99 chainFr3,157 chainFr3,204 chainFr3,271 chainFr3,279 chainFr3,579 chainFr3,632 chainMm10,72 chainMm10,99 chainMm10,157 chainMm10,204 chainMm10,271 chainMm10,279 chainMm10,579 chainMm10,632 chainNetFr3,75 chainNetFr3,102 chainNetFr3,160 chainNetFr3,207 chainNetFr3,274 chainNetFr3,282 chainNetFr3,582 chainNetFr3,635 chainNetMm10,75 chainNetMm10,102 chainNetMm10,160 chainNetMm10,207 chainNetMm10,274 chainNetMm10,282 chainNetMm10,582 chainNetMm10,635 est,1 est,4 est,18 est,646 gap,17 gold,19 intronEst,3 intronEst,19 intronEst,126 intronEst,727 mrna,1 mrna,4 mrna,19 mrna,388 netFr3,72 netFr3,99 netFr3,157 netFr3,204 netFr3,271 netFr3,279 netFr3,579 netFr3,632 netMm10,72 netMm10,99 netMm10,157 netMm10,204 netMm10,271 netMm10,279 netMm10,579 netMm10,632 transMapEnsemblV5,90 transMapEnsemblV5,203 transMapEnsemblV5,334 transMapEstV5,59 transMapEstV5,172 transMapEstV5,303 transMapRefSeqV5,59 transMapRefSeqV5,172 transMapRefSeqV5,303 transMapRnaV5,59 transMapRnaV5,172 transMapRnaV5,303 transMapV5,60 transMapV5,278 transMapV5,409 xenoRefGene,24 xenoRefGene,224 attempt est,581 intronEst,662 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,539 transMapEstV5,508 transMapRefSeqV5,508 transMapRnaV5,508 transMapV5,614 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 rmsk,73 transMapEnsemblV5,189 transMapEnsemblV5,247 transMapEstV5,158 transMapEstV5,216 transMapRefSeqV5,158 transMapRefSeqV5,216 transMapRnaV5,158 transMapRnaV5,216 transMapV5,264 transMapV5,322 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainFr3,607 chainFr3,614 chainMm10,607 chainMm10,614 chainNetFr3,610 chainNetFr3,617 chainNetMm10,610 chainNetMm10,617 netFr3,607 netFr3,614 netMm10,607 netMm10,614 axtchain chainFr3,619 chainFr3,706 chainFr3,954 chainMm10,619 chainMm10,706 chainMm10,954 chainNetFr3,622 chainNetFr3,709 chainNetFr3,957 chainNetMm10,622 chainNetMm10,709 chainNetMm10,957 netFr3,619 netFr3,706 netFr3,954 netMm10,619 netMm10,706 netMm10,954 b transMapEnsemblV5,720 transMapEnsemblV5,730 transMapEstV5,689 transMapEstV5,699 transMapRefSeqV5,689 transMapRefSeqV5,699 transMapRnaV5,689 transMapRnaV5,699 transMapV5,795 transMapV5,805 back chainFr3,599 chainMm10,599 chainNetFr3,602 chainNetMm10,602 netFr3,599 netMm10,599 baertsch augustusGene,290 chainFr3,992 chainFr3,1050 chainFr3,1096 chainMm10,992 chainMm10,1050 chainMm10,1096 chainNetFr3,995 chainNetFr3,1053 chainNetFr3,1099 chainNetMm10,995 chainNetMm10,1053 chainNetMm10,1099 netFr3,992 netFr3,1050 netFr3,1096 netMm10,992 netMm10,1050 netMm10,1096 transMapEnsemblV5,761 transMapEstV5,730 transMapRefSeqV5,730 transMapRnaV5,730 transMapV5,836 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 ensemblGeneScaffold,109 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 est,386 est,420 est,697 est,705 est,717 intronEst,467 intronEst,501 intronEst,778 intronEst,786 intronEst,798 mrna,359 mrna,413 mrna,421 mrna,433 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level transMapEnsemblV5,321 transMapEstV5,290 transMapRefSeqV5,290 transMapRnaV5,290 transMapV5,396 based augustusGene,28 chainFr3,326 chainFr3,352 chainMm10,326 chainMm10,352 chainNetFr3,329 chainNetFr3,355 chainNetMm10,329 chainNetMm10,355 genscan,26 netFr3,326 netFr3,352 netMm10,326 netMm10,352 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 est,36 est,397 est,670 gap,150 gap,166 gc5BaseBw,25 intronEst,47 intronEst,85 intronEst,478 intronEst,751 transMapV5,166 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 bc149621.1-1 transMapEnsemblV5,465 transMapEnsemblV5,476 transMapEstV5,434 transMapEstV5,445 transMapRefSeqV5,434 transMapRefSeqV5,445 transMapRnaV5,434 transMapRnaV5,445 transMapV5,540 transMapV5,551 bc149621.1-1.1 transMapEnsemblV5,487 transMapEstV5,456 transMapRefSeqV5,456 transMapRnaV5,456 transMapV5,562 bc149621.1-2 transMapEnsemblV5,467 transMapEnsemblV5,489 transMapEstV5,436 transMapEstV5,458 transMapRefSeqV5,436 transMapRefSeqV5,458 transMapRnaV5,436 transMapRnaV5,458 transMapV5,542 transMapV5,564 bc149621.1-2.1 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 bc149621.1-2.2 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 be augustusGene,99 chainFr3,108 chainFr3,433 chainMm10,108 chainMm10,433 chainNetFr3,111 chainNetFr3,436 chainNetMm10,111 chainNetMm10,436 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 est,109 est,122 est,144 est,253 est,263 est,274 est,305 est,323 est,333 est,382 est,433 est,529 est,637 gc5BaseBw,41 intronEst,58 intronEst,81 intronEst,190 intronEst,203 intronEst,225 intronEst,334 intronEst,344 intronEst,355 intronEst,386 intronEst,404 intronEst,414 intronEst,463 intronEst,514 intronEst,610 intronEst,718 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 nestedRepeats,269 nestedRepeats,291 netFr3,108 netFr3,433 netMm10,108 netMm10,433 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,110 transMapEnsemblV5,145 transMapEnsemblV5,527 transMapEnsemblV5,556 transMapEnsemblV5,611 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,649 transMapEstV5,79 transMapEstV5,114 transMapEstV5,496 transMapEstV5,525 transMapEstV5,580 transMapEstV5,588 transMapEstV5,611 transMapEstV5,618 transMapRefSeqV5,79 transMapRefSeqV5,114 transMapRefSeqV5,496 transMapRefSeqV5,525 transMapRefSeqV5,580 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,618 transMapRnaV5,79 transMapRnaV5,114 transMapRnaV5,496 transMapRnaV5,525 transMapRnaV5,580 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,618 transMapV5,185 transMapV5,220 transMapV5,602 transMapV5,631 transMapV5,686 transMapV5,694 transMapV5,717 transMapV5,724 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 bears est,94 intronEst,175 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 est,629 intronEst,710 uniprot,674 bed3 windowmaskerSdust,76 been chainFr3,574 chainMm10,574 chainNetFr3,577 chainNetMm10,577 intronEst,8 nestedRepeats,89 netFr3,574 netMm10,574 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainFr3,908 chainMm10,908 chainNetFr3,911 chainNetMm10,911 est,566 intronEst,647 netFr3,908 netMm10,908 uniprot,934 below chainFr3,682 chainMm10,682 chainNetFr3,685 chainNetMm10,685 ensGene,54 ensemblGeneScaffold,97 genscan,154 genscan,168 nestedRepeats,68 netFr3,682 netMm10,682 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,747 est,775 intronEst,831 intronEst,859 microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainFr3,269 chainFr3,516 chainMm10,269 chainMm10,516 chainNetFr3,272 chainNetFr3,519 chainNetMm10,272 chainNetMm10,519 est,712 intronEst,793 mrna,428 netFr3,269 netFr3,516 netMm10,269 netMm10,516 transMapEnsemblV5,242 transMapEstV5,211 transMapRefSeqV5,211 transMapRnaV5,211 transMapV5,67 transMapV5,317 uniprot,1074 uniprot,1415 xenoRefGene,267 beta uniprot,364 better est,74 mrna,55 between chainFr3,51 chainFr3,624 chainFr3,855 chainMm10,51 chainMm10,624 chainMm10,855 chainNetFr3,54 chainNetFr3,627 chainNetFr3,858 chainNetMm10,54 chainNetMm10,627 chainNetMm10,858 est,17 est,85 gap,153 gold,98 gold,103 intronEst,18 intronEst,76 intronEst,166 mrna,18 netFr3,51 netFr3,624 netFr3,855 netMm10,51 netMm10,624 netMm10,855 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed transMapEnsemblV5,616 transMapEnsemblV5,661 transMapEstV5,585 transMapEstV5,630 transMapRefSeqV5,585 transMapRefSeqV5,630 transMapRnaV5,585 transMapRnaV5,630 transMapV5,691 transMapV5,736 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,546 transMapEstV5,515 transMapRefSeqV5,515 transMapRnaV5,515 transMapV5,621 binaries transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1781 biocomput chainFr3,1043 chainMm10,1043 chainNetFr3,1046 chainNetMm10,1046 netFr3,1043 netMm10,1043 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 biological uniprot,320 biology genscan,200 birds augustusGene,203 birney ensGene,172 ensemblGeneScaffold,111 black ensemblGeneScaffold,32 gap,72 gap,111 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like est,805 intronEst,889 mrna,522 xenoRefGene,306 blastz chainFr3,920 chainFr3,1107 chainMm10,920 chainMm10,1107 chainNetFr3,923 chainNetFr3,1110 chainNetMm10,923 chainNetMm10,1110 netFr3,920 netFr3,1107 netMm10,920 netMm10,1107 transMapEnsemblV5,78 transMapEnsemblV5,196 transMapEstV5,47 transMapEstV5,165 transMapRefSeqV5,47 transMapRefSeqV5,165 transMapRnaV5,47 transMapRnaV5,165 transMapV5,48 transMapV5,144 transMapV5,271 blat est,657 est,666 est,803 intronEst,738 intronEst,747 intronEst,887 mrna,398 mrna,520 transMapEnsemblV5,167 transMapEstV5,136 transMapRefSeqV5,136 transMapRnaV5,136 transMapV5,126 transMapV5,150 transMapV5,157 transMapV5,242 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainFr3,44 chainFr3,647 chainFr3,668 chainMm10,44 chainMm10,647 chainMm10,668 chainNetFr3,47 chainNetFr3,650 chainNetFr3,671 chainNetMm10,47 chainNetMm10,650 chainNetMm10,671 gold,108 gold,135 intronEst,79 netFr3,44 netFr3,647 netFr3,668 netMm10,44 netMm10,647 netMm10,668 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainFr3,96 chainFr3,117 chainFr3,171 chainFr3,898 chainMm10,96 chainMm10,117 chainMm10,171 chainMm10,898 chainNetFr3,99 chainNetFr3,120 chainNetFr3,174 chainNetFr3,901 chainNetMm10,99 chainNetMm10,120 chainNetMm10,174 chainNetMm10,901 netFr3,96 netFr3,117 netFr3,171 netFr3,898 netMm10,96 netMm10,117 netMm10,171 netMm10,898 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 bothgap chainFr3,749 chainMm10,749 chainNetFr3,752 chainNetMm10,752 netFr3,749 netMm10,749 boundaries gold,83 box chainFr3,376 chainFr3,458 chainMm10,376 chainMm10,458 chainNetFr3,379 chainNetFr3,461 chainNetMm10,379 chainNetMm10,461 est,208 est,219 est,259 gap,112 intronEst,289 intronEst,300 intronEst,340 mrna,154 mrna,165 mrna,205 netFr3,376 netFr3,458 netMm10,376 netMm10,458 xenoRefGene,216 boxes chainFr3,123 chainFr3,133 chainFr3,447 chainMm10,123 chainMm10,133 chainMm10,447 chainNetFr3,126 chainNetFr3,136 chainNetFr3,450 chainNetMm10,126 chainNetMm10,136 chainNetMm10,450 est,179 gap,73 intronEst,260 mrna,125 nestedRepeats,126 netFr3,123 netFr3,133 netFr3,447 netMm10,123 netMm10,133 netMm10,447 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch transMapEnsemblV5,220 transMapEstV5,189 transMapRefSeqV5,189 transMapRnaV5,189 transMapV5,295 branch-point augustusGene,55 brejov transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 brian uniprot,1959 bridge gold,133 bridged gap,101 briefly uniprot,778 brown gold,93 gold,107 xenoRefGene,322 browser chainFr3,978 chainMm10,978 chainNetFr3,981 chainNetMm10,981 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 est,226 est,350 est,367 intronEst,307 intronEst,431 intronEst,448 mrna,172 mrna,296 mrna,313 nestedRepeats,243 netFr3,978 netMm10,978 transMapEnsemblV5,37 transMapEnsemblV5,165 transMapEnsemblV5,533 transMapEstV5,35 transMapEstV5,134 transMapEstV5,502 transMapRefSeqV5,35 transMapRefSeqV5,134 transMapRefSeqV5,502 transMapRnaV5,35 transMapRnaV5,134 transMapRnaV5,502 transMapV5,34 transMapV5,240 transMapV5,608 ucscToINSDC,19 uniprot,1544 uniprot,1721 browsing uniprot,1662 build uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainFr3,549 chainMm10,549 chainNetFr3,552 chainNetMm10,552 est,486 est,543 est,596 intronEst,567 intronEst,624 intronEst,677 netFr3,549 netMm10,549 rmsk,311 uniprot,638 uniprot,1047 button chainFr3,347 chainMm10,347 chainNetFr3,350 chainNetMm10,350 netFr3,347 netMm10,347 by augustusGene,147 augustusGene,266 augustusGene,282 chainFr3,110 chainFr3,126 chainFr3,317 chainFr3,380 chainFr3,417 chainFr3,435 chainFr3,815 chainFr3,927 chainFr3,946 chainFr3,966 chainFr3,990 chainFr3,1011 chainMm10,110 chainMm10,126 chainMm10,317 chainMm10,380 chainMm10,417 chainMm10,435 chainMm10,815 chainMm10,927 chainMm10,946 chainMm10,966 chainMm10,990 chainMm10,1011 chainNetFr3,113 chainNetFr3,129 chainNetFr3,320 chainNetFr3,383 chainNetFr3,420 chainNetFr3,438 chainNetFr3,818 chainNetFr3,930 chainNetFr3,949 chainNetFr3,969 chainNetFr3,993 chainNetFr3,1014 chainNetMm10,113 chainNetMm10,129 chainNetMm10,320 chainNetMm10,383 chainNetMm10,420 chainNetMm10,438 chainNetMm10,818 chainNetMm10,930 chainNetMm10,949 chainNetMm10,969 chainNetMm10,993 chainNetMm10,1014 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 ensemblGeneScaffold,61 est,268 est,496 est,665 est,743 gap,94 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 intronEst,93 intronEst,349 intronEst,577 intronEst,746 intronEst,827 microsat,110 mrna,214 mrna,460 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netFr3,110 netFr3,126 netFr3,317 netFr3,380 netFr3,417 netFr3,435 netFr3,815 netFr3,927 netFr3,946 netFr3,966 netFr3,990 netFr3,1011 netMm10,110 netMm10,126 netMm10,317 netMm10,380 netMm10,417 netMm10,435 netMm10,815 netMm10,927 netMm10,946 netMm10,966 netMm10,990 netMm10,1011 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,229 transMapEnsemblV5,398 transMapEnsemblV5,681 transMapEnsemblV5,699 transMapEnsemblV5,705 transMapEnsemblV5,743 transMapEstV5,21 transMapEstV5,198 transMapEstV5,367 transMapEstV5,650 transMapEstV5,668 transMapEstV5,674 transMapEstV5,712 transMapRefSeqV5,21 transMapRefSeqV5,198 transMapRefSeqV5,367 transMapRefSeqV5,650 transMapRefSeqV5,668 transMapRefSeqV5,674 transMapRefSeqV5,712 transMapRnaV5,21 transMapRnaV5,198 transMapRnaV5,367 transMapRnaV5,650 transMapRnaV5,668 transMapRnaV5,674 transMapRnaV5,712 transMapV5,20 transMapV5,304 transMapV5,473 transMapV5,756 transMapV5,774 transMapV5,780 transMapV5,818 ucscToINSDC,50 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 transMapEnsemblV5,728 transMapEnsemblV5,734 transMapEstV5,697 transMapEstV5,703 transMapRefSeqV5,697 transMapRefSeqV5,703 transMapRnaV5,697 transMapRnaV5,703 transMapV5,803 transMapV5,809 windowmaskerSdust,30 c-90100-100-25 chainFr3,677 chainMm10,677 chainNetFr3,680 chainNetMm10,680 netFr3,677 netMm10,677 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainFr3,962 chainFr3,1008 chainMm10,962 chainMm10,1008 chainNetFr3,965 chainNetFr3,1011 chainNetMm10,965 chainNetMm10,1011 netFr3,962 netFr3,1008 netMm10,962 netMm10,1008 cameron ensGene,174 ensemblGeneScaffold,113 can augustusGene,98 chainFr3,91 chainFr3,107 chainMm10,91 chainMm10,107 chainNetFr3,94 chainNetFr3,110 chainNetMm10,94 chainNetMm10,110 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 est,121 est,252 intronEst,202 intronEst,333 mrna,67 mrna,198 netFr3,91 netFr3,107 netMm10,91 netMm10,107 rmsk,116 simpleRepeat,35 transMapEnsemblV5,526 transMapEnsemblV5,555 transMapEnsemblV5,610 transMapEnsemblV5,618 transMapEnsemblV5,641 transMapEnsemblV5,647 transMapEstV5,495 transMapEstV5,524 transMapEstV5,579 transMapEstV5,587 transMapEstV5,610 transMapEstV5,616 transMapRefSeqV5,495 transMapRefSeqV5,524 transMapRefSeqV5,579 transMapRefSeqV5,587 transMapRefSeqV5,610 transMapRefSeqV5,616 transMapRnaV5,495 transMapRnaV5,524 transMapRnaV5,579 transMapRnaV5,587 transMapRnaV5,610 transMapRnaV5,616 transMapV5,601 transMapV5,630 transMapV5,685 transMapV5,693 transMapV5,716 transMapV5,722 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 cannot uniprot,1269 canonical intronEst,70 cap-selected est,559 intronEst,640 cap-selection est,568 intronEst,649 cases chainFr3,193 chainFr3,404 chainMm10,193 chainMm10,404 chainNetFr3,196 chainNetFr3,407 chainNetMm10,196 chainNetMm10,407 netFr3,193 netFr3,404 netMm10,193 netMm10,404 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainFr3,505 chainMm10,505 chainNetFr3,508 chainNetMm10,508 netFr3,505 netMm10,505 cauldron chainFr3,1060 chainMm10,1060 chainNetFr3,1063 chainNetMm10,1063 netFr3,1060 netMm10,1060 cause chainFr3,487 chainMm10,487 chainNetFr3,490 chainNetMm10,490 netFr3,487 netMm10,487 caused chainFr3,109 chainMm10,109 chainNetFr3,112 chainNetMm10,112 netFr3,109 netMm10,109 cavanaugh est,749 intronEst,833 mrna,466 cb transMapEnsemblV5,794 transMapEstV5,763 transMapRefSeqV5,763 transMapRnaV5,763 transMapV5,869 cdna augustusGene,299 est,461 est,464 intronEst,542 intronEst,545 transMapEnsemblV5,391 transMapEnsemblV5,687 transMapEnsemblV5,770 transMapEstV5,360 transMapEstV5,656 transMapEstV5,739 transMapRefSeqV5,360 transMapRefSeqV5,656 transMapRefSeqV5,739 transMapRnaV5,360 transMapRnaV5,656 transMapRnaV5,739 transMapV5,15 transMapV5,466 transMapV5,762 transMapV5,845 cdnas transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 cell uniprot,563 cells est,456 intronEst,537 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainFr3,2 chainFr3,27 chainFr3,57 chainFr3,60 chainFr3,120 chainFr3,273 chainFr3,315 chainFr3,410 chainFr3,465 chainFr3,569 chainFr3,775 chainFr3,818 chainFr3,829 chainFr3,837 chainFr3,842 chainFr3,865 chainFr3,874 chainMm10,2 chainMm10,27 chainMm10,57 chainMm10,60 chainMm10,120 chainMm10,273 chainMm10,315 chainMm10,410 chainMm10,465 chainMm10,569 chainMm10,775 chainMm10,818 chainMm10,829 chainMm10,837 chainMm10,842 chainMm10,865 chainMm10,874 chainNetFr3,2 chainNetFr3,9 chainNetFr3,30 chainNetFr3,60 chainNetFr3,63 chainNetFr3,123 chainNetFr3,276 chainNetFr3,318 chainNetFr3,413 chainNetFr3,468 chainNetFr3,572 chainNetFr3,778 chainNetFr3,821 chainNetFr3,832 chainNetFr3,840 chainNetFr3,845 chainNetFr3,868 chainNetFr3,877 chainNetFr3Viewchain,1 chainNetFr3Viewchain,7 chainNetFr3Viewnet,7 chainNetMm10,2 chainNetMm10,9 chainNetMm10,30 chainNetMm10,60 chainNetMm10,63 chainNetMm10,123 chainNetMm10,276 chainNetMm10,318 chainNetMm10,413 chainNetMm10,468 chainNetMm10,572 chainNetMm10,778 chainNetMm10,821 chainNetMm10,832 chainNetMm10,840 chainNetMm10,845 chainNetMm10,868 chainNetMm10,877 chainNetMm10Viewchain,1 chainNetMm10Viewchain,7 chainNetMm10Viewnet,7 netFr3,27 netFr3,57 netFr3,60 netFr3,120 netFr3,273 netFr3,315 netFr3,410 netFr3,465 netFr3,569 netFr3,775 netFr3,818 netFr3,829 netFr3,837 netFr3,842 netFr3,865 netFr3,874 netMm10,27 netMm10,57 netMm10,60 netMm10,120 netMm10,273 netMm10,315 netMm10,410 netMm10,465 netMm10,569 netMm10,775 netMm10,818 netMm10,829 netMm10,837 netMm10,842 netMm10,865 netMm10,874 transMapV5,138 uniprot,290 chained chainFr3,8 chainMm10,8 chainnet chainFr3,792 chainFr3,997 chainMm10,792 chainMm10,997 chainNetFr3,795 chainNetFr3,1000 chainNetMm10,795 chainNetMm10,1000 netFr3,792 netFr3,997 netMm10,792 netMm10,997 chains chainFr3,196 chainFr3,208 chainFr3,219 chainFr3,320 chainFr3,359 chainFr3,392 chainFr3,397 chainFr3,419 chainFr3,431 chainFr3,438 chainFr3,495 chainFr3,665 chainFr3,680 chainFr3,694 chainFr3,763 chainFr3,784 chainFr3,799 chainFr3,859 chainFr3,890 chainFr3,985 chainMm10,196 chainMm10,208 chainMm10,219 chainMm10,320 chainMm10,359 chainMm10,392 chainMm10,397 chainMm10,419 chainMm10,431 chainMm10,438 chainMm10,495 chainMm10,665 chainMm10,680 chainMm10,694 chainMm10,763 chainMm10,784 chainMm10,799 chainMm10,859 chainMm10,890 chainMm10,985 chainNetFr3,199 chainNetFr3,211 chainNetFr3,222 chainNetFr3,323 chainNetFr3,362 chainNetFr3,395 chainNetFr3,400 chainNetFr3,422 chainNetFr3,434 chainNetFr3,441 chainNetFr3,498 chainNetFr3,668 chainNetFr3,683 chainNetFr3,697 chainNetFr3,766 chainNetFr3,787 chainNetFr3,802 chainNetFr3,862 chainNetFr3,893 chainNetFr3,988 chainNetMm10,199 chainNetMm10,211 chainNetMm10,222 chainNetMm10,323 chainNetMm10,362 chainNetMm10,395 chainNetMm10,400 chainNetMm10,422 chainNetMm10,434 chainNetMm10,441 chainNetMm10,498 chainNetMm10,668 chainNetMm10,683 chainNetMm10,697 chainNetMm10,766 chainNetMm10,787 chainNetMm10,802 chainNetMm10,862 chainNetMm10,893 chainNetMm10,988 netFr3,196 netFr3,208 netFr3,219 netFr3,320 netFr3,359 netFr3,392 netFr3,397 netFr3,419 netFr3,431 netFr3,438 netFr3,495 netFr3,665 netFr3,680 netFr3,694 netFr3,763 netFr3,784 netFr3,799 netFr3,859 netFr3,890 netFr3,985 netMm10,196 netMm10,208 netMm10,219 netMm10,320 netMm10,359 netMm10,392 netMm10,397 netMm10,419 netMm10,431 netMm10,438 netMm10,495 netMm10,665 netMm10,680 netMm10,694 netMm10,763 netMm10,784 netMm10,799 netMm10,859 netMm10,890 netMm10,985 transMapEnsemblV5,80 transMapEnsemblV5,198 transMapEnsemblV5,212 transMapEnsemblV5,258 transMapEnsemblV5,283 transMapEnsemblV5,331 transMapEnsemblV5,513 transMapEstV5,49 transMapEstV5,167 transMapEstV5,181 transMapEstV5,227 transMapEstV5,252 transMapEstV5,300 transMapEstV5,482 transMapRefSeqV5,49 transMapRefSeqV5,167 transMapRefSeqV5,181 transMapRefSeqV5,227 transMapRefSeqV5,252 transMapRefSeqV5,300 transMapRefSeqV5,482 transMapRnaV5,49 transMapRnaV5,167 transMapRnaV5,181 transMapRnaV5,227 transMapRnaV5,252 transMapRnaV5,300 transMapRnaV5,482 transMapV5,50 transMapV5,87 transMapV5,273 transMapV5,287 transMapV5,333 transMapV5,358 transMapV5,406 transMapV5,588 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 est,125 intronEst,206 mrna,71 changed rmsk,285 uniprot,1382 characteristic est,330 intronEst,411 mrna,276 check chainFr3,342 chainMm10,342 chainNetFr3,345 chainNetMm10,345 netFr3,342 netMm10,342 checkbox uniprot,231 chen ensGene,176 ensemblGeneScaffold,115 chiaromonte chainFr3,1030 chainMm10,1030 chainNetFr3,1033 chainNetMm10,1033 netFr3,1030 netMm10,1030 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 est,286 est,325 intronEst,367 intronEst,406 mrna,232 mrna,271 uniprot,657 chosen est,348 intronEst,429 mrna,294 chr4 chainFr3,374 chainMm10,374 chainNetFr3,377 chainNetMm10,377 netFr3,374 netMm10,374 chr6 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,159 chrom transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1819 chromosome chainFr3,249 chainFr3,329 chainFr3,354 chainFr3,362 chainFr3,372 chainFr3,381 chainFr3,528 chainFr3,543 chainFr3,559 chainFr3,628 chainFr3,634 chainMm10,249 chainMm10,329 chainMm10,354 chainMm10,362 chainMm10,372 chainMm10,381 chainMm10,528 chainMm10,543 chainMm10,559 chainMm10,628 chainMm10,634 chainNetFr3,252 chainNetFr3,332 chainNetFr3,357 chainNetFr3,365 chainNetFr3,375 chainNetFr3,384 chainNetFr3,531 chainNetFr3,546 chainNetFr3,562 chainNetFr3,631 chainNetFr3,637 chainNetMm10,252 chainNetMm10,332 chainNetMm10,357 chainNetMm10,365 chainNetMm10,375 chainNetMm10,384 chainNetMm10,531 chainNetMm10,546 chainNetMm10,562 chainNetMm10,631 chainNetMm10,637 cytoBandIdeo,1 netFr3,249 netFr3,329 netFr3,354 netFr3,362 netFr3,372 netFr3,381 netFr3,528 netFr3,543 netFr3,559 netFr3,628 netFr3,634 netMm10,249 netMm10,329 netMm10,354 netMm10,362 netMm10,372 netMm10,381 netMm10,528 netMm10,543 netMm10,559 netMm10,628 netMm10,634 ucscToINSDC,20 uniprot,1416 chromosome-based chainFr3,322 chainMm10,322 chainNetFr3,325 chainNetMm10,325 netFr3,322 netMm10,322 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 clark ensGene,178 ensemblGeneScaffold,117 est,751 intronEst,835 mrna,468 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 cleaved uniprot,249 click chainFr3,455 chainFr3,469 chainMm10,455 chainMm10,469 chainNetFr3,458 chainNetFr3,472 chainNetMm10,458 chainNetMm10,472 gc5BaseBw,56 netFr3,455 netFr3,469 netMm10,455 netMm10,469 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEstV5,105 transMapEstV5,119 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRnaV5,105 transMapRnaV5,119 transMapV5,211 transMapV5,225 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 clipped nestedRepeats,224 cloned est,466 intronEst,547 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 cm xenoRefGene,333 cod chainFr3,73 chainFr3,100 chainFr3,158 chainFr3,205 chainFr3,272 chainFr3,280 chainFr3,580 chainFr3,633 chainMm10,73 chainMm10,100 chainMm10,158 chainMm10,205 chainMm10,272 chainMm10,280 chainMm10,580 chainMm10,633 chainNetFr3,76 chainNetFr3,103 chainNetFr3,161 chainNetFr3,208 chainNetFr3,275 chainNetFr3,283 chainNetFr3,583 chainNetFr3,636 chainNetMm10,76 chainNetMm10,103 chainNetMm10,161 chainNetMm10,208 chainNetMm10,275 chainNetMm10,283 chainNetMm10,583 chainNetMm10,636 est,2 est,5 est,19 est,647 gap,18 gold,20 intronEst,4 intronEst,20 intronEst,127 intronEst,728 mrna,2 mrna,5 mrna,20 mrna,389 netFr3,73 netFr3,100 netFr3,158 netFr3,205 netFr3,272 netFr3,280 netFr3,580 netFr3,633 netMm10,73 netMm10,100 netMm10,158 netMm10,205 netMm10,272 netMm10,280 netMm10,580 netMm10,633 transMapEnsemblV5,91 transMapEnsemblV5,204 transMapEnsemblV5,335 transMapEstV5,60 transMapEstV5,173 transMapEstV5,304 transMapRefSeqV5,60 transMapRefSeqV5,173 transMapRefSeqV5,304 transMapRnaV5,60 transMapRnaV5,173 transMapRnaV5,304 transMapV5,61 transMapV5,279 transMapV5,410 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 code transMapEnsemblV5,624 transMapEnsemblV5,638 transMapEstV5,593 transMapEstV5,607 transMapRefSeqV5,593 transMapRefSeqV5,607 transMapRnaV5,593 transMapRnaV5,607 transMapV5,699 transMapV5,713 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 xenoRefGene,165 xenoRefGene,172 cognate transMapEnsemblV5,180 transMapEstV5,149 transMapRefSeqV5,149 transMapRnaV5,149 transMapV5,255 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collapsed nestedRepeats,173 collection xenoRefGene,33 color chainFr3,350 chainMm10,350 chainNetFr3,353 chainNetMm10,353 est,131 est,327 genscan,86 genscan,96 intronEst,212 intronEst,408 mrna,77 mrna,273 netFr3,350 netMm10,350 rmsk,207 xenoRefGene,58 xenoRefGene,169 coloration gold,94 colored chainFr3,325 chainMm10,325 chainNetFr3,328 chainNetMm10,328 est,434 intronEst,515 mrna,373 netFr3,325 netMm10,325 transMapEnsemblV5,146 transMapEstV5,115 transMapRefSeqV5,115 transMapRnaV5,115 transMapV5,221 uniprot,160 uniprot,176 coloring chainFr3,341 chainMm10,341 chainNetFr3,344 chainNetMm10,344 est,421 genscan,116 intronEst,502 mrna,333 mrna,360 netFr3,341 netMm10,341 transMapEnsemblV5,115 transMapEstV5,84 transMapRefSeqV5,84 transMapRnaV5,84 transMapV5,190 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 column nestedRepeats,107 columns transMapEnsemblV5,553 transMapEstV5,522 transMapRefSeqV5,522 transMapRnaV5,522 transMapV5,628 combination est,289 intronEst,370 mrna,235 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 transMapEnsemblV5,256 transMapEstV5,225 transMapRefSeqV5,225 transMapRnaV5,225 transMapV5,331 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainFr3,10 chainMm10,10 chainNetFr3,13 chainNetFr3Viewchain,11 chainNetFr3Viewnet,11 chainNetMm10,13 chainNetMm10Viewchain,11 chainNetMm10Viewnet,11 netFr3,10 netMm10,10 transMapEnsemblV5,744 transMapEnsemblV5,799 transMapEstV5,713 transMapEstV5,768 transMapRefSeqV5,713 transMapRefSeqV5,768 transMapRnaV5,713 transMapRnaV5,768 transMapV5,819 transMapV5,874 compare mrna,342 transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 xenoRefGene,155 compared transMapV5,154 comparison genscan,109 uniprot,1260 compiled transMapEnsemblV5,620 transMapEstV5,589 transMapRefSeqV5,589 transMapRnaV5,589 transMapV5,695 uniprot,1771 complete genscan,213 completely uniprot,1464 xenoRefGene,137 complex chainFr3,164 chainMm10,164 chainNetFr3,167 chainNetMm10,167 netFr3,164 netMm10,164 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,136 composed uniprot,1396 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,812 transMapEstV5,781 transMapRefSeqV5,781 transMapRnaV5,781 transMapV5,887 computational genscan,196 uniprot,51 computed transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 comstock transMapEnsemblV5,725 transMapEstV5,694 transMapRefSeqV5,694 transMapRnaV5,694 transMapV5,800 conditional augustusGene,118 configuration chainFr3,314 chainMm10,314 chainNetFr3,317 chainNetMm10,317 est,49 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 intronEst,133 mrna,30 nestedRepeats,114 netFr3,314 netMm10,314 rmsk,138 transMapEnsemblV5,95 transMapEstV5,64 transMapRefSeqV5,64 transMapRnaV5,64 transMapV5,170 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured est,383 gc5BaseBw,42 intronEst,464 mrna,329 transMapEnsemblV5,111 transMapEstV5,80 transMapRefSeqV5,80 transMapRnaV5,80 transMapV5,186 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,232 transMapEstV5,201 transMapRefSeqV5,201 transMapRnaV5,201 transMapV5,307 considerable est,640 intronEst,721 considered intronEst,59 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult est,220 intronEst,301 mrna,166 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainFr3,891 chainMm10,891 chainNetFr3,894 chainNetMm10,894 netFr3,891 netMm10,891 containing transMapEnsemblV5,548 transMapEstV5,517 transMapRefSeqV5,517 transMapRnaV5,517 transMapV5,623 contains est,245 gap,118 intronEst,326 mrna,191 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,142 contamination est,628 intronEst,99 intronEst,709 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig ensemblGeneScaffold,53 gold,82 contigs ensemblGeneScaffold,25 gap,85 gap,157 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 xenoRefGene,92 convenience uniprot,404 conventions chainFr3,312 chainMm10,312 chainNetFr3,315 chainNetMm10,315 est,47 est,55 genscan,62 genscan,70 intronEst,131 intronEst,139 mrna,28 mrna,36 nestedRepeats,112 netFr3,312 netMm10,312 rmsk,136 transMapEnsemblV5,93 transMapEnsemblV5,101 transMapEstV5,62 transMapEstV5,70 transMapRefSeqV5,62 transMapRefSeqV5,70 transMapRnaV5,62 transMapRnaV5,70 transMapV5,168 transMapV5,176 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted chainFr3,605 chainMm10,605 chainNetFr3,608 chainNetMm10,608 netFr3,605 netMm10,605 uniprot,1477 uniprot,1760 coordinates ensemblGeneScaffold,20 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponding transMapEnsemblV5,259 transMapEstV5,228 transMapRefSeqV5,228 transMapRnaV5,228 transMapV5,334 corresponds est,228 intronEst,309 mrna,174 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,143 gap,158 counts gold,143 cover est,561 intronEst,642 coverage uniprot,1485 covered chainFr3,814 chainMm10,814 chainNetFr3,817 chainNetMm10,817 gap,25 gold,27 netFr3,814 netMm10,814 cow transMapEnsemblV5,451 transMapEstV5,420 transMapRefSeqV5,420 transMapRnaV5,420 transMapV5,526 cox ensGene,180 ensemblGeneScaffold,119 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created chainFr3,989 chainMm10,989 chainNetFr3,992 chainNetMm10,992 ensemblGeneScaffold,67 microsat,89 netFr3,989 netMm10,989 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainFr3,639 chainMm10,639 chainNetFr3,642 chainNetMm10,642 netFr3,639 netMm10,639 credits augustusGene,247 chainFr3,915 chainMm10,915 chainNetFr3,918 chainNetMm10,918 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 ensemblGeneScaffold,98 est,725 gc5BaseBw,71 genscan,169 intronEst,809 microsat,104 mrna,441 nestedRepeats,302 netFr3,915 netMm10,915 rmsk,325 simpleRepeat,66 transMapEnsemblV5,676 transMapEstV5,645 transMapRefSeqV5,645 transMapRnaV5,645 transMapV5,751 ucscToINSDC,42 uniprot,1938 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 est,303 est,321 est,359 est,377 intronEst,384 intronEst,402 intronEst,440 intronEst,458 mrna,249 mrna,267 mrna,305 mrna,323 transMapEnsemblV5,359 transMapEstV5,328 transMapRefSeqV5,328 transMapRnaV5,328 transMapV5,434 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainFr3,965 chainFr3,1010 chainMm10,965 chainMm10,1010 chainNetFr3,968 chainNetFr3,1013 chainNetMm10,968 chainNetMm10,1013 netFr3,965 netFr3,1010 netMm10,965 netMm10,1010 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 ensemblGeneScaffold,121 culex augustusGene,220 curated uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current est,163 intronEst,244 mrna,109 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,79 curwen ensGene,184 ensemblGeneScaffold,123 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainFr3,1057 chainFr3,1101 chainMm10,1057 chainMm10,1101 chainNetFr3,1060 chainNetFr3,1104 chainNetMm10,1060 chainNetMm10,1104 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 ensemblGeneScaffold,110 genscan,192 netFr3,1057 netFr3,1101 netMm10,1057 netMm10,1101 transMapEnsemblV5,764 transMapEnsemblV5,798 transMapEstV5,733 transMapEstV5,767 transMapRefSeqV5,733 transMapRefSeqV5,767 transMapRnaV5,733 transMapRnaV5,767 transMapV5,839 transMapV5,873 d23-6 est,796 intronEst,880 mrna,513 d36-42 est,770 intronEst,854 mrna,487 d501-4 xenoRefGene,391 d71-5 uniprot,2005 d756-63 xenoRefGene,357 da est,748 est,776 intronEst,832 intronEst,860 mrna,465 mrna,493 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,148 darkly est,69 mrna,50 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 est,735 gap,97 gc5BaseBw,73 intronEst,819 microsat,47 mrna,452 nestedRepeats,263 nestedRepeats,280 rmsk,126 rmsk,287 transMapEnsemblV5,518 transMapEnsemblV5,522 transMapEnsemblV5,536 transMapEnsemblV5,573 transMapEnsemblV5,577 transMapEnsemblV5,691 transMapEstV5,487 transMapEstV5,491 transMapEstV5,505 transMapEstV5,542 transMapEstV5,546 transMapEstV5,660 transMapRefSeqV5,487 transMapRefSeqV5,491 transMapRefSeqV5,505 transMapRefSeqV5,542 transMapRefSeqV5,546 transMapRefSeqV5,660 transMapRnaV5,487 transMapRnaV5,491 transMapRnaV5,505 transMapRnaV5,542 transMapRnaV5,546 transMapRnaV5,660 transMapV5,593 transMapV5,597 transMapV5,611 transMapV5,648 transMapV5,652 transMapV5,766 ucscToINSDC,34 ucscToINSDC,44 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,290 database chainFr3,981 chainMm10,981 chainNetFr3,984 chainNetMm10,984 ensGene,193 ensemblGeneScaffold,132 est,768 est,794 intronEst,852 intronEst,878 mrna,485 mrna,511 nestedRepeats,345 netFr3,981 netMm10,981 rmsk,125 rmsk,368 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,241 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,615 est,742 intronEst,103 intronEst,696 intronEst,826 mrna,459 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 david chainFr3,975 chainMm10,975 chainNetFr3,978 chainNetMm10,978 netFr3,975 netMm10,975 davis transMapEnsemblV5,727 transMapEstV5,696 transMapRefSeqV5,696 transMapRnaV5,696 transMapV5,802 de augustusGene,303 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec chainMm10,4 chainMm10,66 chainMm10,306 chainNetMm10,5 chainNetMm10,69 chainNetMm10,309 chainNetMm10Viewchain,3 chainNetMm10Viewnet,3 nestedRepeats,389 nestedRepeats,411 netMm10,4 netMm10,66 netMm10,306 rmsk,412 rmsk,434 transMapEnsemblV5,749 transMapEnsemblV5,815 transMapEstV5,718 transMapEstV5,784 transMapRefSeqV5,718 transMapRefSeqV5,784 transMapRnaV5,718 transMapRnaV5,784 transMapV5,824 transMapV5,890 default chainFr3,318 chainMm10,318 chainNetFr3,321 chainNetMm10,321 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netFr3,318 netMm10,318 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 definition gap,40 gold,42 degraded est,530 intronEst,611 degree est,625 intronEst,706 deletion chainFr3,147 chainFr3,1062 chainMm10,147 chainMm10,1062 chainNetFr3,150 chainNetFr3,1065 chainNetMm10,150 chainNetMm10,1065 est,443 intronEst,524 mrna,382 netFr3,147 netFr3,1062 netMm10,147 netMm10,1062 rmsk,220 deletions chainFr3,115 chainFr3,179 chainMm10,115 chainMm10,179 chainNetFr3,118 chainNetFr3,182 chainNetMm10,118 chainNetMm10,182 netFr3,115 netFr3,179 netMm10,115 netMm10,179 delivered gap,52 gold,51 dense est,61 gold,68 intronEst,145 mrna,42 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,72 windowmaskerSdust,15 deposited est,602 intronEst,683 deprecated uniprot,1044 derived chainFr3,765 chainMm10,765 chainNetFr3,768 chainNetMm10,768 netFr3,765 netMm10,765 uniprot,830 described chainFr3,772 chainMm10,772 chainNetFr3,775 chainNetMm10,775 genscan,161 nestedRepeats,60 nestedRepeats,338 netFr3,772 netMm10,772 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,61 gold,60 description augustusGene,12 chainFr3,12 chainFr3,777 chainMm10,12 chainMm10,777 chainNetFr3,15 chainNetFr3,780 chainNetMm10,15 chainNetMm10,780 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 ensemblGeneScaffold,10 ensemblGeneScaffold,78 est,12 est,112 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,193 microsat,10 mrna,12 mrna,58 nestedRepeats,14 netFr3,12 netFr3,777 netMm10,12 netMm10,777 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,234 transMapEstV5,12 transMapEstV5,203 transMapRefSeqV5,13 transMapRefSeqV5,203 transMapRnaV5,13 transMapRnaV5,203 transMapV5,11 transMapV5,309 ucscToINSDC,13 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired est,288 intronEst,369 mrna,234 destination transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 destined uniprot,244 destuniq transMapEnsemblV5,436 transMapEstV5,405 transMapRefSeqV5,405 transMapRnaV5,405 transMapV5,511 detail genscan,164 detailed augustusGene,90 chainFr3,461 chainFr3,480 chainMm10,461 chainMm10,480 chainNetFr3,464 chainNetFr3,483 chainNetMm10,464 chainNetMm10,483 nestedRepeats,70 netFr3,461 netFr3,480 netMm10,461 netMm10,480 rmsk,37 uniprot,692 details rmsk,119 transMapEnsemblV5,236 transMapEstV5,205 transMapRefSeqV5,205 transMapRnaV5,205 transMapV5,311 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 determine transMapV5,91 determined windowmaskerSdust,19 determining chainFr3,485 chainMm10,485 chainNetFr3,488 chainNetMm10,488 netFr3,485 netMm10,485 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainFr3,922 chainFr3,957 chainFr3,1003 chainMm10,922 chainMm10,957 chainMm10,1003 chainNetFr3,925 chainNetFr3,960 chainNetFr3,1006 chainNetMm10,925 chainNetMm10,960 chainNetMm10,1006 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netFr3,922 netFr3,957 netFr3,1003 netMm10,922 netMm10,957 netMm10,1003 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 transMapEnsemblV5,683 transMapEnsemblV5,716 transMapEnsemblV5,759 transMapEnsemblV5,791 transMapEstV5,652 transMapEstV5,685 transMapEstV5,728 transMapEstV5,760 transMapRefSeqV5,652 transMapRefSeqV5,685 transMapRefSeqV5,728 transMapRefSeqV5,760 transMapRnaV5,652 transMapRnaV5,685 transMapRnaV5,728 transMapRnaV5,760 transMapV5,758 transMapV5,791 transMapV5,834 transMapV5,866 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,406 intronEst,487 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainFr3,560 chainMm10,560 chainNetFr3,563 chainNetMm10,563 ensGene,22 gc5BaseBw,50 genscan,54 netFr3,560 netMm10,560 rmsk,149 uniprot,634 difficult transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direction est,81 est,99 intronEst,162 intronEst,180 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 rmsk,134 discarded chainFr3,691 chainMm10,691 chainNetFr3,694 chainNetMm10,694 netFr3,691 netMm10,691 transMapEnsemblV5,383 transMapEstV5,352 transMapRefSeqV5,352 transMapRnaV5,352 transMapV5,458 xenoRefGene,238 discovery transMapEnsemblV5,738 transMapEstV5,707 transMapRefSeqV5,707 transMapRnaV5,707 transMapV5,813 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainFr3,241 chainFr3,311 chainFr3,356 chainFr3,386 chainFr3,445 chainFr3,474 chainFr3,503 chainFr3,979 chainMm10,241 chainMm10,311 chainMm10,356 chainMm10,386 chainMm10,445 chainMm10,474 chainMm10,503 chainMm10,979 chainNetFr3,244 chainNetFr3,314 chainNetFr3,359 chainNetFr3,389 chainNetFr3,448 chainNetFr3,477 chainNetFr3,506 chainNetFr3,982 chainNetMm10,244 chainNetMm10,314 chainNetMm10,359 chainNetMm10,389 chainNetMm10,448 chainNetMm10,477 chainNetMm10,506 chainNetMm10,982 est,46 est,54 est,62 est,127 est,154 est,184 est,329 est,353 est,369 est,385 est,395 est,444 genscan,61 genscan,69 genscan,104 gold,131 intronEst,118 intronEst,130 intronEst,138 intronEst,146 intronEst,208 intronEst,235 intronEst,265 intronEst,410 intronEst,434 intronEst,450 intronEst,466 intronEst,476 intronEst,525 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 nestedRepeats,111 netFr3,241 netFr3,311 netFr3,356 netFr3,386 netFr3,445 netFr3,474 netFr3,503 netFr3,979 netMm10,241 netMm10,311 netMm10,356 netMm10,386 netMm10,445 netMm10,474 netMm10,503 netMm10,979 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEnsemblV5,113 transMapEstV5,61 transMapEstV5,69 transMapEstV5,82 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRefSeqV5,82 transMapRnaV5,61 transMapRnaV5,69 transMapRnaV5,82 transMapV5,167 transMapV5,175 transMapV5,188 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainFr3,422 chainFr3,519 chainFr3,696 chainMm10,422 chainMm10,519 chainMm10,696 chainNetFr3,425 chainNetFr3,522 chainNetFr3,699 chainNetMm10,425 chainNetMm10,522 chainNetMm10,699 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 ensemblGeneScaffold,30 gc5BaseBw,54 intronEst,805 nestedRepeats,124 nestedRepeats,217 netFr3,422 netFr3,519 netFr3,696 netMm10,422 netMm10,519 netMm10,696 xenoRefGene,204 displays chainFr3,122 chainMm10,122 chainNetFr3,125 chainNetMm10,125 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netFr3,122 netMm10,122 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant est,585 intronEst,666 transMapEnsemblV5,270 transMapEstV5,239 transMapRefSeqV5,239 transMapRnaV5,239 transMapV5,64 transMapV5,345 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainFr3,914 chainMm10,914 chainNetFr3,917 chainNetMm10,917 nestedRepeats,212 netFr3,914 netMm10,914 transMapV5,152 divided uniprot,56 dj est,756 est,780 intronEst,840 intronEst,864 mrna,473 mrna,497 dl est,784 intronEst,868 mrna,501 dna chainFr3,1023 chainMm10,1023 chainNetFr3,1026 chainNetMm10,1026 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netFr3,1023 netMm10,1023 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 ensemblGeneScaffold,44 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 uniprot,168 uniprot,1129 doc rmsk,132 document gap,58 gold,57 documentation gap,30 gold,32 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainFr3,130 chainFr3,160 chainMm10,130 chainMm10,160 chainNetFr3,133 chainNetFr3,163 chainNetMm10,133 chainNetMm10,163 netFr3,130 netFr3,160 netMm10,130 netMm10,160 double-lined chainFr3,221 chainMm10,221 chainNetFr3,224 chainNetMm10,224 netFr3,221 netMm10,221 double-sided chainFr3,104 chainMm10,104 chainNetFr3,107 chainNetMm10,107 netFr3,104 netMm10,104 down ensGene,186 ensemblGeneScaffold,125 download ensGene,93 ensGene,143 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 uniprot,1744 uniprot,1983 downloaded transMapEnsemblV5,557 transMapEnsemblV5,626 transMapEstV5,526 transMapEstV5,595 transMapRefSeqV5,526 transMapRefSeqV5,595 transMapRnaV5,526 transMapRnaV5,595 transMapV5,632 transMapV5,701 ucscToINSDC,36 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,636 transMapEstV5,605 transMapRefSeqV5,605 transMapRnaV5,605 transMapV5,711 uniprot,1787 downloads ensGene,74 ensGene,85 rmsk,76 uniprot,1698 dr xenoRefGene,367 drastically intronEst,105 drawn gap,108 gold,127 draws uniprot,1532 drosophila augustusGene,213 due chainFr3,144 chainFr3,214 chainFr3,226 chainMm10,144 chainMm10,214 chainMm10,226 chainNetFr3,147 chainNetFr3,217 chainNetFr3,229 chainNetMm10,147 chainNetMm10,217 chainNetMm10,229 netFr3,144 netFr3,214 netFr3,226 netMm10,144 netMm10,214 netMm10,226 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainFr3,1061 chainMm10,1061 chainNetFr3,1064 chainNetMm10,1064 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netFr3,1061 netMm10,1061 duplications transMapEnsemblV5,312 transMapEnsemblV5,510 transMapEstV5,281 transMapEstV5,479 transMapRefSeqV5,281 transMapRefSeqV5,479 transMapRnaV5,281 transMapRnaV5,479 transMapV5,387 transMapV5,585 during chainFr3,819 chainMm10,819 chainNetFr3,822 chainNetMm10,822 netFr3,819 netMm10,819 dynamic chainFr3,652 chainMm10,652 chainNetFr3,655 chainNetMm10,655 netFr3,652 netMm10,652 e ensGene,173 ensemblGeneScaffold,112 uniprot,2021 e.g chainFr3,373 chainMm10,373 chainNetFr3,376 chainNetMm10,376 netFr3,373 netMm10,373 uniprot,398 uniprot,467 e247 transMapEnsemblV5,818 transMapEstV5,787 transMapRefSeqV5,787 transMapRnaV5,787 transMapV5,893 each chainFr3,259 chainMm10,259 chainNetFr3,262 chainNetMm10,262 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 est,217 genscan,99 intronEst,298 mrna,163 nestedRepeats,120 netFr3,259 netMm10,259 transMapEnsemblV5,389 transMapEnsemblV5,403 transMapEnsemblV5,412 transMapEnsemblV5,431 transMapEstV5,358 transMapEstV5,372 transMapEstV5,381 transMapEstV5,400 transMapRefSeqV5,358 transMapRefSeqV5,372 transMapRefSeqV5,381 transMapRefSeqV5,400 transMapRnaV5,358 transMapRnaV5,372 transMapRnaV5,381 transMapRnaV5,400 transMapV5,464 transMapV5,478 transMapV5,487 transMapV5,506 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,600 intronEst,681 either chainFr3,127 chainMm10,127 chainNetFr3,130 chainNetMm10,130 gap,87 netFr3,127 netMm10,127 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 eliminate est,673 intronEst,754 eliminating intronEst,111 elsevier genscan,202 em windowmaskerSdust,93 emerged chainFr3,825 chainMm10,825 chainNetFr3,828 chainNetMm10,828 est,570 intronEst,651 netFr3,825 netMm10,825 end est,520 est,538 est,548 est,589 intronEst,601 intronEst,619 intronEst,629 intronEst,670 rmsk,245 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,92 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 ensemblGeneScaffold,1 ensemblGeneScaffold,3 ensemblGeneScaffold,17 ensemblGeneScaffold,62 ensemblGeneScaffold,70 ensemblGeneScaffold,84 ensemblGeneScaffold,101 ensemblGeneScaffold,130 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,592 transMapEnsemblV5,708 transMapEstV5,561 transMapEstV5,677 transMapRefSeqV5,561 transMapRefSeqV5,677 transMapRnaV5,561 transMapRnaV5,677 transMapV5,667 transMapV5,783 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,385 transMapEstV5,354 transMapRefSeqV5,354 transMapRnaV5,354 transMapV5,460 enter chainFr3,367 chainMm10,367 chainNetFr3,370 chainNetMm10,370 netFr3,367 netMm10,367 entered est,254 est,264 intronEst,335 intronEst,345 mrna,200 mrna,210 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 ermolaeva xenoRefGene,330 especially est,155 intronEst,236 mrna,101 est est,11 est,87 est,183 est,451 est,614 est,635 est,687 est,733 intronEst,12 intronEst,62 intronEst,77 intronEst,102 intronEst,128 intronEst,168 intronEst,264 intronEst,532 intronEst,695 intronEst,716 intronEst,768 intronEst,817 mrna,11 transMapEnsemblV5,689 transMapEstV5,4 transMapEstV5,18 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 ests est,3 est,6 est,23 est,29 est,193 est,298 est,313 est,354 est,372 est,490 est,535 est,546 est,648 est,675 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,115 intronEst,121 intronEst,156 intronEst,274 intronEst,379 intronEst,394 intronEst,435 intronEst,453 intronEst,571 intronEst,616 intronEst,627 intronEst,729 intronEst,756 transMapEnsemblV5,177 transMapEnsemblV5,601 transMapEstV5,2 transMapEstV5,146 transMapEstV5,570 transMapRefSeqV5,146 transMapRefSeqV5,570 transMapRnaV5,146 transMapRnaV5,570 transMapV5,252 transMapV5,676 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 ensemblGeneScaffold,90 ensemblGeneScaffold,127 transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even est,609 est,616 intronEst,690 intronEst,697 uniprot,136 every chainFr3,275 chainMm10,275 chainNetFr3,278 chainNetMm10,278 netFr3,275 netMm10,275 uniprot,1571 evidence intronEst,65 evolution chainFr3,1058 chainMm10,1058 chainNetFr3,1061 chainNetMm10,1061 netFr3,1058 netMm10,1058 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew est,760 intronEst,844 mrna,477 ewing transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 exact uniprot,1622 uniprot,1747 example est,186 est,239 intronEst,267 intronEst,320 mrna,132 mrna,185 rmsk,256 transMapEnsemblV5,448 transMapEnsemblV5,660 transMapEstV5,417 transMapEstV5,629 transMapRefSeqV5,417 transMapRefSeqV5,629 transMapRnaV5,417 transMapRnaV5,629 transMapV5,97 transMapV5,523 transMapV5,735 uniprot,1450 uniprot,1811 uniprot,1901 except uniprot,508 exclude est,134 est,339 est,345 intronEst,215 intronEst,420 intronEst,426 mrna,80 mrna,285 mrna,291 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exist chainFr3,406 chainMm10,406 chainNetFr3,409 chainNetMm10,409 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 netFr3,406 netMm10,406 exon augustusGene,86 exons chainFr3,48 chainMm10,48 chainNetFr3,51 chainNetMm10,51 genscan,44 netFr3,48 netMm10,48 transMapEnsemblV5,742 transMapEstV5,711 transMapRefSeqV5,711 transMapRnaV5,711 transMapV5,817 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense intronEst,109 transMapEnsemblV5,297 transMapEstV5,266 transMapRefSeqV5,266 transMapRnaV5,266 transMapV5,372 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,275 mrna,140 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,552 transMapEstV5,521 transMapRefSeqV5,521 transMapRnaV5,521 transMapV5,627 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extracted nestedRepeats,23 f chainFr3,1031 chainMm10,1031 chainNetFr3,1034 chainNetMm10,1034 gold,155 netFr3,1031 netMm10,1031 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor est,231 intronEst,312 mrna,177 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 rmsk,321 transMapEnsemblV5,579 transMapEstV5,548 transMapRefSeqV5,548 transMapRnaV5,548 transMapV5,654 uniprot,1839 far uniprot,599 farrell xenoRefGene,332 feature chainFr3,245 chainMm10,245 chainNetFr3,248 chainNetMm10,248 est,389 genscan,129 intronEst,470 mrna,335 netFr3,245 netMm10,245 transMapEnsemblV5,117 transMapEstV5,86 transMapRefSeqV5,86 transMapRnaV5,86 transMapV5,192 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,180 features transMapEnsemblV5,654 transMapEstV5,623 transMapRefSeqV5,623 transMapRnaV5,623 transMapV5,729 uniprot,694 uniprot,1805 xenoRefGene,83 fed chainFr3,617 chainMm10,617 chainNetFr3,620 chainNetMm10,620 netFr3,617 netMm10,617 feedback uniprot,1445 uniprot,1961 fewer transMapV5,160 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,51 gap,67 gap,142 gold,50 gold,66 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 transMapEnsemblV5,547 transMapEnsemblV5,581 transMapEstV5,516 transMapEstV5,550 transMapRefSeqV5,516 transMapRefSeqV5,550 transMapRnaV5,516 transMapRnaV5,550 transMapV5,622 transMapV5,656 uniprot,1863 fill chainFr3,849 chainFr3,882 chainMm10,849 chainMm10,882 chainNetFr3,852 chainNetFr3,885 chainNetMm10,852 chainNetMm10,885 netFr3,849 netFr3,882 netMm10,849 netMm10,882 filled chainFr3,415 chainFr3,434 chainFr3,831 chainFr3,904 chainMm10,415 chainMm10,434 chainMm10,831 chainMm10,904 chainNetFr3,418 chainNetFr3,437 chainNetFr3,834 chainNetFr3,907 chainNetMm10,418 chainNetMm10,437 chainNetMm10,834 chainNetMm10,907 netFr3,415 netFr3,434 netFr3,831 netFr3,904 netMm10,415 netMm10,434 netMm10,831 netMm10,904 filter chainFr3,379 chainMm10,379 chainNetFr3,382 chainNetMm10,382 est,119 est,168 est,181 est,190 est,237 est,278 est,302 est,320 est,358 est,376 genscan,82 intronEst,200 intronEst,249 intronEst,262 intronEst,271 intronEst,318 intronEst,359 intronEst,383 intronEst,401 intronEst,439 intronEst,457 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 netFr3,379 netMm10,379 uniprot,187 uniprot,664 filtered est,341 intronEst,422 mrna,287 transMapEnsemblV5,77 transMapEnsemblV5,352 transMapEstV5,46 transMapEstV5,321 transMapRefSeqV5,46 transMapRefSeqV5,321 transMapRnaV5,46 transMapRnaV5,321 transMapV5,45 transMapV5,427 uniprot,1480 uniprot,1499 filtering est,280 intronEst,361 mrna,226 transMapEnsemblV5,238 transMapEnsemblV5,306 transMapEstV5,207 transMapEstV5,275 transMapRefSeqV5,207 transMapRefSeqV5,275 transMapRnaV5,207 transMapRnaV5,275 transMapV5,313 transMapV5,381 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainFr3,661 chainMm10,661 chainNetFr3,664 chainNetMm10,664 netFr3,661 netMm10,661 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainFr3,286 chainMm10,286 chainNetFr3,289 chainNetMm10,289 netFr3,286 netMm10,286 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 finds transMapV5,159 finger uniprot,327 finished gold,157 transMapEnsemblV5,363 transMapEstV5,332 transMapRefSeqV5,332 transMapRnaV5,332 transMapV5,438 first chainFr3,789 chainMm10,789 chainNetFr3,792 chainNetMm10,792 netFr3,789 netMm10,789 uniprot,70 fish augustusGene,201 fit chainFr3,809 chainMm10,809 chainNetFr3,812 chainNetMm10,812 nestedRepeats,175 netFr3,809 netMm10,809 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainFr3,670 chainMm10,670 chainNetFr3,673 chainNetMm10,673 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,120 genscan,81 netFr3,670 netMm10,670 transMapEnsemblV5,589 transMapEstV5,558 transMapRefSeqV5,558 transMapRnaV5,558 transMapV5,664 windowmaskerSdust,56 follows est,52 genscan,67 intronEst,136 mrna,33 transMapEnsemblV5,98 transMapEnsemblV5,216 transMapEstV5,67 transMapEstV5,185 transMapRefSeqV5,67 transMapRefSeqV5,185 transMapRnaV5,67 transMapRnaV5,185 transMapV5,173 transMapV5,291 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainFr3,258 chainFr3,274 chainFr3,285 chainFr3,292 chainFr3,492 chainMm10,258 chainMm10,274 chainMm10,285 chainMm10,292 chainMm10,492 chainNetFr3,261 chainNetFr3,277 chainNetFr3,288 chainNetFr3,295 chainNetFr3,495 chainNetMm10,261 chainNetMm10,277 chainNetMm10,288 chainNetMm10,295 chainNetMm10,495 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 ensemblGeneScaffold,76 ensemblGeneScaffold,102 est,56 est,114 est,185 est,216 est,238 est,411 est,422 est,435 est,483 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,116 intronEst,140 intronEst,195 intronEst,266 intronEst,297 intronEst,319 intronEst,492 intronEst,503 intronEst,516 intronEst,564 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netFr3,258 netFr3,274 netFr3,285 netFr3,292 netFr3,492 netMm10,258 netMm10,274 netMm10,285 netMm10,292 netMm10,492 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,102 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,190 transMapEnsemblV5,217 transMapEnsemblV5,235 transMapEnsemblV5,266 transMapEnsemblV5,268 transMapEnsemblV5,286 transMapEnsemblV5,290 transMapEnsemblV5,388 transMapEnsemblV5,402 transMapEnsemblV5,411 transMapEnsemblV5,447 transMapEnsemblV5,523 transMapEnsemblV5,538 transMapEnsemblV5,567 transMapEnsemblV5,631 transMapEnsemblV5,635 transMapEnsemblV5,659 transMapEnsemblV5,802 transMapEstV5,36 transMapEstV5,71 transMapEstV5,99 transMapEstV5,116 transMapEstV5,159 transMapEstV5,186 transMapEstV5,204 transMapEstV5,235 transMapEstV5,237 transMapEstV5,255 transMapEstV5,259 transMapEstV5,357 transMapEstV5,371 transMapEstV5,380 transMapEstV5,416 transMapEstV5,492 transMapEstV5,507 transMapEstV5,536 transMapEstV5,600 transMapEstV5,604 transMapEstV5,628 transMapEstV5,771 transMapRefSeqV5,36 transMapRefSeqV5,71 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,159 transMapRefSeqV5,186 transMapRefSeqV5,204 transMapRefSeqV5,235 transMapRefSeqV5,237 transMapRefSeqV5,255 transMapRefSeqV5,259 transMapRefSeqV5,357 transMapRefSeqV5,371 transMapRefSeqV5,380 transMapRefSeqV5,416 transMapRefSeqV5,492 transMapRefSeqV5,507 transMapRefSeqV5,536 transMapRefSeqV5,600 transMapRefSeqV5,604 transMapRefSeqV5,628 transMapRefSeqV5,771 transMapRnaV5,36 transMapRnaV5,71 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,159 transMapRnaV5,186 transMapRnaV5,204 transMapRnaV5,235 transMapRnaV5,237 transMapRnaV5,255 transMapRnaV5,259 transMapRnaV5,357 transMapRnaV5,371 transMapRnaV5,380 transMapRnaV5,416 transMapRnaV5,492 transMapRnaV5,507 transMapRnaV5,536 transMapRnaV5,600 transMapRnaV5,604 transMapRnaV5,628 transMapRnaV5,771 transMapV5,35 transMapV5,62 transMapV5,96 transMapV5,98 transMapV5,151 transMapV5,177 transMapV5,205 transMapV5,222 transMapV5,265 transMapV5,292 transMapV5,310 transMapV5,341 transMapV5,343 transMapV5,361 transMapV5,365 transMapV5,463 transMapV5,477 transMapV5,486 transMapV5,522 transMapV5,598 transMapV5,613 transMapV5,642 transMapV5,706 transMapV5,710 transMapV5,734 transMapV5,877 ucscToINSDC,45 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainFr3,608 chainMm10,608 chainNetFr3,611 chainNetMm10,611 ensGene,77 ensGene,97 gap,63 gold,62 netFr3,608 netMm10,608 transMapEnsemblV5,420 transMapEstV5,389 transMapRefSeqV5,389 transMapRnaV5,389 transMapV5,495 formats uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainFr3,441 chainMm10,441 chainNetFr3,444 chainNetMm10,444 netFr3,441 netMm10,441 found augustusGene,100 ensGene,139 gold,138 mrna,416 transMapEnsemblV5,643 transMapEstV5,612 transMapRefSeqV5,612 transMapRnaV5,612 transMapV5,718 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainFr3,509 chainMm10,509 chainNetFr3,512 chainNetMm10,512 netFr3,509 netMm10,509 fr3 chainFr3,7 chainFr3,69 chainFr3,309 chainNetFr3,8 chainNetFr3,72 chainNetFr3,312 chainNetFr3Viewchain,6 chainNetFr3Viewnet,6 netFr3,7 netFr3,69 netFr3,309 fragment gap,151 fragments est,42 gold,4 intronEst,53 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from augustusGene,19 chainFr3,176 chainFr3,304 chainFr3,561 chainFr3,584 chainFr3,766 chainFr3,939 chainFr3,971 chainMm10,176 chainMm10,304 chainMm10,561 chainMm10,584 chainMm10,766 chainMm10,939 chainMm10,971 chainNetFr3,179 chainNetFr3,307 chainNetFr3,564 chainNetFr3,587 chainNetFr3,769 chainNetFr3,942 chainNetFr3,974 chainNetMm10,179 chainNetMm10,307 chainNetMm10,564 chainNetMm10,587 chainNetMm10,769 chainNetMm10,942 chainNetMm10,974 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 ensemblGeneScaffold,68 est,407 est,455 est,476 est,586 est,604 est,649 est,732 gap,48 genscan,15 gold,3 gold,47 intronEst,488 intronEst,536 intronEst,557 intronEst,667 intronEst,685 intronEst,730 intronEst,816 mrna,7 mrna,449 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netFr3,176 netFr3,304 netFr3,561 netFr3,584 netFr3,766 netFr3,939 netFr3,971 netMm10,176 netMm10,304 netMm10,561 netMm10,584 netMm10,766 netMm10,939 netMm10,971 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,158 transMapEnsemblV5,558 transMapEnsemblV5,621 transMapEnsemblV5,686 transMapEstV5,27 transMapEstV5,127 transMapEstV5,527 transMapEstV5,590 transMapEstV5,655 transMapRefSeqV5,27 transMapRefSeqV5,127 transMapRefSeqV5,527 transMapRefSeqV5,590 transMapRefSeqV5,655 transMapRnaV5,27 transMapRnaV5,127 transMapRnaV5,527 transMapRnaV5,590 transMapRnaV5,655 transMapV5,26 transMapV5,112 transMapV5,233 transMapV5,633 transMapV5,696 transMapV5,761 ucscToINSDC,25 ucscToINSDC,37 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 fugu chainFr3,1 chainFr3,3 chainFr3,65 chainFr3,97 chainFr3,150 chainFr3,270 chainFr3,297 chainFr3,578 chainFr3,627 chainNetFr3,1 chainNetFr3,4 chainNetFr3,68 chainNetFr3,100 chainNetFr3,153 chainNetFr3,273 chainNetFr3,300 chainNetFr3,581 chainNetFr3,630 chainNetFr3Viewchain,2 chainNetFr3Viewnet,2 netFr3,1 netFr3,3 netFr3,65 netFr3,97 netFr3,150 netFr3,270 netFr3,297 netFr3,578 netFr3,627 fugu5 chainFr3,6 chainFr3,68 chainFr3,308 chainNetFr3,7 chainNetFr3,71 chainNetFr3,311 chainNetFr3Viewchain,5 chainNetFr3Viewnet,5 netFr3,6 netFr3,68 netFr3,308 full chainFr3,239 chainFr3,385 chainMm10,239 chainMm10,385 chainNetFr3,242 chainNetFr3,388 chainNetMm10,242 chainNetMm10,388 nestedRepeats,118 netFr3,239 netFr3,385 netMm10,239 netMm10,385 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,280 transMapEstV5,249 transMapRefSeqV5,249 transMapRnaV5,249 transMapV5,355 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 ensemblGeneScaffold,114 gc5BaseBw,20 microsat,115 simpleRepeat,75 g-25-100100-90 chainFr3,678 chainMm10,678 chainNetFr3,681 chainNetMm10,681 netFr3,678 netMm10,678 gadmor1 ensGene,80 transMapEnsemblV5,205 transMapEnsemblV5,665 transMapEstV5,174 transMapEstV5,634 transMapRefSeqV5,174 transMapRefSeqV5,634 transMapRnaV5,174 transMapRnaV5,634 transMapV5,280 transMapV5,740 uniprot,1816 gadmor1.ensembl.transmapv4.bigpsl transMapEnsemblV5,593 transMapEstV5,562 transMapRefSeqV5,562 transMapRnaV5,562 gadmor1.ensembl.transmapv5.bigpsl transMapV5,668 gadmor1.est.transmapv4.bigpsl transMapEnsemblV5,602 transMapEstV5,571 transMapRefSeqV5,571 transMapRnaV5,571 gadmor1.est.transmapv5.bigpsl transMapV5,677 gadmor1.fa windowmaskerSdust,62 windowmaskerSdust,71 gadmor1.refseq.transmapv4.bigpsl transMapEnsemblV5,596 transMapEnsemblV5,668 transMapEstV5,565 transMapEstV5,637 transMapRefSeqV5,565 transMapRefSeqV5,637 transMapRnaV5,565 transMapRnaV5,637 gadmor1.refseq.transmapv5.bigpsl transMapV5,671 transMapV5,743 gadmor1.rna.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 gadmor1.rna.transmapv5.bigpsl transMapV5,674 gambiae augustusGene,219 gap chainFr3,77 chainFr3,87 chainFr3,188 chainFr3,478 chainFr3,490 chainFr3,513 chainFr3,531 chainFr3,546 chainFr3,563 chainFr3,702 chainFr3,833 chainMm10,77 chainMm10,87 chainMm10,188 chainMm10,478 chainMm10,490 chainMm10,513 chainMm10,531 chainMm10,546 chainMm10,563 chainMm10,702 chainMm10,833 chainNetFr3,80 chainNetFr3,90 chainNetFr3,191 chainNetFr3,481 chainNetFr3,493 chainNetFr3,516 chainNetFr3,534 chainNetFr3,549 chainNetFr3,566 chainNetFr3,705 chainNetFr3,836 chainNetMm10,80 chainNetMm10,90 chainNetMm10,191 chainNetMm10,481 chainNetMm10,493 chainNetMm10,516 chainNetMm10,534 chainNetMm10,549 chainNetMm10,566 chainNetMm10,705 chainNetMm10,836 est,430 gap,1 gap,2 gap,91 gap,102 gap,115 intronEst,511 mrna,369 netFr3,77 netFr3,87 netFr3,188 netFr3,478 netFr3,490 netFr3,513 netFr3,531 netFr3,546 netFr3,563 netFr3,702 netFr3,833 netMm10,77 netMm10,87 netMm10,188 netMm10,478 netMm10,490 netMm10,513 netMm10,531 netMm10,546 netMm10,563 netMm10,702 netMm10,833 transMapEnsemblV5,142 transMapEstV5,111 transMapRefSeqV5,111 transMapRnaV5,111 transMapV5,217 gapless chainFr3,645 chainMm10,645 chainNetFr3,648 chainNetMm10,648 netFr3,645 netMm10,645 gaps chainFr3,83 chainFr3,94 chainFr3,106 chainFr3,140 chainFr3,165 chainFr3,211 chainFr3,222 chainFr3,405 chainFr3,427 chainFr3,454 chainFr3,888 chainFr3,894 chainMm10,83 chainMm10,94 chainMm10,106 chainMm10,140 chainMm10,165 chainMm10,211 chainMm10,222 chainMm10,405 chainMm10,427 chainMm10,454 chainMm10,888 chainMm10,894 chainNetFr3,86 chainNetFr3,97 chainNetFr3,109 chainNetFr3,143 chainNetFr3,168 chainNetFr3,214 chainNetFr3,225 chainNetFr3,408 chainNetFr3,430 chainNetFr3,457 chainNetFr3,891 chainNetFr3,897 chainNetMm10,86 chainNetMm10,97 chainNetMm10,109 chainNetMm10,143 chainNetMm10,168 chainNetMm10,214 chainNetMm10,225 chainNetMm10,408 chainNetMm10,430 chainNetMm10,457 chainNetMm10,891 chainNetMm10,897 gap,12 gap,43 gap,68 gap,124 gap,126 gap,152 gold,96 netFr3,83 netFr3,94 netFr3,106 netFr3,140 netFr3,165 netFr3,211 netFr3,222 netFr3,405 netFr3,427 netFr3,454 netFr3,888 netFr3,894 netMm10,83 netMm10,94 netMm10,106 netMm10,140 netMm10,165 netMm10,211 netMm10,222 netMm10,405 netMm10,427 netMm10,454 netMm10,888 netMm10,894 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 transMapV5,739 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank est,25 est,650 est,761 est,785 intronEst,26 intronEst,731 intronEst,845 intronEst,869 mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 transMapEnsemblV5,172 transMapEnsemblV5,175 transMapEstV5,16 transMapEstV5,141 transMapEstV5,144 transMapRefSeqV5,141 transMapRefSeqV5,144 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,141 transMapRnaV5,144 transMapV5,247 transMapV5,250 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 ensemblGeneScaffold,4 ensemblGeneScaffold,18 ensemblGeneScaffold,41 ensemblGeneScaffold,57 ensemblGeneScaffold,85 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,393 transMapEnsemblV5,776 transMapEstV5,10 transMapEstV5,362 transMapEstV5,745 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,362 transMapRefSeqV5,745 transMapRnaV5,11 transMapRnaV5,362 transMapRnaV5,745 transMapV5,9 transMapV5,17 transMapV5,468 transMapV5,851 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 general est,532 intronEst,613 generally rmsk,72 uniprot,248 generate est,643 intronEst,724 nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 ensemblGeneScaffold,60 nestedRepeats,282 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 est,45 genscan,2 genscan,6 genscan,59 intronEst,56 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,171 transMapEnsemblV5,185 transMapEnsemblV5,292 transMapEnsemblV5,806 transMapEstV5,8 transMapEstV5,57 transMapEstV5,140 transMapEstV5,154 transMapEstV5,261 transMapEstV5,775 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,140 transMapRefSeqV5,154 transMapRefSeqV5,261 transMapRefSeqV5,775 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,140 transMapRnaV5,154 transMapRnaV5,261 transMapRnaV5,775 transMapV5,7 transMapV5,58 transMapV5,73 transMapV5,246 transMapV5,260 transMapV5,367 transMapV5,881 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainFr3,19 chainFr3,74 chainFr3,206 chainFr3,281 chainFr3,294 chainFr3,787 chainFr3,1108 chainMm10,19 chainMm10,74 chainMm10,206 chainMm10,281 chainMm10,294 chainMm10,787 chainMm10,1108 chainNetFr3,22 chainNetFr3,77 chainNetFr3,209 chainNetFr3,284 chainNetFr3,297 chainNetFr3,790 chainNetFr3,1111 chainNetMm10,22 chainNetMm10,77 chainNetMm10,209 chainNetMm10,284 chainNetMm10,297 chainNetMm10,790 chainNetMm10,1111 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 ensemblGeneScaffold,131 est,28 est,655 est,808 gap,19 gap,21 gap,155 gold,21 gold,23 gold,151 intronEst,29 intronEst,39 intronEst,736 intronEst,892 mrna,26 mrna,395 mrna,525 nestedRepeats,405 netFr3,19 netFr3,74 netFr3,206 netFr3,281 netFr3,294 netFr3,787 netFr3,1108 netMm10,19 netMm10,74 netMm10,206 netMm10,281 netMm10,294 netMm10,787 netMm10,1108 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,164 transMapEnsemblV5,181 transMapEnsemblV5,206 transMapEnsemblV5,336 transMapEnsemblV5,347 transMapEnsemblV5,408 transMapEnsemblV5,418 transMapEnsemblV5,452 transMapEnsemblV5,475 transMapEnsemblV5,608 transMapEnsemblV5,746 transMapEstV5,34 transMapEstV5,133 transMapEstV5,150 transMapEstV5,175 transMapEstV5,305 transMapEstV5,316 transMapEstV5,377 transMapEstV5,387 transMapEstV5,421 transMapEstV5,444 transMapEstV5,577 transMapEstV5,715 transMapRefSeqV5,34 transMapRefSeqV5,133 transMapRefSeqV5,150 transMapRefSeqV5,175 transMapRefSeqV5,305 transMapRefSeqV5,316 transMapRefSeqV5,377 transMapRefSeqV5,387 transMapRefSeqV5,421 transMapRefSeqV5,444 transMapRefSeqV5,577 transMapRefSeqV5,715 transMapRnaV5,34 transMapRnaV5,133 transMapRnaV5,150 transMapRnaV5,175 transMapRnaV5,305 transMapRnaV5,316 transMapRnaV5,377 transMapRnaV5,387 transMapRnaV5,421 transMapRnaV5,444 transMapRnaV5,577 transMapRnaV5,715 transMapV5,33 transMapV5,85 transMapV5,239 transMapV5,256 transMapV5,281 transMapV5,411 transMapV5,422 transMapV5,483 transMapV5,493 transMapV5,527 transMapV5,550 transMapV5,683 transMapV5,821 ucscToINSDC,18 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes chainFr3,25 chainFr3,589 chainFr3,1070 chainMm10,25 chainMm10,589 chainMm10,1070 chainNetFr3,28 chainNetFr3,592 chainNetFr3,1073 chainNetMm10,28 chainNetMm10,592 chainNetMm10,1073 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netFr3,25 netFr3,589 netFr3,1070 netMm10,25 netMm10,589 netMm10,1070 rmsk,392 rmsk,406 transMapEnsemblV5,364 transMapEnsemblV5,372 transMapEstV5,333 transMapEstV5,341 transMapRefSeqV5,333 transMapRefSeqV5,341 transMapRnaV5,333 transMapRnaV5,341 transMapV5,439 transMapV5,447 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic chainFr3,497 chainFr3,1022 chainFr3,1038 chainMm10,497 chainMm10,1022 chainMm10,1038 chainNetFr3,500 chainNetFr3,1025 chainNetFr3,1041 chainNetMm10,500 chainNetMm10,1025 chainNetMm10,1041 est,91 est,409 est,610 est,721 genscan,92 genscan,218 intronEst,74 intronEst,172 intronEst,490 intronEst,691 intronEst,802 mrna,346 mrna,437 netFr3,497 netFr3,1022 netFr3,1038 netMm10,497 netMm10,1022 netMm10,1038 transMapEnsemblV5,128 transMapEstV5,97 transMapRefSeqV5,97 transMapRnaV5,97 transMapV5,203 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,164 xenoRefGene,276 genomics chainFr3,11 chainMm10,11 chainNetFr3,14 chainNetFr3Viewchain,12 chainNetFr3Viewnet,12 chainNetMm10,14 chainNetMm10Viewchain,12 chainNetMm10Viewnet,12 netFr3,11 netMm10,11 transMapEnsemblV5,745 transMapEnsemblV5,800 transMapEstV5,714 transMapEstV5,769 transMapRefSeqV5,714 transMapRefSeqV5,769 transMapRnaV5,714 transMapRnaV5,769 transMapV5,820 transMapV5,875 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,113 gertz windowmaskerSdust,92 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 give transMapEnsemblV5,440 transMapEstV5,409 transMapRefSeqV5,409 transMapRnaV5,409 transMapV5,515 given transMapEnsemblV5,484 transMapEnsemblV5,657 transMapEstV5,453 transMapEstV5,626 transMapRefSeqV5,453 transMapRefSeqV5,626 transMapRnaV5,453 transMapRnaV5,626 transMapV5,559 transMapV5,732 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,357 transMapEstV5,326 transMapRefSeqV5,326 transMapRnaV5,326 transMapV5,432 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go est,417 est,438 genscan,113 intronEst,498 intronEst,519 mrna,354 mrna,377 uniprot,1412 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainFr3,444 chainMm10,444 chainNetFr3,447 chainNetMm10,447 gold,130 netFr3,444 netMm10,444 rmsk,211 gray ensemblGeneScaffold,34 ensemblGeneScaffold,35 grcm38 chainMm10,6 chainMm10,68 chainMm10,308 chainNetMm10,7 chainNetMm10,71 chainNetMm10,311 chainNetMm10Viewchain,5 chainNetMm10Viewnet,5 netMm10,6 netMm10,68 netMm10,308 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainFr3,637 chainMm10,637 chainNetFr3,640 chainNetMm10,640 netFr3,637 netMm10,637 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 intronEst,90 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,195 transMapEstV5,164 transMapRefSeqV5,164 transMapRnaV5,164 transMapV5,270 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainFr3,941 chainFr3,1098 chainMm10,941 chainMm10,1098 chainNetFr3,944 chainNetFr3,1101 chainNetMm10,944 chainNetMm10,1101 netFr3,941 netFr3,1098 netMm10,941 netMm10,1098 harris chainFr3,1015 chainMm10,1015 chainNetFr3,1018 chainNetMm10,1018 netFr3,1015 netMm10,1015 hart xenoRefGene,334 has est,117 intronEst,198 mrna,63 nestedRepeats,246 transMapV5,146 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 chainFr3,976 chainFr3,1056 chainFr3,1100 chainMm10,976 chainMm10,1056 chainMm10,1100 chainNetFr3,979 chainNetFr3,1059 chainNetFr3,1103 chainNetMm10,979 chainNetMm10,1059 chainNetMm10,1103 netFr3,976 netFr3,1056 netFr3,1100 netMm10,976 netMm10,1056 netMm10,1100 transMapEnsemblV5,763 transMapEnsemblV5,797 transMapEstV5,732 transMapEstV5,766 transMapRefSeqV5,732 transMapRefSeqV5,766 transMapRnaV5,732 transMapRnaV5,766 transMapV5,838 transMapV5,872 have chainFr3,573 chainMm10,573 chainNetFr3,576 chainNetMm10,576 intronEst,7 intronEst,89 nestedRepeats,88 netFr3,573 netMm10,573 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 est,694 est,703 intronEst,775 intronEst,784 mrna,410 mrna,419 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 helpful est,145 intronEst,226 mrna,91 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here rmsk,127 transMapEnsemblV5,137 transMapEnsemblV5,151 transMapEnsemblV5,644 transMapEstV5,106 transMapEstV5,120 transMapEstV5,613 transMapRefSeqV5,106 transMapRefSeqV5,120 transMapRefSeqV5,613 transMapRnaV5,106 transMapRnaV5,120 transMapRnaV5,613 transMapV5,212 transMapV5,226 transMapV5,719 uniprot,1795 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 transMapEnsemblV5,663 transMapEstV5,632 transMapRefSeqV5,632 transMapRnaV5,632 transMapV5,738 uniprot,1814 uniprot,1906 uniprot,1916 hiatt xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,192 hierarchy chainFr3,824 chainMm10,824 chainNetFr3,827 chainNetMm10,827 netFr3,824 netMm10,824 high gc5BaseBw,29 transMapV5,119 higher chainFr3,856 chainMm10,856 chainNetFr3,859 chainNetMm10,859 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netFr3,856 netMm10,856 rmsk,230 transMapV5,147 higher-level chainFr3,873 chainMm10,873 chainNetFr3,876 chainNetMm10,876 netFr3,873 netMm10,873 higher-scoring chainFr3,817 chainFr3,836 chainMm10,817 chainMm10,836 chainNetFr3,820 chainNetFr3,839 chainNetMm10,820 chainNetMm10,839 netFr3,817 netFr3,836 netMm10,817 netMm10,836 highest est,696 intronEst,777 mrna,412 uniprot,948 uniprot,1113 xenoRefGene,251 highest-scoring chainFr3,396 chainFr3,783 chainMm10,396 chainMm10,783 chainNetFr3,399 chainNetFr3,786 chainNetMm10,399 chainNetMm10,786 netFr3,396 netFr3,783 netMm10,396 netMm10,783 highlight est,336 gc5BaseBw,49 intronEst,417 mrna,282 highlighted est,306 est,324 intronEst,387 intronEst,405 mrna,252 mrna,270 uniprot,580 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainFr3,1052 chainMm10,1052 chainNetFr3,1055 chainNetMm10,1055 netFr3,1052 netMm10,1052 hiram gc5BaseBw,82 ucscToINSDC,51 his chainFr3,950 chainMm10,950 chainNetFr3,953 chainNetMm10,953 netFr3,950 netMm10,950 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainFr3,929 chainMm10,929 chainNetFr3,932 chainNetMm10,932 netFr3,929 netMm10,929 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainFr3,884 chainFr3,901 chainMm10,884 chainMm10,901 chainNetFr3,887 chainNetFr3,904 chainNetMm10,887 chainNetMm10,904 netFr3,884 netFr3,901 netMm10,884 netMm10,901 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,488 transMapEstV5,457 transMapRefSeqV5,457 transMapRnaV5,457 transMapV5,563 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 transMapEnsemblV5,662 transMapEstV5,631 transMapRefSeqV5,631 transMapRnaV5,631 transMapV5,737 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 ensemblGeneScaffold,89 ensemblGeneScaffold,107 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainFr3,1069 chainMm10,1069 chainNetFr3,1072 chainNetMm10,1072 genscan,217 nestedRepeats,404 netFr3,1069 netMm10,1069 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,365 transMapEnsemblV5,474 transMapEnsemblV5,741 transMapEnsemblV5,809 transMapEstV5,334 transMapEstV5,443 transMapEstV5,710 transMapEstV5,778 transMapRefSeqV5,334 transMapRefSeqV5,443 transMapRefSeqV5,710 transMapRefSeqV5,778 transMapRnaV5,334 transMapRnaV5,443 transMapRnaV5,710 transMapRnaV5,778 transMapV5,105 transMapV5,134 transMapV5,440 transMapV5,549 transMapV5,816 transMapV5,884 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainFr3,1104 chainMm10,1104 chainNetFr3,1107 chainNetMm10,1107 netFr3,1104 netMm10,1104 hybridizes est,500 intronEst,581 i est,754 est,778 intronEst,838 intronEst,862 mrna,471 mrna,495 i.e intronEst,72 id nestedRepeats,10 nestedRepeats,106 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainFr3,945 chainMm10,945 chainNetFr3,948 chainNetMm10,948 est,700 intronEst,781 netFr3,945 netMm10,945 transMapEnsemblV5,515 transMapEstV5,484 transMapRefSeqV5,484 transMapRnaV5,484 transMapV5,590 xenoRefGene,255 identifier transMapEnsemblV5,486 transMapEstV5,455 transMapRefSeqV5,455 transMapRnaV5,455 transMapV5,561 identifiers transMapEnsemblV5,387 transMapEnsemblV5,446 transMapEnsemblV5,464 transMapEstV5,356 transMapEstV5,415 transMapEstV5,433 transMapRefSeqV5,356 transMapRefSeqV5,415 transMapRefSeqV5,433 transMapRnaV5,356 transMapRnaV5,415 transMapRnaV5,433 transMapV5,462 transMapV5,521 transMapV5,539 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity est,698 est,706 est,718 intronEst,779 intronEst,787 intronEst,799 microsat,71 mrna,414 mrna,422 mrna,434 nestedRepeats,187 nestedRepeats,222 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if est,279 est,291 est,307 est,343 est,360 gap,77 intronEst,360 intronEst,372 intronEst,388 intronEst,424 intronEst,441 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 nestedRepeats,137 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,773 transMapEstV5,742 transMapRefSeqV5,742 transMapRnaV5,742 transMapV5,848 improved chainFr3,1018 chainMm10,1018 chainNetFr3,1021 chainNetMm10,1021 netFr3,1018 netMm10,1018 in augustusGene,101 chainFr3,31 chainFr3,95 chainFr3,116 chainFr3,148 chainFr3,155 chainFr3,170 chainFr3,189 chainFr3,192 chainFr3,232 chainFr3,253 chainFr3,300 chainFr3,333 chainFr3,363 chainFr3,375 chainFr3,384 chainFr3,402 chainFr3,407 chainFr3,416 chainFr3,428 chainFr3,442 chainFr3,484 chainFr3,501 chainFr3,532 chainFr3,550 chainFr3,564 chainFr3,600 chainFr3,697 chainFr3,785 chainFr3,826 chainFr3,834 chainFr3,850 chainFr3,883 chainFr3,895 chainFr3,1065 chainMm10,31 chainMm10,95 chainMm10,116 chainMm10,148 chainMm10,155 chainMm10,170 chainMm10,189 chainMm10,192 chainMm10,232 chainMm10,253 chainMm10,300 chainMm10,333 chainMm10,363 chainMm10,375 chainMm10,384 chainMm10,402 chainMm10,407 chainMm10,416 chainMm10,428 chainMm10,442 chainMm10,484 chainMm10,501 chainMm10,532 chainMm10,550 chainMm10,564 chainMm10,600 chainMm10,697 chainMm10,785 chainMm10,826 chainMm10,834 chainMm10,850 chainMm10,883 chainMm10,895 chainMm10,1065 chainNetFr3,34 chainNetFr3,98 chainNetFr3,119 chainNetFr3,151 chainNetFr3,158 chainNetFr3,173 chainNetFr3,192 chainNetFr3,195 chainNetFr3,235 chainNetFr3,256 chainNetFr3,303 chainNetFr3,336 chainNetFr3,366 chainNetFr3,378 chainNetFr3,387 chainNetFr3,405 chainNetFr3,410 chainNetFr3,419 chainNetFr3,431 chainNetFr3,445 chainNetFr3,487 chainNetFr3,504 chainNetFr3,535 chainNetFr3,553 chainNetFr3,567 chainNetFr3,603 chainNetFr3,700 chainNetFr3,788 chainNetFr3,829 chainNetFr3,837 chainNetFr3,853 chainNetFr3,886 chainNetFr3,898 chainNetFr3,1068 chainNetMm10,34 chainNetMm10,98 chainNetMm10,119 chainNetMm10,151 chainNetMm10,158 chainNetMm10,173 chainNetMm10,192 chainNetMm10,195 chainNetMm10,235 chainNetMm10,256 chainNetMm10,303 chainNetMm10,336 chainNetMm10,366 chainNetMm10,378 chainNetMm10,387 chainNetMm10,405 chainNetMm10,410 chainNetMm10,419 chainNetMm10,431 chainNetMm10,445 chainNetMm10,487 chainNetMm10,504 chainNetMm10,535 chainNetMm10,553 chainNetMm10,567 chainNetMm10,603 chainNetMm10,700 chainNetMm10,788 chainNetMm10,829 chainNetMm10,837 chainNetMm10,853 chainNetMm10,886 chainNetMm10,898 chainNetMm10,1068 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 ensemblGeneScaffold,31 ensemblGeneScaffold,47 ensemblGeneScaffold,83 ensemblGeneScaffold,93 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,276 est,398 est,531 est,579 est,689 gap,13 gap,26 gap,44 gap,74 gap,139 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,28 gold,67 gold,128 gold,139 gold,147 intronEst,25 intronEst,48 intronEst,86 intronEst,100 intronEst,144 intronEst,232 intronEst,253 intronEst,276 intronEst,286 intronEst,304 intronEst,357 intronEst,479 intronEst,612 intronEst,660 intronEst,770 intronEst,806 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netFr3,31 netFr3,95 netFr3,116 netFr3,148 netFr3,155 netFr3,170 netFr3,189 netFr3,192 netFr3,232 netFr3,253 netFr3,300 netFr3,333 netFr3,363 netFr3,375 netFr3,384 netFr3,402 netFr3,407 netFr3,416 netFr3,428 netFr3,442 netFr3,484 netFr3,501 netFr3,532 netFr3,550 netFr3,564 netFr3,600 netFr3,697 netFr3,785 netFr3,826 netFr3,834 netFr3,850 netFr3,883 netFr3,895 netFr3,1065 netMm10,31 netMm10,95 netMm10,116 netMm10,148 netMm10,155 netMm10,170 netMm10,189 netMm10,192 netMm10,232 netMm10,253 netMm10,300 netMm10,333 netMm10,363 netMm10,375 netMm10,384 netMm10,402 netMm10,407 netMm10,416 netMm10,428 netMm10,442 netMm10,484 netMm10,501 netMm10,532 netMm10,550 netMm10,564 netMm10,600 netMm10,697 netMm10,785 netMm10,826 netMm10,834 netMm10,850 netMm10,883 netMm10,895 netMm10,1065 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,161 transMapEnsemblV5,338 transMapEnsemblV5,362 transMapEnsemblV5,370 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,495 transMapEnsemblV5,545 transMapEnsemblV5,587 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,130 transMapEstV5,307 transMapEstV5,331 transMapEstV5,339 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,464 transMapEstV5,514 transMapEstV5,556 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,130 transMapRefSeqV5,307 transMapRefSeqV5,331 transMapRefSeqV5,339 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,464 transMapRefSeqV5,514 transMapRefSeqV5,556 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,130 transMapRnaV5,307 transMapRnaV5,331 transMapRnaV5,339 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,464 transMapRnaV5,514 transMapRnaV5,556 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,77 transMapV5,236 transMapV5,413 transMapV5,437 transMapV5,445 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,570 transMapV5,620 transMapV5,662 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,244 include est,133 est,338 est,362 intronEst,214 intronEst,419 intronEst,443 mrna,79 mrna,284 mrna,308 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 uniprot,1587 including est,7 intronEst,122 rmsk,188 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainFr3,139 chainFr3,247 chainMm10,139 chainMm10,247 chainNetFr3,142 chainNetFr3,250 chainNetMm10,142 chainNetMm10,250 ensemblGeneScaffold,37 est,71 mrna,52 nestedRepeats,153 netFr3,139 netFr3,247 netMm10,139 netMm10,247 indicates est,79 intronEst,150 intronEst,160 xenoRefGene,60 individual chainFr3,244 chainFr3,499 chainMm10,244 chainMm10,499 chainNetFr3,247 chainNetFr3,502 chainNetMm10,247 chainNetMm10,502 netFr3,244 netFr3,499 netMm10,244 netMm10,499 transMapEnsemblV5,603 transMapEstV5,572 transMapRefSeqV5,572 transMapRnaV5,572 transMapV5,678 information augustusGene,36 chainFr3,462 chainFr3,475 chainFr3,481 chainFr3,851 chainMm10,462 chainMm10,475 chainMm10,481 chainMm10,851 chainNetFr3,465 chainNetFr3,478 chainNetFr3,484 chainNetFr3,854 chainNetMm10,465 chainNetMm10,478 chainNetMm10,484 chainNetMm10,854 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 est,78 est,413 est,437 gap,35 gc5BaseBw,55 genscan,51 genscan,126 gold,37 intronEst,159 intronEst,494 intronEst,518 microsat,97 mrna,350 mrna,376 nestedRepeats,53 nestedRepeats,301 netFr3,462 netFr3,475 netFr3,481 netFr3,851 netMm10,462 netMm10,475 netMm10,481 netMm10,851 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,132 transMapEnsemblV5,149 transMapEnsemblV5,569 transMapEstV5,101 transMapEstV5,118 transMapEstV5,538 transMapRefSeqV5,101 transMapRefSeqV5,118 transMapRefSeqV5,538 transMapRnaV5,101 transMapRnaV5,118 transMapRnaV5,538 transMapV5,207 transMapV5,224 transMapV5,644 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,177 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainFr3,575 chainFr3,907 chainMm10,575 chainMm10,907 chainNetFr3,578 chainNetFr3,910 chainNetMm10,578 chainNetMm10,910 netFr3,575 netFr3,907 netMm10,575 netMm10,907 insertion chainFr3,154 chainMm10,154 chainNetFr3,157 chainNetMm10,157 est,442 intronEst,523 mrna,381 netFr3,154 netMm10,154 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 inside uniprot,560 inspection uniprot,1653 instead xenoRefGene,120 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 transMapEnsemblV5,634 transMapEstV5,603 transMapRefSeqV5,603 transMapRnaV5,603 transMapV5,709 uniprot,1785 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international est,739 intronEst,823 mrna,456 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainFr3,606 chainFr3,618 chainFr3,635 chainFr3,810 chainMm10,606 chainMm10,618 chainMm10,635 chainMm10,810 chainNetFr3,609 chainNetFr3,621 chainNetFr3,638 chainNetFr3,813 chainNetMm10,609 chainNetMm10,621 chainNetMm10,638 chainNetMm10,813 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 est,255 est,460 est,467 est,612 intronEst,336 intronEst,541 intronEst,548 intronEst,693 mrna,201 netFr3,606 netFr3,618 netFr3,635 netFr3,810 netMm10,606 netMm10,618 netMm10,635 netMm10,810 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 est,662 intronEst,71 intronEst,743 introns chainFr3,56 chainMm10,56 chainNetFr3,59 chainNetMm10,59 est,679 genscan,45 intronEst,760 netFr3,56 netMm10,56 inv chainFr3,537 chainMm10,537 chainNetFr3,540 chainNetMm10,540 netFr3,537 netMm10,537 inversions chainFr3,112 chainFr3,177 chainMm10,112 chainMm10,177 chainNetFr3,115 chainNetFr3,180 chainNetMm10,115 chainNetMm10,180 netFr3,112 netFr3,177 netMm10,112 netMm10,177 inverted chainFr3,869 chainMm10,869 chainNetFr3,872 chainNetMm10,872 netFr3,869 netMm10,869 involve chainFr3,167 chainMm10,167 chainNetFr3,170 chainNetMm10,170 netFr3,167 netMm10,167 is chainFr3,283 chainFr3,303 chainFr3,482 chainMm10,283 chainMm10,303 chainMm10,482 chainNetFr3,286 chainNetFr3,306 chainNetFr3,485 chainNetMm10,286 chainNetMm10,306 chainNetMm10,485 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 ensemblGeneScaffold,66 est,295 est,311 est,347 est,364 est,453 est,465 est,474 est,494 est,623 est,667 gap,47 gap,92 gap,99 gap,107 gc5BaseBw,32 gold,46 gold,120 gold,126 intronEst,104 intronEst,376 intronEst,392 intronEst,428 intronEst,445 intronEst,534 intronEst,546 intronEst,555 intronEst,575 intronEst,704 intronEst,748 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netFr3,283 netFr3,303 netFr3,482 netMm10,283 netMm10,303 netMm10,482 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,277 transMapEnsemblV5,421 transMapEnsemblV5,425 transMapEnsemblV5,437 transMapEnsemblV5,483 transMapEstV5,246 transMapEstV5,390 transMapEstV5,394 transMapEstV5,406 transMapEstV5,452 transMapRefSeqV5,246 transMapRefSeqV5,390 transMapRefSeqV5,394 transMapRefSeqV5,406 transMapRefSeqV5,452 transMapRnaV5,246 transMapRnaV5,390 transMapRnaV5,394 transMapRnaV5,406 transMapRnaV5,452 transMapV5,352 transMapV5,496 transMapV5,500 transMapV5,512 transMapV5,558 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,454 intronEst,535 issue est,769 est,795 intronEst,853 intronEst,879 mrna,486 mrna,512 uniprot,2004 xenoRefGene,356 xenoRefGene,390 it chainFr3,90 chainFr3,282 chainFr3,536 chainFr3,548 chainMm10,90 chainMm10,282 chainMm10,536 chainMm10,548 chainNetFr3,93 chainNetFr3,285 chainNetFr3,539 chainNetFr3,551 chainNetMm10,93 chainNetMm10,285 chainNetMm10,539 chainNetMm10,551 est,93 est,107 est,516 gap,98 genscan,143 intronEst,174 intronEst,188 intronEst,597 netFr3,90 netFr3,282 netFr3,536 netFr3,548 netMm10,90 netMm10,282 netMm10,536 netMm10,548 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 xenoRefGene,77 items chainFr3,500 chainMm10,500 chainNetFr3,503 chainNetMm10,503 ensemblGeneScaffold,28 ensemblGeneScaffold,36 est,65 est,138 est,148 est,342 intronEst,219 intronEst,229 intronEst,423 mrna,46 mrna,84 mrna,94 mrna,288 nestedRepeats,171 nestedRepeats,180 netFr3,500 netMm10,500 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 ensemblGeneScaffold,122 est,758 est,782 genscan,220 intronEst,842 intronEst,866 mrna,475 mrna,499 nestedRepeats,341 rmsk,364 transMapEnsemblV5,788 transMapEstV5,757 transMapRefSeqV5,757 transMapRnaV5,757 transMapV5,863 xenoRefGene,335 jan chainFr3,1111 chainMm10,1111 chainNetFr3,1114 chainNetMm10,1114 ensGene,199 ensemblGeneScaffold,138 est,766 est,791 intronEst,850 intronEst,875 microsat,129 mrna,483 mrna,508 netFr3,1111 netMm10,1111 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,353 xenoRefGene,386 jim chainFr3,967 chainFr3,994 chainFr3,1012 chainMm10,967 chainMm10,994 chainMm10,1012 chainNetFr3,970 chainNetFr3,997 chainNetFr3,1015 chainNetMm10,970 chainNetMm10,997 chainNetMm10,1015 netFr3,967 netFr3,994 netFr3,1012 netMm10,967 netMm10,994 netMm10,1012 joined chainFr3,124 chainMm10,124 chainNetFr3,127 chainNetMm10,127 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netFr3,124 netMm10,124 journal nestedRepeats,349 rmsk,372 jul cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 k augustusGene,268 est,752 intronEst,836 mrna,469 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi est,753 est,777 intronEst,837 intronEst,861 mrna,470 mrna,494 kasif genscan,193 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainFr3,641 chainMm10,641 chainNetFr3,644 chainNetMm10,644 netFr3,641 netMm10,641 kd-trees chainFr3,659 chainMm10,659 chainNetFr3,662 chainNetMm10,662 netFr3,659 netMm10,659 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainFr3,968 chainFr3,995 chainFr3,1013 chainFr3,1048 chainFr3,1090 chainMm10,968 chainMm10,995 chainMm10,1013 chainMm10,1048 chainMm10,1090 chainNetFr3,971 chainNetFr3,998 chainNetFr3,1016 chainNetFr3,1051 chainNetFr3,1093 chainNetMm10,971 chainNetMm10,998 chainNetMm10,1016 chainNetMm10,1051 chainNetMm10,1093 est,801 intronEst,885 mrna,518 netFr3,968 netFr3,995 netFr3,1013 netFr3,1048 netFr3,1090 netMm10,968 netMm10,995 netMm10,1013 netMm10,1048 netMm10,1090 xenoRefGene,303 kept est,724 mrna,440 xenoRefGene,279 km xenoRefGene,339 known chainFr3,918 chainMm10,918 chainNetFr3,921 chainNetMm10,921 gold,122 netFr3,918 netMm10,918 xenoRefGene,15 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 ensemblGeneScaffold,118 transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 lab augustusGene,252 label genscan,98 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled nestedRepeats,132 uniprot,457 xenoRefGene,106 labeling est,387 intronEst,468 labels nestedRepeats,161 xenoRefGene,78 landrum xenoRefGene,336 langton transMapEnsemblV5,721 transMapEstV5,690 transMapRefSeqV5,690 transMapRnaV5,690 transMapV5,796 largely chainFr3,143 chainMm10,143 chainNetFr3,146 chainNetMm10,146 netFr3,143 netMm10,143 larger intronEst,152 largest chainFr3,395 chainMm10,395 chainNetFr3,398 chainNetMm10,398 netFr3,395 netMm10,395 lastz chainFr3,593 chainFr3,767 chainFr3,916 chainMm10,593 chainMm10,767 chainMm10,916 chainNetFr3,596 chainNetFr3,770 chainNetFr3,919 chainNetMm10,596 chainNetMm10,770 chainNetMm10,919 netFr3,593 netFr3,767 netFr3,916 netMm10,593 netMm10,767 netMm10,916 transMapV5,46 lau transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 lavtoaxt chainFr3,611 chainMm10,611 chainNetFr3,614 chainNetMm10,614 netFr3,611 netMm10,611 least est,715 intronEst,68 intronEst,83 intronEst,796 microsat,29 microsat,78 mrna,431 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 est,38 est,663 genscan,39 intronEst,49 intronEst,87 intronEst,744 less transMapEnsemblV5,375 transMapEstV5,344 transMapRefSeqV5,344 transMapRnaV5,344 transMapV5,450 uniprot,680 xenoRefGene,234 level chainFr3,390 chainFr3,424 chainFr3,429 chainFr3,436 chainFr3,494 chainFr3,521 chainFr3,534 chainFr3,566 chainMm10,390 chainMm10,424 chainMm10,429 chainMm10,436 chainMm10,494 chainMm10,521 chainMm10,534 chainMm10,566 chainNetFr3,393 chainNetFr3,427 chainNetFr3,432 chainNetFr3,439 chainNetFr3,497 chainNetFr3,524 chainNetFr3,537 chainNetFr3,569 chainNetMm10,393 chainNetMm10,427 chainNetMm10,432 chainNetMm10,439 chainNetMm10,497 chainNetMm10,524 chainNetMm10,537 chainNetMm10,569 est,707 intronEst,97 intronEst,788 mrna,423 netFr3,390 netFr3,424 netFr3,429 netFr3,436 netFr3,494 netFr3,521 netFr3,534 netFr3,566 netMm10,390 netMm10,424 netMm10,429 netMm10,436 netMm10,494 netMm10,521 netMm10,534 netMm10,566 rmsk,205 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries est,560 intronEst,641 nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like chainFr3,47 chainFr3,55 chainMm10,47 chainMm10,55 chainNetFr3,50 chainNetFr3,58 chainNetMm10,50 chainNetMm10,58 ensGene,148 netFr3,47 netFr3,55 netMm10,47 netMm10,55 uniprot,1541 likely augustusGene,111 microsat,17 transMapV5,94 line chainFr3,472 chainMm10,472 chainNetFr3,475 chainNetMm10,475 gap,106 gold,125 nestedRepeats,151 netFr3,472 netMm10,472 rmsk,165 uniprot,1872 uniprot,1876 line-up chainFr3,539 chainMm10,539 chainNetFr3,542 chainNetMm10,542 netFr3,539 netMm10,539 line-ups chainFr3,524 chainMm10,524 chainNetFr3,527 chainNetMm10,527 netFr3,524 netMm10,524 lineage transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 lineage-specific chainFr3,942 chainMm10,942 chainNetFr3,945 chainNetMm10,945 netFr3,942 netMm10,942 linear chainFr3,701 chainMm10,701 chainNetFr3,704 chainNetMm10,704 ensemblGeneScaffold,48 netFr3,701 netMm10,701 lineargap chainFr3,707 chainMm10,707 chainNetFr3,710 chainNetMm10,710 netFr3,707 netMm10,707 lines chainFr3,131 chainFr3,138 chainFr3,161 chainFr3,452 chainMm10,131 chainMm10,138 chainMm10,161 chainMm10,452 chainNetFr3,134 chainNetFr3,141 chainNetFr3,164 chainNetFr3,455 chainNetMm10,134 chainNetMm10,141 chainNetMm10,164 chainNetMm10,455 nestedRepeats,131 netFr3,131 netFr3,138 netFr3,161 netFr3,452 netMm10,131 netMm10,138 netMm10,161 netMm10,452 link gc5BaseBw,63 uniprot,491 uniprot,1675 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman est,755 est,779 intronEst,839 intronEst,863 mrna,472 mrna,496 lipoification uniprot,577 list est,212 intronEst,293 mrna,158 uniprot,979 uniprot,1165 uniprot,1831 listed ensGene,49 literature uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainFr3,111 chainFr3,183 chainMm10,111 chainMm10,183 chainNetFr3,114 chainNetFr3,186 chainNetMm10,114 chainNetMm10,186 ensGene,73 nestedRepeats,98 netFr3,111 netFr3,183 netMm10,111 netMm10,183 located simpleRepeat,21 location chainFr3,252 chainMm10,252 chainNetFr3,255 chainNetMm10,255 netFr3,252 netMm10,252 transMapEnsemblV5,404 transMapEnsemblV5,414 transMapEnsemblV5,481 transMapEstV5,373 transMapEstV5,383 transMapEstV5,450 transMapRefSeqV5,373 transMapRefSeqV5,383 transMapRefSeqV5,450 transMapRnaV5,373 transMapRnaV5,383 transMapRnaV5,450 transMapV5,479 transMapV5,489 transMapV5,556 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 uniprot,451 logic est,290 intronEst,371 mrna,236 long est,678 intronEst,759 rmsk,161 rmsk,166 long-established transMapEnsemblV5,805 transMapEstV5,774 transMapRefSeqV5,774 transMapRnaV5,774 transMapV5,880 longer chainFr3,82 chainMm10,82 chainNetFr3,85 chainNetMm10,85 netFr3,82 netMm10,82 longest chainFr3,517 chainMm10,517 chainNetFr3,520 chainNetMm10,520 netFr3,517 netMm10,517 look chainFr3,46 chainMm10,46 chainNetFr3,49 chainNetMm10,49 netFr3,46 netMm10,46 loose chainMm10,708 chainNetMm10,711 netMm10,708 losses transMapEnsemblV5,803 transMapEstV5,772 transMapRefSeqV5,772 transMapRnaV5,772 transMapV5,878 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 lower chainFr3,493 chainMm10,493 chainNetFr3,496 chainNetMm10,496 netFr3,493 netMm10,493 lower-level chainFr3,858 chainFr3,864 chainMm10,858 chainMm10,864 chainNetFr3,861 chainNetFr3,867 chainNetMm10,861 chainNetMm10,867 netFr3,858 netFr3,864 netMm10,858 netMm10,864 ls-snp uniprot,1536 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 est,750 intronEst,834 mrna,467 transMapEnsemblV5,717 transMapEnsemblV5,724 transMapEnsemblV5,758 transMapEnsemblV5,760 transMapEnsemblV5,792 transMapEstV5,686 transMapEstV5,693 transMapEstV5,727 transMapEstV5,729 transMapEstV5,761 transMapRefSeqV5,686 transMapRefSeqV5,693 transMapRefSeqV5,727 transMapRefSeqV5,729 transMapRefSeqV5,761 transMapRnaV5,686 transMapRnaV5,693 transMapRnaV5,727 transMapRnaV5,729 transMapRnaV5,761 transMapV5,792 transMapV5,799 transMapV5,833 transMapV5,835 transMapV5,867 made rmsk,110 transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 uniprot,931 uniprot,938 maglott xenoRefGene,366 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make est,449 est,515 gold,76 intronEst,530 intronEst,596 rmsk,123 transMapEnsemblV5,430 transMapEstV5,399 transMapRefSeqV5,399 transMapRnaV5,399 transMapV5,505 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 rmsk,391 rmsk,405 xenoRefGene,346 manner uniprot,1469 manual uniprot,1652 many chainFr3,403 chainMm10,403 chainNetFr3,406 chainNetMm10,406 est,147 intronEst,112 intronEst,228 mrna,93 netFr3,403 netMm10,403 uniprot,932 uniprot,1124 map chainFr3,331 chainMm10,331 chainNetFr3,334 chainNetMm10,334 ensemblGeneScaffold,46 netFr3,331 netMm10,331 transMapEnsemblV5,294 transMapEstV5,263 transMapRefSeqV5,263 transMapRnaV5,263 transMapV5,369 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 transMapEnsemblV5,381 transMapEnsemblV5,413 transMapEnsemblV5,471 transMapEnsemblV5,769 transMapEstV5,350 transMapEstV5,382 transMapEstV5,440 transMapEstV5,738 transMapRefSeqV5,350 transMapRefSeqV5,382 transMapRefSeqV5,440 transMapRefSeqV5,738 transMapRnaV5,350 transMapRnaV5,382 transMapRnaV5,440 transMapRnaV5,738 transMapV5,131 transMapV5,456 transMapV5,488 transMapV5,546 transMapV5,844 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 ensemblGeneScaffold,7 ensemblGeneScaffold,15 gap,4 gc5BaseBw,8 gold,5 transMapEnsemblV5,267 transMapEnsemblV5,287 transMapEnsemblV5,300 transMapEstV5,236 transMapEstV5,256 transMapEstV5,269 transMapRefSeqV5,236 transMapRefSeqV5,256 transMapRefSeqV5,269 transMapRnaV5,236 transMapRnaV5,256 transMapRnaV5,269 transMapV5,342 transMapV5,362 transMapV5,375 ucscToINSDC,10 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,503 transMapEstV5,5 transMapEstV5,472 transMapRefSeqV5,6 transMapRefSeqV5,472 transMapRnaV5,6 transMapRnaV5,472 transMapV5,578 uniprot,1362 maps transMapEnsemblV5,477 transMapEnsemblV5,490 transMapEstV5,446 transMapEstV5,459 transMapRefSeqV5,446 transMapRefSeqV5,459 transMapRnaV5,446 transMapRnaV5,459 transMapV5,72 transMapV5,552 transMapV5,565 mar augustusGene,309 transMapEnsemblV5,780 transMapEstV5,749 transMapRefSeqV5,749 transMapRnaV5,749 transMapV5,855 mario augustusGene,102 augustusGene,283 mark est,536 intronEst,617 transMapEnsemblV5,682 transMapEstV5,651 transMapRefSeqV5,651 transMapRnaV5,651 transMapV5,757 uniprot,1539 uniprot,1956 marked gap,138 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainFr3,257 chainFr3,518 chainFr3,556 chainMm10,257 chainMm10,518 chainMm10,556 chainNetFr3,260 chainNetFr3,521 chainNetFr3,559 chainNetMm10,260 chainNetMm10,521 chainNetMm10,559 est,84 est,300 est,315 est,356 est,374 intronEst,165 intronEst,381 intronEst,396 intronEst,437 intronEst,455 mrna,246 mrna,261 mrna,302 mrna,320 netFr3,257 netFr3,518 netFr3,556 netMm10,257 netMm10,518 netMm10,556 uniprot,1305 uniprot,1341 matches est,72 mrna,53 matching chainFr3,260 chainMm10,260 chainNetFr3,263 chainNetMm10,263 est,90 intronEst,171 netFr3,260 netMm10,260 uniprot,1068 uniprot,1075 matrix chainFr3,671 chainFr3,703 chainMm10,671 chainMm10,703 chainNetFr3,674 chainNetFr3,706 chainNetMm10,674 chainNetMm10,706 netFr3,671 netFr3,703 netMm10,671 netMm10,703 mature est,506 intronEst,587 unipChain,3 uniprot,251 uniprot,292 maximally chainFr3,663 chainMm10,663 chainNetFr3,666 chainNetMm10,666 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netFr3,663 netMm10,663 maximilian uniprot,1944 maximum est,661 intronEst,742 maxtracks augustusGene,139 may chainFr3,174 chainFr3,432 chainMm10,174 chainMm10,432 chainNetFr3,177 chainNetFr3,435 chainNetMm10,177 chainNetMm10,435 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 est,143 est,262 est,272 est,380 est,431 est,511 est,513 est,525 est,527 est,547 est,672 gap,15 gc5BaseBw,40 gold,17 intronEst,224 intronEst,343 intronEst,353 intronEst,461 intronEst,512 intronEst,592 intronEst,594 intronEst,606 intronEst,608 intronEst,628 intronEst,753 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 nestedRepeats,268 nestedRepeats,290 netFr3,174 netFr3,432 netMm10,174 netMm10,432 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEstV5,77 transMapEstV5,112 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRnaV5,77 transMapRnaV5,112 transMapV5,183 transMapV5,218 uniprot,2046 mcgarvey xenoRefGene,338 md5 uniprot,1601 mdash est,485 est,489 intronEst,566 intronEst,570 mediating uniprot,314 medium chainFr3,708 chainNetFr3,711 netFr3,708 xenoRefGene,73 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu xenoRefGene,174 method ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 chainFr3,568 chainFr3,771 chainMm10,568 chainMm10,771 chainNetFr3,571 chainNetFr3,774 chainNetMm10,571 chainNetMm10,774 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 ensemblGeneScaffold,63 ensemblGeneScaffold,81 est,447 genscan,130 genscan,197 intronEst,528 microsat,45 mrna,386 nestedRepeats,244 netFr3,568 netFr3,771 netMm10,568 netMm10,771 rmsk,286 simpleRepeat,55 transMapEnsemblV5,152 transMapEstV5,121 transMapRefSeqV5,121 transMapRnaV5,121 transMapV5,227 uniprot,777 windowmaskerSdust,46 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,681 intronEst,189 intronEst,762 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainFr3,936 chainFr3,973 chainFr3,1034 chainFr3,1054 chainFr3,1102 chainMm10,936 chainMm10,973 chainMm10,1034 chainMm10,1054 chainMm10,1102 chainNetFr3,939 chainNetFr3,976 chainNetFr3,1037 chainNetFr3,1057 chainNetFr3,1105 chainNetMm10,939 chainNetMm10,976 chainNetMm10,1037 chainNetMm10,1057 chainNetMm10,1105 netFr3,936 netFr3,973 netFr3,1034 netFr3,1054 netFr3,1102 netMm10,936 netMm10,973 netMm10,1034 netMm10,1054 netMm10,1102 minexonintronprob augustusGene,135 minimum chainFr3,684 chainMm10,684 chainNetFr3,687 chainNetMm10,687 netFr3,684 netMm10,684 minmeanexonintronprob augustusGene,137 minmei chainFr3,928 chainMm10,928 chainNetFr3,931 chainNetMm10,931 netFr3,928 netMm10,928 mismatch rmsk,218 misplacements uniprot,853 mj xenoRefGene,337 mk_counts windowmaskerSdust,59 mm10 chainMm10,7 chainMm10,69 chainMm10,309 chainNetMm10,8 chainNetMm10,72 chainNetMm10,312 chainNetMm10Viewchain,6 chainNetMm10Viewnet,6 netMm10,7 netMm10,69 netMm10,309 mode chainFr3,387 chainMm10,387 chainNetFr3,390 chainNetMm10,390 est,63 est,128 gold,69 intronEst,147 intronEst,209 mrna,44 mrna,74 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netFr3,387 netMm10,387 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainFr3,242 chainMm10,242 chainNetFr3,245 chainNetMm10,245 netFr3,242 netMm10,242 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 chainFr3,163 chainFr3,224 chainMm10,163 chainMm10,224 chainNetFr3,166 chainNetFr3,227 chainNetMm10,166 chainNetMm10,227 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 est,68 est,175 est,282 est,412 est,436 genscan,50 genscan,125 genscan,163 intronEst,256 intronEst,363 intronEst,493 intronEst,517 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 nestedRepeats,211 nestedRepeats,300 netFr3,163 netFr3,224 netMm10,163 netMm10,224 rmsk,323 simpleRepeat,57 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,224 transMapEnsemblV5,269 transMapEnsemblV5,291 transMapEnsemblV5,568 transMapEstV5,100 transMapEstV5,117 transMapEstV5,193 transMapEstV5,238 transMapEstV5,260 transMapEstV5,537 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,193 transMapRefSeqV5,238 transMapRefSeqV5,260 transMapRefSeqV5,537 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,193 transMapRnaV5,238 transMapRnaV5,260 transMapRnaV5,537 transMapV5,63 transMapV5,107 transMapV5,164 transMapV5,206 transMapV5,223 transMapV5,299 transMapV5,344 transMapV5,366 transMapV5,643 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,484 intronEst,565 nestedRepeats,249 transMapV5,93 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainFr3,1067 chainMm10,1 chainMm10,3 chainMm10,65 chainMm10,97 chainMm10,150 chainMm10,270 chainMm10,297 chainMm10,578 chainMm10,627 chainMm10,1067 chainNetFr3,1070 chainNetMm10,1 chainNetMm10,4 chainNetMm10,68 chainNetMm10,100 chainNetMm10,153 chainNetMm10,273 chainNetMm10,300 chainNetMm10,581 chainNetMm10,630 chainNetMm10,1070 chainNetMm10Viewchain,2 chainNetMm10Viewnet,2 netFr3,1067 netMm10,1 netMm10,3 netMm10,65 netMm10,97 netMm10,150 netMm10,270 netMm10,297 netMm10,578 netMm10,627 netMm10,1067 transMapEnsemblV5,44 transMapEnsemblV5,367 transMapEstV5,336 transMapRefSeqV5,336 transMapRnaV5,336 transMapV5,442 uniprot,521 uniprot,535 mrna est,9 est,507 est,523 est,606 intronEst,10 intronEst,588 intronEst,604 intronEst,687 mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 transMapEnsemblV5,458 transMapEstV5,427 transMapRefSeqV5,427 transMapRnaV5,18 transMapRnaV5,427 transMapV5,100 transMapV5,533 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 transMapEnsemblV5,173 transMapEstV5,142 transMapRefSeqV5,142 transMapRnaV5,142 transMapV5,111 transMapV5,248 much chainFr3,885 chainFr3,902 chainMm10,885 chainMm10,902 chainNetFr3,888 chainNetFr3,905 chainNetMm10,888 chainNetMm10,905 nestedRepeats,210 netFr3,885 netFr3,902 netMm10,885 netMm10,902 mujica uniprot,1967 multiple chainFr3,195 chainMm10,195 chainNetFr3,198 chainNetMm10,198 est,260 est,690 intronEst,341 intronEst,771 mrna,206 mrna,406 netFr3,195 netMm10,195 transMapEnsemblV5,501 transMapEstV5,470 transMapRefSeqV5,470 transMapRnaV5,470 transMapV5,576 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,245 must intronEst,63 intronEst,80 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainFr3,184 chainMm10,184 chainNetFr3,187 chainNetMm10,187 netFr3,184 netMm10,184 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 ensemblGeneScaffold,71 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name chainFr3,369 chainMm10,369 chainNetFr3,372 chainNetMm10,372 est,201 intronEst,282 mrna,147 nestedRepeats,136 netFr3,369 netMm10,369 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainFr3,246 chainMm10,246 chainNetFr3,249 chainNetMm10,249 netFr3,246 netMm10,246 ucscToINSDC,21 ucscToINSDC,24 xenoRefGene,131 native augustusGene,295 transMapEnsemblV5,766 transMapEstV5,735 transMapRefSeqV5,735 transMapRnaV5,735 transMapV5,123 transMapV5,841 natl chainFr3,1072 chainMm10,1072 chainNetFr3,1075 chainNetMm10,1075 netFr3,1072 netMm10,1072 natural chainFr3,823 chainMm10,823 chainNetFr3,826 chainNetMm10,826 netFr3,823 netMm10,823 nbci uniprot,822 nbsp chainFr3,674 chainMm10,674 chainNetFr3,677 chainNetMm10,677 netFr3,674 netMm10,674 nc_002081 gold,160 ncbi gap,28 gap,31 gap,57 gold,30 gold,33 gold,56 ucscToINSDC,39 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 near-best transMapEnsemblV5,358 transMapEstV5,327 transMapRefSeqV5,327 transMapRnaV5,327 transMapV5,433 necessary chainFr3,807 chainMm10,807 chainNetFr3,810 chainNetMm10,810 netFr3,807 netMm10,807 nematodes augustusGene,211 net chainFr3,34 chainFr3,262 chainFr3,265 chainFr3,382 chainFr3,761 chainMm10,34 chainMm10,262 chainMm10,265 chainMm10,382 chainMm10,761 chainNetFr3,3 chainNetFr3,11 chainNetFr3,37 chainNetFr3,265 chainNetFr3,268 chainNetFr3,385 chainNetFr3,764 chainNetFr3Viewchain,9 chainNetFr3Viewnet,1 chainNetFr3Viewnet,9 chainNetMm10,3 chainNetMm10,11 chainNetMm10,37 chainNetMm10,265 chainNetMm10,268 chainNetMm10,385 chainNetMm10,764 chainNetMm10Viewchain,9 chainNetMm10Viewnet,1 chainNetMm10Viewnet,9 netFr3,2 netFr3,9 netFr3,34 netFr3,262 netFr3,265 netFr3,382 netFr3,761 netMm10,2 netMm10,9 netMm10,34 netMm10,262 netMm10,265 netMm10,382 netMm10,761 transMapV5,140 netclass chainFr3,877 chainFr3,1000 chainMm10,877 chainMm10,1000 chainNetFr3,880 chainNetFr3,1003 chainNetMm10,880 chainNetMm10,1003 netFr3,877 netFr3,1000 netMm10,877 netMm10,1000 netfilter transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 nets chainFr3,987 chainMm10,987 chainNetFr3,990 chainNetMm10,990 netFr3,987 netMm10,987 transMapEnsemblV5,200 transMapEnsemblV5,243 transMapEnsemblV5,249 transMapEnsemblV5,263 transMapEstV5,169 transMapEstV5,212 transMapEstV5,218 transMapEstV5,232 transMapRefSeqV5,169 transMapRefSeqV5,212 transMapRefSeqV5,218 transMapRefSeqV5,232 transMapRnaV5,169 transMapRnaV5,212 transMapRnaV5,218 transMapRnaV5,232 transMapV5,89 transMapV5,275 transMapV5,318 transMapV5,324 transMapV5,338 netsyntenic chainFr3,845 chainFr3,998 chainMm10,845 chainMm10,998 chainNetFr3,848 chainNetFr3,1001 chainNetMm10,848 chainNetMm10,1001 netFr3,845 netFr3,998 netMm10,845 netMm10,998 new augustusGene,329 newer est,558 intronEst,639 nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainFr3,348 chainFr3,377 chainMm10,348 chainMm10,377 chainNetFr3,351 chainNetFr3,380 chainNetMm10,351 chainNetMm10,380 netFr3,348 netFr3,377 netMm10,348 netMm10,377 nig augustusGene,270 no est,95 intronEst,176 microsat,73 transMapEnsemblV5,223 transMapEstV5,192 transMapRefSeqV5,192 transMapRnaV5,192 transMapV5,298 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainFr3,49 chainMm10,49 chainNetFr3,52 chainNetMm10,52 netFr3,49 netMm10,49 non-atlantic xenoRefGene,3 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,627 intronEst,708 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn chainFr3,554 chainMm10,554 chainNetFr3,557 chainNetMm10,557 netFr3,554 netMm10,554 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainFr3,812 chainMm10,812 chainNetFr3,815 chainNetMm10,815 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 ensemblGeneScaffold,45 est,352 est,487 est,514 est,528 gap,137 intronEst,433 intronEst,568 intronEst,595 intronEst,609 mrna,298 netFr3,812 netMm10,812 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note est,658 intronEst,739 nestedRepeats,264 transMapEnsemblV5,499 transMapEstV5,468 transMapRefSeqV5,468 transMapRnaV5,468 transMapV5,574 uniprot,695 novel transMapEnsemblV5,740 transMapEstV5,709 transMapRefSeqV5,709 transMapRnaV5,709 transMapV5,815 novo augustusGene,304 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 now uniprot,1680 ns chainFr3,892 chainMm10,892 chainNetFr3,895 chainNetMm10,895 gap,134 netFr3,892 netMm10,892 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 ensemblGeneScaffold,134 est,762 est,787 intronEst,846 intronEst,871 microsat,125 mrna,479 mrna,504 simpleRepeat,85 uniprot,1997 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 intronEst,153 rmsk,233 transMapEnsemblV5,427 transMapEnsemblV5,550 transMapEstV5,396 transMapEstV5,519 transMapRefSeqV5,396 transMapRefSeqV5,519 transMapRnaV5,396 transMapRnaV5,519 transMapV5,502 transMapV5,625 o xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 transMapEnsemblV5,157 transMapEnsemblV5,612 transMapEstV5,126 transMapEstV5,581 transMapRefSeqV5,126 transMapRefSeqV5,581 transMapRnaV5,126 transMapRnaV5,581 transMapV5,232 transMapV5,687 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 chainFr3,4 chainFr3,66 chainFr3,306 chainNetFr3,5 chainNetFr3,69 chainNetFr3,309 chainNetFr3Viewchain,3 chainNetFr3Viewnet,3 netFr3,4 netFr3,66 netFr3,306 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainFr3,17 chainFr3,64 chainFr3,182 chainFr3,202 chainFr3,255 chainFr3,277 chainFr3,360 chainFr3,370 chainFr3,488 chainFr3,508 chainFr3,643 chainFr3,648 chainFr3,666 chainFr3,686 chainFr3,886 chainFr3,961 chainFr3,983 chainFr3,1007 chainFr3,1021 chainMm10,17 chainMm10,64 chainMm10,182 chainMm10,202 chainMm10,255 chainMm10,277 chainMm10,360 chainMm10,370 chainMm10,488 chainMm10,508 chainMm10,643 chainMm10,648 chainMm10,666 chainMm10,686 chainMm10,886 chainMm10,961 chainMm10,983 chainMm10,1007 chainMm10,1021 chainNetFr3,20 chainNetFr3,67 chainNetFr3,185 chainNetFr3,205 chainNetFr3,258 chainNetFr3,280 chainNetFr3,363 chainNetFr3,373 chainNetFr3,491 chainNetFr3,511 chainNetFr3,646 chainNetFr3,651 chainNetFr3,669 chainNetFr3,689 chainNetFr3,889 chainNetFr3,964 chainNetFr3,986 chainNetFr3,1010 chainNetFr3,1024 chainNetMm10,20 chainNetMm10,67 chainNetMm10,185 chainNetMm10,205 chainNetMm10,258 chainNetMm10,280 chainNetMm10,363 chainNetMm10,373 chainNetMm10,491 chainNetMm10,511 chainNetMm10,646 chainNetMm10,651 chainNetMm10,669 chainNetMm10,689 chainNetMm10,889 chainNetMm10,964 chainNetMm10,986 chainNetMm10,1010 chainNetMm10,1024 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 ensemblGeneScaffold,16 ensemblGeneScaffold,39 ensemblGeneScaffold,79 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,318 est,428 est,505 est,521 est,539 est,556 est,618 est,626 est,630 est,710 gap,41 gap,64 gap,83 gap,89 gap,123 gap,133 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,43 gold,63 gold,89 gold,114 gold,144 intronEst,33 intronEst,54 intronEst,66 intronEst,98 intronEst,110 intronEst,119 intronEst,154 intronEst,163 intronEst,181 intronEst,183 intronEst,218 intronEst,257 intronEst,283 intronEst,294 intronEst,330 intronEst,399 intronEst,509 intronEst,586 intronEst,602 intronEst,620 intronEst,637 intronEst,699 intronEst,707 intronEst,711 intronEst,791 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netFr3,17 netFr3,64 netFr3,182 netFr3,202 netFr3,255 netFr3,277 netFr3,360 netFr3,370 netFr3,488 netFr3,508 netFr3,643 netFr3,648 netFr3,666 netFr3,686 netFr3,886 netFr3,961 netFr3,983 netFr3,1007 netFr3,1021 netMm10,17 netMm10,64 netMm10,182 netMm10,202 netMm10,255 netMm10,277 netMm10,360 netMm10,370 netMm10,488 netMm10,508 netMm10,643 netMm10,648 netMm10,666 netMm10,686 netMm10,886 netMm10,961 netMm10,983 netMm10,1007 netMm10,1021 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,140 transMapEnsemblV5,169 transMapEnsemblV5,209 transMapEnsemblV5,275 transMapEnsemblV5,282 transMapEnsemblV5,298 transMapEnsemblV5,310 transMapEnsemblV5,323 transMapEnsemblV5,341 transMapEnsemblV5,360 transMapEnsemblV5,378 transMapEnsemblV5,457 transMapEnsemblV5,508 transMapEnsemblV5,551 transMapEnsemblV5,739 transMapEnsemblV5,804 transMapEstV5,54 transMapEstV5,109 transMapEstV5,138 transMapEstV5,178 transMapEstV5,244 transMapEstV5,251 transMapEstV5,267 transMapEstV5,279 transMapEstV5,292 transMapEstV5,310 transMapEstV5,329 transMapEstV5,347 transMapEstV5,426 transMapEstV5,477 transMapEstV5,520 transMapEstV5,708 transMapEstV5,773 transMapRefSeqV5,54 transMapRefSeqV5,109 transMapRefSeqV5,138 transMapRefSeqV5,178 transMapRefSeqV5,244 transMapRefSeqV5,251 transMapRefSeqV5,267 transMapRefSeqV5,279 transMapRefSeqV5,292 transMapRefSeqV5,310 transMapRefSeqV5,329 transMapRefSeqV5,347 transMapRefSeqV5,426 transMapRefSeqV5,477 transMapRefSeqV5,520 transMapRefSeqV5,708 transMapRefSeqV5,773 transMapRnaV5,54 transMapRnaV5,109 transMapRnaV5,138 transMapRnaV5,178 transMapRnaV5,244 transMapRnaV5,251 transMapRnaV5,267 transMapRnaV5,279 transMapRnaV5,292 transMapRnaV5,310 transMapRnaV5,329 transMapRnaV5,347 transMapRnaV5,426 transMapRnaV5,477 transMapRnaV5,520 transMapRnaV5,708 transMapRnaV5,773 transMapV5,55 transMapV5,215 transMapV5,244 transMapV5,284 transMapV5,350 transMapV5,357 transMapV5,373 transMapV5,385 transMapV5,398 transMapV5,416 transMapV5,435 transMapV5,453 transMapV5,532 transMapV5,583 transMapV5,626 transMapV5,814 transMapV5,879 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainFr3,339 chainFr3,345 chainMm10,339 chainMm10,345 chainNetFr3,342 chainNetFr3,348 chainNetMm10,342 chainNetMm10,348 netFr3,339 netFr3,345 netMm10,339 netMm10,345 xenoRefGene,134 offers genscan,79 often chainFr3,213 chainFr3,225 chainMm10,213 chainMm10,225 chainNetFr3,216 chainNetFr3,228 chainNetMm10,216 chainNetMm10,228 netFr3,213 netFr3,225 netMm10,213 netMm10,225 older uniprot,1560 uniprot,1647 oligo-dt est,498 intronEst,579 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainFr3,327 chainFr3,353 chainFr3,456 chainFr3,470 chainFr3,520 chainFr3,525 chainFr3,540 chainFr3,773 chainMm10,327 chainMm10,353 chainMm10,456 chainMm10,470 chainMm10,520 chainMm10,525 chainMm10,540 chainMm10,773 chainNetFr3,330 chainNetFr3,356 chainNetFr3,459 chainNetFr3,473 chainNetFr3,523 chainNetFr3,528 chainNetFr3,543 chainNetFr3,776 chainNetMm10,330 chainNetMm10,356 chainNetMm10,459 chainNetMm10,473 chainNetMm10,523 chainNetMm10,528 chainNetMm10,543 chainNetMm10,776 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 est,232 est,281 gap,86 genscan,27 genscan,52 intronEst,313 intronEst,362 mrna,178 mrna,227 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netFr3,327 netFr3,353 netFr3,456 netFr3,470 netFr3,520 netFr3,525 netFr3,540 netFr3,773 netMm10,327 netMm10,353 netMm10,456 netMm10,470 netMm10,520 netMm10,525 netMm10,540 netMm10,773 rmsk,74 transMapEnsemblV5,570 transMapEnsemblV5,807 transMapEstV5,539 transMapEstV5,776 transMapRefSeqV5,539 transMapRefSeqV5,776 transMapRnaV5,539 transMapRnaV5,776 transMapV5,103 transMapV5,645 transMapV5,882 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,345 once est,266 intronEst,347 mrna,212 uniprot,647 one augustusGene,169 chainFr3,190 chainFr3,361 chainFr3,507 chainFr3,800 chainFr3,896 chainMm10,190 chainMm10,361 chainMm10,507 chainMm10,800 chainMm10,896 chainNetFr3,193 chainNetFr3,364 chainNetFr3,510 chainNetFr3,803 chainNetFr3,899 chainNetMm10,193 chainNetMm10,364 chainNetMm10,510 chainNetMm10,803 chainNetMm10,899 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 est,173 est,284 est,317 gold,156 intronEst,69 intronEst,254 intronEst,365 intronEst,398 mrna,119 mrna,230 mrna,263 netFr3,190 netFr3,361 netFr3,507 netFr3,800 netFr3,896 netMm10,190 netMm10,361 netMm10,507 netMm10,800 netMm10,896 transMapV5,78 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainFr3,357 chainMm10,357 chainNetFr3,360 chainNetMm10,360 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 est,157 est,297 est,370 est,403 est,701 intronEst,238 intronEst,378 intronEst,451 intronEst,484 intronEst,782 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 netFr3,357 netMm10,357 transMapEnsemblV5,49 transMapEnsemblV5,653 transMapEstV5,622 transMapRefSeqV5,622 transMapRnaV5,622 transMapV5,728 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,210 xenoRefGene,256 onto ensemblGeneScaffold,21 oommen transMapEnsemblV5,731 transMapEstV5,700 transMapRefSeqV5,700 transMapRnaV5,700 transMapV5,806 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainFr3,552 chainMm10,552 chainNetFr3,555 chainNetMm10,555 netFr3,552 netMm10,552 option augustusGene,167 augustusGene,187 est,416 genscan,94 intronEst,497 mrna,353 transMapEnsemblV5,135 transMapEstV5,104 transMapRefSeqV5,104 transMapRnaV5,104 transMapV5,210 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options est,445 gc5BaseBw,70 genscan,85 intronEst,526 mrna,384 or chainFr3,30 chainFr3,129 chainFr3,152 chainFr3,185 chainFr3,491 chainFr3,868 chainFr3,897 chainMm10,30 chainMm10,129 chainMm10,152 chainMm10,185 chainMm10,491 chainMm10,868 chainMm10,897 chainNetFr3,33 chainNetFr3,132 chainNetFr3,155 chainNetFr3,188 chainNetFr3,494 chainNetFr3,871 chainNetFr3,900 chainNetMm10,33 chainNetMm10,132 chainNetMm10,155 chainNetMm10,188 chainNetMm10,494 chainNetMm10,871 chainNetMm10,900 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 ensemblGeneScaffold,26 ensemblGeneScaffold,54 est,174 est,309 est,328 est,337 est,402 est,480 est,512 est,526 intronEst,255 intronEst,390 intronEst,409 intronEst,418 intronEst,483 intronEst,561 intronEst,593 intronEst,607 mrna,120 mrna,255 mrna,274 mrna,283 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netFr3,30 netFr3,129 netFr3,152 netFr3,185 netFr3,491 netFr3,868 netFr3,897 netMm10,30 netMm10,129 netMm10,152 netMm10,185 netMm10,491 netMm10,868 netMm10,897 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,534 transMapEnsemblV5,562 transMapEnsemblV5,605 transMapEnsemblV5,625 transMapEstV5,503 transMapEstV5,531 transMapEstV5,574 transMapEstV5,594 transMapRefSeqV5,503 transMapRefSeqV5,531 transMapRefSeqV5,574 transMapRefSeqV5,594 transMapRnaV5,503 transMapRnaV5,531 transMapRnaV5,574 transMapRnaV5,594 transMapV5,47 transMapV5,609 transMapV5,637 transMapV5,680 transMapV5,700 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order ensemblGeneScaffold,49 gap,80 gold,111 uniprot,872 organ est,198 est,204 intronEst,279 intronEst,285 mrna,144 mrna,150 organism chainFr3,336 chainFr3,366 chainMm10,336 chainMm10,366 chainNetFr3,339 chainNetFr3,369 chainNetMm10,339 chainNetMm10,369 netFr3,336 netFr3,366 netMm10,336 netMm10,366 organisms chainFr3,913 chainMm10,913 chainNetFr3,916 chainNetMm10,916 nestedRepeats,295 netFr3,913 netMm10,913 rmsk,302 transMapEnsemblV5,160 transMapEnsemblV5,218 transMapEstV5,129 transMapEstV5,187 transMapRefSeqV5,129 transMapRefSeqV5,187 transMapRnaV5,129 transMapRnaV5,187 transMapV5,65 transMapV5,153 transMapV5,235 transMapV5,293 uniprot,998 xenoRefGene,21 organizes chainFr3,621 chainMm10,621 chainNetFr3,624 chainNetMm10,624 netFr3,621 netMm10,621 orientation chainFr3,553 chainMm10,553 chainNetFr3,556 chainNetMm10,556 cytoBandIdeo,6 gap,82 gold,113 netFr3,553 netMm10,553 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs chainFr3,290 chainMm10,290 chainNetFr3,293 chainNetMm10,293 netFr3,290 netMm10,290 transMapV5,95 ostell est,757 est,781 intronEst,841 intronEst,865 mrna,474 mrna,498 other augustusGene,208 chainFr3,24 chainFr3,418 chainFr3,511 chainMm10,24 chainMm10,418 chainMm10,511 chainNetFr3,27 chainNetFr3,421 chainNetFr3,514 chainNetMm10,27 chainNetMm10,421 chainNetMm10,514 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 gap,125 nestedRepeats,376 netFr3,24 netFr3,418 netFr3,511 netMm10,24 netMm10,418 netMm10,511 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,371 transMapEstV5,28 transMapEstV5,340 transMapRefSeqV5,28 transMapRefSeqV5,340 transMapRnaV5,28 transMapRnaV5,340 transMapV5,27 transMapV5,446 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 est,682 intronEst,763 transMapEnsemblV5,248 transMapEstV5,217 transMapRefSeqV5,217 transMapRnaV5,217 transMapV5,323 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 rmsk,124 rmsk,129 transMapEnsemblV5,559 transMapEnsemblV5,565 transMapEnsemblV5,575 transMapEnsemblV5,614 transMapEstV5,528 transMapEstV5,534 transMapEstV5,544 transMapEstV5,583 transMapRefSeqV5,528 transMapRefSeqV5,534 transMapRefSeqV5,544 transMapRefSeqV5,583 transMapRnaV5,528 transMapRnaV5,534 transMapRnaV5,544 transMapRnaV5,583 transMapV5,634 transMapV5,640 transMapV5,650 transMapV5,689 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainFr3,642 chainMm10,642 chainNetFr3,645 chainNetMm10,645 netFr3,642 netMm10,642 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside est,617 intronEst,698 uniprot,558 over chainFr3,198 chainFr3,657 chainMm10,198 chainMm10,657 chainNetFr3,201 chainNetFr3,660 chainNetMm10,201 chainNetMm10,660 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netFr3,198 netFr3,657 netMm10,198 netMm10,657 uniprot,522 uniprot,536 overlapping chainFr3,114 chainFr3,178 chainMm10,114 chainMm10,178 chainNetFr3,117 chainNetFr3,181 chainNetMm10,117 chainNetMm10,181 netFr3,114 netFr3,178 netMm10,114 netMm10,178 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainFr3,1041 chainMm10,1041 chainNetFr3,1044 chainNetMm10,1044 netFr3,1041 netMm10,1041 pack chainFr3,235 chainMm10,235 chainNetFr3,238 chainNetMm10,238 nestedRepeats,116 netFr3,235 netMm10,235 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 est,113 est,425 est,446 genscan,78 genscan,123 intronEst,194 intronEst,506 intronEst,527 mrna,59 mrna,364 mrna,385 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 xenoRefGene,191 pages chainFr3,778 chainMm10,778 chainNetFr3,781 chainNetMm10,781 netFr3,778 netMm10,778 pair gap,96 pairwise chainFr3,1019 chainFr3,1037 chainMm10,1019 chainMm10,1037 chainNetFr3,1022 chainNetFr3,1040 chainNetMm10,1022 chainNetMm10,1040 netFr3,1019 netFr3,1037 netMm10,1019 netMm10,1037 transMapEnsemblV5,339 transMapEstV5,308 transMapRefSeqV5,308 transMapRnaV5,308 transMapV5,84 transMapV5,414 paralogous transMapEnsemblV5,302 transMapEstV5,271 transMapRefSeqV5,271 transMapRnaV5,271 transMapV5,377 paralogs chainFr3,228 chainMm10,228 chainNetFr3,231 chainNetMm10,231 netFr3,228 netMm10,228 transMapV5,161 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,148 part chainFr3,276 chainMm10,276 chainNetFr3,279 chainNetMm10,279 netFr3,276 netMm10,276 particular augustusGene,234 chainFr3,200 chainMm10,200 chainNetFr3,203 chainNetMm10,203 netFr3,200 netMm10,200 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainFr3,39 chainFr3,50 chainMm10,39 chainMm10,50 chainNetFr3,42 chainNetFr3,53 chainNetMm10,42 chainNetMm10,53 netFr3,39 netFr3,50 netMm10,39 netMm10,50 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainFr3,924 chainFr3,1027 chainMm10,924 chainMm10,1027 chainNetFr3,927 chainNetFr3,1030 chainNetMm10,927 chainNetMm10,1030 netFr3,924 netFr3,1027 netMm10,924 netMm10,1027 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 est,608 intronEst,689 period microsat,65 permitted rmsk,314 ph.d chainFr3,1024 chainMm10,1024 chainNetFr3,1027 chainNetMm10,1027 netFr3,1024 netMm10,1024 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place chainFr3,797 chainMm10,797 chainNetFr3,800 chainNetMm10,800 netFr3,797 netMm10,797 placed chainFr3,839 chainMm10,839 chainNetFr3,842 chainNetMm10,842 netFr3,839 netMm10,839 places est,691 intronEst,772 mrna,407 xenoRefGene,246 plasmid est,469 intronEst,550 please ensGene,41 ensGene,160 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,811 transMapEstV5,780 transMapRefSeqV5,780 transMapRnaV5,780 transMapV5,886 pmc chainFr3,1086 chainFr3,1117 chainMm10,1086 chainMm10,1117 chainNetFr3,1089 chainNetFr3,1120 chainNetMm10,1089 chainNetMm10,1120 ensGene,206 ensemblGeneScaffold,145 est,773 est,799 est,817 intronEst,857 intronEst,883 intronEst,901 microsat,136 mrna,490 mrna,516 mrna,534 netFr3,1086 netFr3,1117 netMm10,1086 netMm10,1117 simpleRepeat,96 transMapEnsemblV5,755 transMapEnsemblV5,821 transMapEstV5,724 transMapEstV5,790 transMapRefSeqV5,724 transMapRefSeqV5,790 transMapRnaV5,724 transMapRnaV5,790 transMapV5,830 transMapV5,896 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,818 intronEst,902 mrna,535 xenoRefGene,319 pmc208784 chainFr3,1087 chainMm10,1087 chainNetFr3,1090 chainNetMm10,1090 netFr3,1087 netMm10,1087 pmc2099585 transMapEnsemblV5,756 transMapEstV5,725 transMapRefSeqV5,725 transMapRnaV5,725 transMapV5,831 pmc2134963 transMapEnsemblV5,822 transMapEstV5,791 transMapRefSeqV5,791 transMapRnaV5,791 transMapV5,897 pmc308779 est,800 intronEst,884 mrna,517 pmc3245120 uniprot,2009 pmc3531190 est,774 intronEst,858 mrna,491 pmc3965018 xenoRefGene,361 pmc430961 chainFr3,1118 chainMm10,1118 chainNetFr3,1121 chainNetMm10,1121 netFr3,1118 netMm10,1118 pmc539979 xenoRefGene,395 pmc99161 ensGene,207 ensemblGeneScaffold,146 pmid augustusGene,314 augustusGene,339 chainFr3,1046 chainFr3,1084 chainFr3,1115 chainMm10,1046 chainMm10,1084 chainMm10,1115 chainNetFr3,1049 chainNetFr3,1087 chainNetFr3,1118 chainNetMm10,1049 chainNetMm10,1087 chainNetMm10,1118 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 ensemblGeneScaffold,143 est,771 est,797 est,815 genscan,229 intronEst,855 intronEst,881 intronEst,899 microsat,134 mrna,488 mrna,514 mrna,532 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netFr3,1046 netFr3,1084 netFr3,1115 netMm10,1046 netMm10,1084 netMm10,1115 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,753 transMapEnsemblV5,785 transMapEnsemblV5,819 transMapEstV5,722 transMapEstV5,754 transMapEstV5,788 transMapRefSeqV5,722 transMapRefSeqV5,754 transMapRefSeqV5,788 transMapRnaV5,722 transMapRnaV5,754 transMapRnaV5,788 transMapV5,828 transMapV5,860 transMapV5,894 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,551 intronEst,632 rmsk,269 poly-a augustusGene,62 est,503 est,577 intronEst,584 intronEst,658 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainFr3,713 chainMm10,713 chainNetFr3,716 chainNetMm10,716 netFr3,713 netMm10,713 uniprot,610 positions uniprot,1495 possible chainFr3,412 chainMm10,412 chainNetFr3,415 chainNetMm10,415 netFr3,412 netMm10,412 uniprot,601 possibly chainFr3,289 chainMm10,289 chainNetFr3,292 chainNetMm10,292 netFr3,289 netMm10,289 simpleRepeat,18 post-alignment transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 ensemblGeneScaffold,86 genscan,73 genscan,211 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5BaseBw,80 ucscToINSDC,49 uniprot,712 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 uniprot,1654 previously chainFr3,917 chainMm10,917 chainNetFr3,920 chainNetMm10,920 netFr3,917 netMm10,917 primary unipStruct,4 uniprot,360 primed est,495 intronEst,576 primer est,482 intronEst,563 priming est,578 intronEst,659 principal gap,121 pringle transMapEnsemblV5,795 transMapEstV5,764 transMapRefSeqV5,764 transMapRnaV5,764 transMapV5,870 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainFr3,1071 chainMm10,1071 chainNetFr3,1074 chainNetMm10,1074 netFr3,1071 netMm10,1071 procedure uniprot,990 procedures gap,23 gold,25 process chainFr3,821 chainMm10,821 chainNetFr3,824 chainNetMm10,824 netFr3,821 netMm10,821 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainFr3,216 chainMm10,216 chainNetFr3,219 chainNetMm10,219 netFr3,216 netMm10,216 produced est,729 intronEst,813 mrna,446 transMapEnsemblV5,22 transMapEnsemblV5,680 transMapEnsemblV5,704 transMapEstV5,20 transMapEstV5,649 transMapEstV5,673 transMapRefSeqV5,20 transMapRefSeqV5,649 transMapRefSeqV5,673 transMapRnaV5,20 transMapRnaV5,649 transMapRnaV5,673 transMapV5,19 transMapV5,142 transMapV5,755 transMapV5,779 xenoRefGene,284 products unipChain,5 program augustusGene,21 augustusGene,257 chainFr3,612 chainFr3,653 chainFr3,791 chainFr3,844 chainFr3,876 chainFr3,952 chainFr3,955 chainMm10,612 chainMm10,653 chainMm10,791 chainMm10,844 chainMm10,876 chainMm10,952 chainMm10,955 chainNetFr3,615 chainNetFr3,656 chainNetFr3,794 chainNetFr3,847 chainNetFr3,879 chainNetFr3,955 chainNetFr3,958 chainNetMm10,615 chainNetMm10,656 chainNetMm10,794 chainNetMm10,847 chainNetMm10,879 chainNetMm10,955 chainNetMm10,958 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 nestedRepeats,30 netFr3,612 netFr3,653 netFr3,791 netFr3,844 netFr3,876 netFr3,952 netFr3,955 netMm10,612 netMm10,653 netMm10,791 netMm10,844 netMm10,876 netMm10,952 netMm10,955 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,315 transMapEstV5,284 transMapRefSeqV5,284 transMapRnaV5,284 transMapV5,390 uniprot,1529 programmatic ensGene,99 programs chainFr3,1001 chainMm10,1001 chainNetFr3,1004 chainNetMm10,1004 netFr3,1001 netMm10,1001 uniprot,1877 project ensGene,194 ensemblGeneScaffold,133 xenoRefGene,301 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,322 transMapEstV5,291 transMapRefSeqV5,291 transMapRnaV5,291 transMapV5,397 projects est,572 est,591 est,621 intronEst,653 intronEst,672 intronEst,702 transMapEnsemblV5,712 transMapEstV5,681 transMapRefSeqV5,681 transMapRnaV5,681 transMapV5,787 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 prot.bed uniprot,1931 uniprot,1933 protein unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 provide uniprot,1860 provided uniprot,817 provides gap,33 gold,35 uniprot,489 providing augustusGene,254 ensGene,153 ensemblGeneScaffold,103 genscan,175 nestedRepeats,312 rmsk,335 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudogenes chainFr3,217 chainFr3,231 chainMm10,217 chainMm10,231 chainNetFr3,220 chainNetFr3,234 chainNetMm10,220 chainNetMm10,234 netFr3,217 netFr3,231 netMm10,217 netMm10,231 uniprot,1184 psl est,57 intronEst,141 mrna,38 transMapEnsemblV5,103 transMapEstV5,72 transMapRefSeqV5,72 transMapRnaV5,72 transMapV5,178 uniprot,1479 pslcdnafilter transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 pslmap transMapEnsemblV5,314 transMapEstV5,283 transMapRefSeqV5,283 transMapRnaV5,283 transMapV5,389 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 est,740 intronEst,824 mrna,457 transMapEnsemblV5,696 transMapEstV5,665 transMapRefSeqV5,665 transMapRnaV5,665 transMapV5,771 uniprot,709 publications uniprot,38 publicly nestedRepeats,275 pull-down xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainFr3,725 chainMm10,725 chainNetFr3,728 chainNetMm10,728 netFr3,725 netMm10,725 quality est,75 mrna,56 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 query rmsk,47 rmsk,61 uniprot,1484 questions uniprot,1834 quickly mrna,341 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,152 quite simpleRepeat,45 quot chainFr3,26 chainFr3,28 chainFr3,33 chainFr3,35 chainFr3,103 chainFr3,105 chainFr3,234 chainFr3,236 chainFr3,238 chainFr3,240 chainFr3,344 chainFr3,346 chainFr3,687 chainFr3,689 chainMm10,26 chainMm10,28 chainMm10,33 chainMm10,35 chainMm10,103 chainMm10,105 chainMm10,234 chainMm10,236 chainMm10,238 chainMm10,240 chainMm10,344 chainMm10,346 chainMm10,687 chainMm10,689 chainNetFr3,29 chainNetFr3,31 chainNetFr3,36 chainNetFr3,38 chainNetFr3,106 chainNetFr3,108 chainNetFr3,237 chainNetFr3,239 chainNetFr3,241 chainNetFr3,243 chainNetFr3,347 chainNetFr3,349 chainNetFr3,690 chainNetFr3,692 chainNetMm10,29 chainNetMm10,31 chainNetMm10,36 chainNetMm10,38 chainNetMm10,106 chainNetMm10,108 chainNetMm10,237 chainNetMm10,239 chainNetMm10,241 chainNetMm10,243 chainNetMm10,347 chainNetMm10,349 chainNetMm10,690 chainNetMm10,692 est,241 est,243 est,292 est,294 est,308 est,310 est,344 est,346 est,361 est,363 gc5BaseBw,58 gc5BaseBw,62 intronEst,322 intronEst,324 intronEst,373 intronEst,375 intronEst,389 intronEst,391 intronEst,425 intronEst,427 intronEst,442 intronEst,444 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 netFr3,26 netFr3,28 netFr3,33 netFr3,35 netFr3,103 netFr3,105 netFr3,234 netFr3,236 netFr3,238 netFr3,240 netFr3,344 netFr3,346 netFr3,687 netFr3,689 netMm10,26 netMm10,28 netMm10,33 netMm10,35 netMm10,103 netMm10,105 netMm10,234 netMm10,236 netMm10,238 netMm10,240 netMm10,344 netMm10,346 netMm10,687 netMm10,689 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainFr3,1051 chainFr3,1097 chainMm10,1051 chainMm10,1097 chainNetFr3,1054 chainNetFr3,1100 chainNetMm10,1054 chainNetMm10,1100 nestedRepeats,327 netFr3,1051 netFr3,1097 netMm10,1051 netMm10,1097 rmsk,350 transMapEnsemblV5,762 transMapEstV5,731 transMapRefSeqV5,731 transMapRnaV5,731 transMapV5,837 windowmaskerSdust,99 r.s chainFr3,1016 chainMm10,1016 chainNetFr3,1019 chainNetMm10,1019 netFr3,1016 netMm10,1016 random augustusGene,119 est,574 intronEst,655 random-primed est,620 intronEst,701 raney uniprot,1960 range gap,147 gap,162 nestedRepeats,227 nestedRepeats,236 transMapEnsemblV5,658 transMapEstV5,627 transMapRefSeqV5,627 transMapRnaV5,627 transMapV5,733 uniprot,1809 ranked chainFr3,788 chainMm10,788 chainNetFr3,791 chainNetMm10,791 netFr3,788 netMm10,788 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 rather est,575 intronEst,656 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw transMapEnsemblV5,521 transMapEstV5,490 transMapRefSeqV5,490 transMapRnaV5,490 transMapV5,596 uniprot,1708 rc chainFr3,1099 chainMm10,1099 chainNetFr3,1102 chainNetMm10,1102 netFr3,1099 netMm10,1099 rmsk,200 read est,473 gap,95 intronEst,554 rearrangement chainFr3,295 chainFr3,498 chainFr3,1064 chainMm10,295 chainMm10,498 chainMm10,1064 chainNetFr3,298 chainNetFr3,501 chainNetFr3,1067 chainNetMm10,298 chainNetMm10,501 chainNetMm10,1067 netFr3,295 netFr3,498 netFr3,1064 netMm10,295 netMm10,498 netMm10,1064 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 reasonably est,541 est,564 intronEst,622 intronEst,645 recently uniprot,1186 reciprocal transMapEnsemblV5,241 transMapEstV5,210 transMapRefSeqV5,210 transMapRnaV5,210 transMapV5,66 transMapV5,316 record uniprot,496 xenoRefGene,67 reduced intronEst,106 refer ensGene,42 ensemblGeneScaffold,87 genscan,144 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainFr3,1014 chainMm10,1014 chainNetFr3,1017 chainNetMm10,1017 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 ensemblGeneScaffold,95 ensemblGeneScaffold,106 est,746 genscan,152 genscan,179 intronEst,830 microsat,113 mrna,463 nestedRepeats,66 nestedRepeats,323 netFr3,1014 netMm10,1014 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,713 transMapEstV5,682 transMapRefSeqV5,682 transMapRnaV5,682 transMapV5,788 uniprot,1984 windowmaskerSdust,89 xenoRefGene,302 refgene transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,2 transMapRefSeqV5,564 transMapRnaV5,564 transMapV5,670 reflects rmsk,213 refseq transMapEnsemblV5,170 transMapEnsemblV5,707 transMapEstV5,139 transMapEstV5,676 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,139 transMapRefSeqV5,676 transMapRnaV5,139 transMapRnaV5,676 transMapV5,245 transMapV5,782 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region chainFr3,201 chainFr3,401 chainMm10,201 chainMm10,401 chainNetFr3,204 chainNetFr3,404 chainNetMm10,204 chainNetMm10,404 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netFr3,201 netFr3,401 netMm10,201 netMm10,401 uniprot,312 regions augustusGene,76 chainFr3,16 chainFr3,136 chainFr3,288 chainMm10,16 chainMm10,136 chainMm10,288 chainNetFr3,19 chainNetFr3,139 chainNetFr3,291 chainNetMm10,19 chainNetMm10,139 chainNetMm10,291 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netFr3,16 netFr3,136 netFr3,288 netMm10,16 netMm10,136 netMm10,288 simpleRepeat,39 transMapEnsemblV5,303 transMapEnsemblV5,604 transMapEstV5,272 transMapEstV5,573 transMapRefSeqV5,272 transMapRefSeqV5,573 transMapRnaV5,272 transMapRnaV5,573 transMapV5,378 transMapV5,679 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,75 uniprot,551 relationship chainFr3,854 chainMm10,854 chainNetFr3,857 chainNetMm10,857 est,96 intronEst,177 netFr3,854 netMm10,854 relative chainFr3,870 chainMm10,870 chainNetFr3,873 chainNetMm10,873 gap,79 gold,110 netFr3,870 netMm10,870 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,241 mrna,106 uniprot,681 remain uniprot,1189 remaining chainFr3,693 chainMm10,693 chainNetFr3,696 chainNetMm10,696 netFr3,693 netMm10,693 removed chainFr3,583 chainMm10,583 chainNetFr3,586 chainNetMm10,586 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netFr3,583 netMm10,583 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,308 transMapEstV5,277 transMapRefSeqV5,277 transMapRnaV5,277 transMapV5,383 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainFr3,951 chainMm10,951 chainNetFr3,954 chainNetMm10,954 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netFr3,951 netMm10,951 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainFr3,943 chainMm10,943 chainNetFr3,946 chainNetMm10,946 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netFr3,943 netMm10,943 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 rmsk,374 uniprot,1400 represent chainFr3,134 chainFr3,162 chainFr3,448 chainFr3,453 chainMm10,134 chainMm10,162 chainMm10,448 chainMm10,453 chainNetFr3,137 chainNetFr3,165 chainNetFr3,451 chainNetFr3,456 chainNetMm10,137 chainNetMm10,165 chainNetMm10,451 chainNetMm10,456 est,41 intronEst,52 netFr3,134 netFr3,162 netFr3,448 netFr3,453 netMm10,134 netMm10,162 netMm10,448 netMm10,453 represented gap,70 rmsk,49 representing gap,113 reproducibility uniprot,1645 requiring intronEst,94 res chainFr3,1109 chainMm10,1109 chainNetFr3,1112 chainNetMm10,1112 ensGene,197 ensemblGeneScaffold,136 est,764 est,789 est,809 intronEst,848 intronEst,873 intronEst,893 microsat,127 mrna,481 mrna,506 mrna,526 netFr3,1109 netMm10,1109 simpleRepeat,87 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 uniprot,1999 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research nestedRepeats,54 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 result chainFr3,175 chainMm10,175 chainNetFr3,178 chainNetMm10,178 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netFr3,175 netMm10,175 transMapEnsemblV5,507 transMapEstV5,476 transMapRefSeqV5,476 transMapRnaV5,476 transMapV5,582 uniprot,798 uniprot,1065 uniprot,1170 resulting chainFr3,602 chainMm10,602 chainNetFr3,605 chainNetMm10,605 netFr3,602 netMm10,602 transMapEnsemblV5,81 transMapEnsemblV5,337 transMapEnsemblV5,349 transMapEnsemblV5,494 transMapEstV5,50 transMapEstV5,306 transMapEstV5,318 transMapEstV5,463 transMapRefSeqV5,50 transMapRefSeqV5,306 transMapRefSeqV5,318 transMapRefSeqV5,463 transMapRnaV5,50 transMapRnaV5,306 transMapRnaV5,318 transMapRnaV5,463 transMapV5,51 transMapV5,412 transMapV5,424 transMapV5,569 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,583 intronEst,664 retroposons rmsk,173 reverse est,458 est,492 est,509 intronEst,539 intronEst,573 intronEst,590 review xenoRefGene,64 reviewed xenoRefGene,74 riestra uniprot,1972 rna est,104 est,452 intronEst,185 intronEst,533 rmsk,186 rmsk,189 transMapEnsemblV5,598 transMapEstV5,567 transMapRefSeqV5,567 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,567 transMapV5,673 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainFr3,991 chainMm10,991 chainNetFr3,994 chainNetMm10,994 nestedRepeats,307 netFr3,991 netMm10,991 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainFr3,940 chainMm10,940 chainNetFr3,943 chainNetMm10,943 netFr3,940 netMm10,940 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainFr3,656 chainMm10,656 chainNetFr3,659 chainNetMm10,659 netFr3,656 netMm10,656 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainFr3,1059 chainFr3,1076 chainFr3,1089 chainMm10,1059 chainMm10,1076 chainMm10,1089 chainNetFr3,1062 chainNetFr3,1079 chainNetFr3,1092 chainNetMm10,1062 chainNetMm10,1079 chainNetMm10,1092 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netFr3,1059 netFr3,1076 netFr3,1089 netMm10,1059 netMm10,1076 netMm10,1089 rmsk,18 rmsk,293 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same chainFr3,527 chainFr3,542 chainMm10,527 chainMm10,542 chainNetFr3,530 chainNetFr3,545 chainNetMm10,530 chainNetMm10,545 nestedRepeats,143 netFr3,527 netFr3,542 netMm10,527 netMm10,542 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,789 transMapEstV5,758 transMapRefSeqV5,758 transMapRnaV5,758 transMapV5,864 santa chainFr3,964 chainFr3,1009 chainMm10,964 chainMm10,1009 chainNetFr3,967 chainNetFr3,1012 chainNetMm10,967 chainNetMm10,1012 netFr3,964 netFr3,1009 netMm10,964 netMm10,1009 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers est,759 intronEst,843 mrna,476 scaffold ensemblGeneScaffold,5 ensemblGeneScaffold,19 ensemblGeneScaffold,42 ensemblGeneScaffold,55 gold,81 gold,119 scaffolds ensemblGeneScaffold,27 ensemblGeneScaffold,58 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainFr3,931 chainFr3,1088 chainMm10,931 chainMm10,1088 chainNetFr3,934 chainNetFr3,1091 chainNetMm10,934 chainNetMm10,1091 netFr3,931 netFr3,1088 netMm10,931 netMm10,1088 sci chainFr3,1074 chainMm10,1074 chainNetFr3,1077 chainNetMm10,1077 netFr3,1074 netMm10,1074 science genscan,203 scientific uniprot,37 scientists est,744 intronEst,828 mrna,461 transMapEnsemblV5,700 transMapEstV5,669 transMapRefSeqV5,669 transMapRnaV5,669 transMapV5,775 xenoRefGene,293 score chainFr3,685 chainMm10,685 chainNetFr3,688 chainNetMm10,688 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netFr3,685 netMm10,685 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainFr3,78 chainFr3,88 chainFr3,664 chainFr3,681 chainFr3,1036 chainMm10,78 chainMm10,88 chainMm10,664 chainMm10,681 chainMm10,1036 chainNetFr3,81 chainNetFr3,91 chainNetFr3,667 chainNetFr3,684 chainNetFr3,1039 chainNetMm10,81 chainNetMm10,91 chainNetMm10,667 chainNetMm10,684 chainNetMm10,1039 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netFr3,78 netFr3,88 netFr3,664 netFr3,681 netFr3,1036 netMm10,78 netMm10,88 netMm10,664 netMm10,681 netMm10,1036 scott chainFr3,930 chainMm10,930 chainNetFr3,933 chainNetMm10,933 netFr3,930 netMm10,930 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,801 transMapEstV5,770 transMapRefSeqV5,770 transMapRnaV5,770 transMapV5,876 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 ensemblGeneScaffold,96 genscan,153 nestedRepeats,67 rmsk,103 uniprot,897 sections chainFr3,811 chainMm10,811 chainNetFr3,814 chainNetMm10,814 netFr3,811 netMm10,811 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 intronEst,124 microsat,101 nestedRepeats,296 nestedRepeats,370 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,231 transMapEnsemblV5,574 transMapEstV5,200 transMapEstV5,543 transMapRefSeqV5,200 transMapRefSeqV5,543 transMapRnaV5,200 transMapRnaV5,543 transMapV5,306 transMapV5,649 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 ensemblGeneScaffold,38 select genscan,90 xenoRefGene,162 selected est,296 est,312 est,365 intronEst,377 intronEst,393 intronEst,446 mrna,242 mrna,258 mrna,311 transMapEnsemblV5,214 transMapEnsemblV5,251 transMapEnsemblV5,262 transMapEnsemblV5,330 transMapEstV5,183 transMapEstV5,220 transMapEstV5,231 transMapEstV5,299 transMapRefSeqV5,183 transMapRefSeqV5,220 transMapRefSeqV5,231 transMapRefSeqV5,299 transMapRnaV5,183 transMapRnaV5,220 transMapRnaV5,231 transMapRnaV5,299 transMapV5,289 transMapV5,326 transMapV5,337 transMapV5,405 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,148 sep chainFr3,1079 chainMm10,1079 chainNetFr3,1082 chainNetMm10,1082 nestedRepeats,356 netFr3,1079 netMm10,1079 rmsk,379 separated est,267 intronEst,348 mrna,213 seq unipConflict,1 seq_region.txt ensemblGeneScaffold,75 sequence augustusGene,32 augustusGene,70 chainFr3,169 chainFr3,298 chainFr3,1039 chainMm10,169 chainMm10,298 chainMm10,1039 chainNetFr3,172 chainNetFr3,301 chainNetFr3,1042 chainNetMm10,172 chainNetMm10,301 chainNetMm10,1042 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 est,21 est,92 est,401 est,410 est,584 est,722 est,734 est,741 gap,55 gold,54 gold,158 intronEst,22 intronEst,75 intronEst,173 intronEst,482 intronEst,491 intronEst,665 intronEst,803 intronEst,818 intronEst,825 mrna,347 mrna,438 mrna,451 mrna,458 netFr3,169 netFr3,298 netFr3,1039 netMm10,169 netMm10,298 netMm10,1039 rmsk,48 rmsk,62 transMapEnsemblV5,129 transMapEnsemblV5,690 transMapEnsemblV5,697 transMapEstV5,98 transMapEstV5,659 transMapEstV5,666 transMapRefSeqV5,98 transMapRefSeqV5,659 transMapRefSeqV5,666 transMapRnaV5,98 transMapRnaV5,659 transMapRnaV5,666 transMapV5,204 transMapV5,765 transMapV5,772 ucscToINSDC,7 ucscToINSDC,29 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequenced windowmaskerSdust,104 sequences est,32 est,603 est,611 gold,13 intronEst,43 intronEst,684 intronEst,692 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 xenoRefGene,348 sequencing chainFr3,893 chainMm10,893 chainNetFr3,896 chainNetMm10,896 cytoBandIdeo,9 ensemblGeneScaffold,9 gap,6 gc5BaseBw,10 gold,7 netFr3,893 netMm10,893 ucscToINSDC,12 server ensGene,144 transMapEnsemblV5,561 transMapEstV5,530 transMapRefSeqV5,530 transMapRnaV5,530 transMapV5,636 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set transMapEnsemblV5,281 transMapEstV5,250 transMapRefSeqV5,250 transMapRnaV5,250 transMapV5,356 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several est,426 intronEst,507 mrna,365 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 shade nestedRepeats,194 shaded est,70 mrna,51 nestedRepeats,182 shades nestedRepeats,202 shading intronEst,149 nestedRepeats,240 rmsk,208 rmsk,239 xenoRefGene,59 short rmsk,153 uniprot,460 uniprot,978 shotgun gap,156 gold,152 should est,332 est,636 intronEst,413 intronEst,717 mrna,278 show intronEst,31 intronEst,64 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown chainFr3,41 chainFr3,54 chainMm10,41 chainMm10,54 chainNetFr3,44 chainNetFr3,57 chainNetMm10,44 chainNetMm10,57 est,150 gold,102 intronEst,231 microsat,48 mrna,96 netFr3,41 netFr3,54 netMm10,41 netMm10,54 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainFr3,15 chainFr3,62 chainFr3,267 chainMm10,15 chainMm10,62 chainMm10,267 chainNetFr3,18 chainNetFr3,65 chainNetFr3,270 chainNetMm10,18 chainNetMm10,65 chainNetMm10,270 ensemblGeneScaffold,13 est,15 gap,10 gc5BaseBw,16 genscan,13 gold,11 intronEst,16 mrna,16 nestedRepeats,17 nestedRepeats,81 netFr3,15 netFr3,62 netFr3,267 netMm10,15 netMm10,62 netMm10,267 uniprot,14 uniprot,484 xenoRefGene,14 side est,599 gap,88 intronEst,680 siepel transMapEnsemblV5,714 transMapEstV5,683 transMapRefSeqV5,683 transMapRnaV5,683 transMapV5,789 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 signs intronEst,32 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainFr3,101 chainMm10,101 chainNetFr3,104 chainNetMm10,104 netFr3,101 netMm10,101 since chainFr3,576 chainMm10,576 chainNetFr3,579 chainNetMm10,579 netFr3,576 netMm10,576 uniprot,1383 sine rmsk,157 single chainFr3,128 chainFr3,137 chainFr3,626 chainFr3,631 chainMm10,128 chainMm10,137 chainMm10,626 chainMm10,631 chainNetFr3,131 chainNetFr3,140 chainNetFr3,629 chainNetFr3,634 chainNetMm10,131 chainNetMm10,140 chainNetMm10,629 chainNetMm10,634 est,633 est,686 intronEst,714 intronEst,767 mrna,402 nestedRepeats,178 netFr3,128 netFr3,137 netFr3,626 netFr3,631 netMm10,128 netMm10,137 netMm10,626 netMm10,631 transMapEnsemblV5,480 transMapEstV5,449 transMapRefSeqV5,449 transMapRnaV5,449 transMapV5,555 uniprot,141 xenoRefGene,241 single-lined chainFr3,210 chainMm10,210 chainNetFr3,213 chainNetMm10,213 netFr3,210 netMm10,210 single-read est,31 intronEst,42 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,146 gap,161 skepticism est,641 intronEst,722 sm xenoRefGene,325 smallsize chainFr3,711 chainMm10,711 chainNetFr3,714 chainNetMm10,714 netFr3,711 netMm10,711 smit chainFr3,948 chainFr3,1092 chainMm10,948 chainMm10,1092 chainNetFr3,951 chainNetFr3,1095 chainNetMm10,951 chainNetMm10,1095 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netFr3,948 netFr3,1092 netMm10,948 netMm10,1092 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainFr3,440 chainMm10,440 chainNetFr3,443 chainNetMm10,443 netFr3,440 netMm10,440 uniprot,1135 uniprot,1430 soft-masked rmsk,305 software nestedRepeats,255 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 est,158 est,555 est,571 est,674 intronEst,239 intronEst,636 intronEst,652 intronEst,755 mrna,104 nestedRepeats,207 rmsk,105 rmsk,268 transMapEnsemblV5,299 transMapEnsemblV5,309 transMapEstV5,268 transMapEstV5,278 transMapRefSeqV5,268 transMapRefSeqV5,278 transMapRnaV5,268 transMapRnaV5,278 transMapV5,374 transMapV5,384 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainFr3,780 chainMm10,780 chainNetFr3,783 chainNetMm10,783 netFr3,780 netMm10,780 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 transMapEnsemblV5,153 transMapEnsemblV5,325 transMapEnsemblV5,343 transMapEnsemblV5,407 transMapEnsemblV5,432 transMapEnsemblV5,623 transMapEnsemblV5,637 transMapEstV5,122 transMapEstV5,294 transMapEstV5,312 transMapEstV5,376 transMapEstV5,401 transMapEstV5,592 transMapEstV5,606 transMapRefSeqV5,122 transMapRefSeqV5,294 transMapRefSeqV5,312 transMapRefSeqV5,376 transMapRefSeqV5,401 transMapRefSeqV5,592 transMapRefSeqV5,606 transMapRnaV5,122 transMapRnaV5,294 transMapRnaV5,312 transMapRnaV5,376 transMapRnaV5,401 transMapRnaV5,592 transMapRnaV5,606 transMapV5,228 transMapV5,400 transMapV5,418 transMapV5,482 transMapV5,507 transMapV5,698 transMapV5,712 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space est,270 intronEst,351 mrna,216 uniprot,1990 spaces gold,100 span chainFr3,399 chainMm10,399 chainNetFr3,402 chainNetMm10,402 netFr3,399 netMm10,399 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainFr3,118 chainFr3,172 chainFr3,191 chainFr3,899 chainMm10,118 chainMm10,172 chainMm10,191 chainMm10,899 chainNetFr3,121 chainNetFr3,175 chainNetFr3,194 chainNetFr3,902 chainNetMm10,121 chainNetMm10,175 chainNetMm10,194 chainNetMm10,902 netFr3,118 netFr3,172 netFr3,191 netFr3,899 netMm10,118 netMm10,172 netMm10,191 netMm10,899 transMapEnsemblV5,32 transMapEnsemblV5,271 transMapEstV5,30 transMapEstV5,240 transMapRefSeqV5,30 transMapRefSeqV5,240 transMapRnaV5,30 transMapRnaV5,240 transMapV5,29 transMapV5,79 transMapV5,115 transMapV5,346 species-specific augustusGene,156 specific est,197 gap,34 gold,36 intronEst,278 mrna,143 simpleRepeat,53 specification gap,60 gold,59 splice augustusGene,53 genscan,156 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 transMapEnsemblV5,176 transMapEstV5,17 transMapEstV5,145 transMapRefSeqV5,145 transMapRnaV5,145 transMapV5,251 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,95 split chainFr3,581 chainMm10,581 chainNetFr3,584 chainNetMm10,584 netFr3,581 netMm10,581 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,424 transMapEstV5,393 transMapRefSeqV5,393 transMapRnaV5,393 transMapV5,499 srprna rmsk,194 staff uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,757 transMapEstV5,726 transMapRefSeqV5,726 transMapRnaV5,726 transMapV5,832 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 est,563 intronEst,644 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,125 uniprot,209 uniprot,1821 state chainFr3,925 chainFr3,1028 chainMm10,925 chainMm10,1028 chainNetFr3,928 chainNetFr3,1031 chainNetMm10,928 chainNetMm10,1031 netFr3,925 netFr3,1028 netMm10,925 netMm10,1028 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 transMapEnsemblV5,675 transMapEstV5,644 transMapRefSeqV5,644 transMapRnaV5,644 transMapV5,750 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,307 transMapEstV5,276 transMapRefSeqV5,276 transMapRnaV5,276 transMapV5,382 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 storage chainFr3,982 chainMm10,982 chainNetFr3,985 chainNetMm10,985 netFr3,982 netMm10,982 stored transMapEnsemblV5,544 transMapEstV5,513 transMapRefSeqV5,513 transMapRnaV5,513 transMapV5,619 uniprot,1733 strand chainFr3,250 chainMm10,250 chainNetFr3,253 chainNetMm10,253 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 est,77 intronEst,158 nestedRepeats,144 nestedRepeats,155 netFr3,250 netMm10,250 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,120 strings gap,132 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainFr3,293 chainMm10,293 chainNetFr3,296 chainNetMm10,296 netFr3,293 netMm10,293 subcellular uniprot,553 submitted est,736 intronEst,820 mrna,453 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 submodel augustusGene,331 subsections chainFr3,646 chainMm10,646 chainNetFr3,649 chainNetMm10,649 netFr3,646 netMm10,646 subsequent transMapEnsemblV5,442 transMapEstV5,411 transMapRefSeqV5,411 transMapRnaV5,411 transMapV5,517 subset est,136 intronEst,217 microsat,54 mrna,82 transMapEnsemblV5,208 transMapEstV5,177 transMapRefSeqV5,177 transMapRnaV5,177 transMapV5,283 substantial chainFr3,168 chainMm10,168 chainNetFr3,171 chainNetMm10,171 netFr3,168 netMm10,168 subtrack uniprot,411 subtracks chainFr3,29 chainFr3,36 chainMm10,29 chainMm10,36 chainNetFr3,32 chainNetFr3,39 chainNetMm10,32 chainNetMm10,39 netFr3,29 netFr3,36 netMm10,29 netMm10,36 uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,593 intronEst,674 such chainFr3,860 chainMm10,860 chainNetFr3,863 chainNetMm10,863 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netFr3,860 netMm10,860 uniprot,306 suffix transMapEnsemblV5,401 transMapEstV5,370 transMapRefSeqV5,370 transMapRnaV5,370 transMapV5,476 uniprot,1255 suitable uniprot,1868 suppl augustusGene,336 supported gap,93 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainFr3,1042 chainMm10,1042 chainNetFr3,1045 chainNetMm10,1045 netFr3,1042 netMm10,1042 syn chainFr3,523 chainMm10,523 chainNetFr3,526 chainNetMm10,526 netFr3,523 netMm10,523 transMapEnsemblV5,255 transMapEstV5,224 transMapRefSeqV5,224 transMapRnaV5,224 transMapV5,330 syntenic chainFr3,287 chainFr3,867 chainMm10,287 chainMm10,867 chainNetFr3,290 chainNetFr3,870 chainNetMm10,290 chainNetMm10,870 netFr3,287 netFr3,867 netMm10,287 netMm10,867 transMapEnsemblV5,237 transMapEnsemblV5,517 transMapEstV5,206 transMapEstV5,486 transMapRefSeqV5,206 transMapRefSeqV5,486 transMapRnaV5,206 transMapRnaV5,486 transMapV5,312 transMapV5,592 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,768 transMapEstV5,45 transMapEstV5,737 transMapRefSeqV5,45 transMapRefSeqV5,737 transMapRnaV5,45 transMapRnaV5,737 transMapV5,44 transMapV5,843 synteny chainFr3,32 chainMm10,32 chainNetFr3,35 chainNetMm10,35 netFr3,32 netMm10,32 transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 synteny-filtered transMapV5,83 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainFr3,79 chainMm10,79 chainNetFr3,82 chainNetMm10,82 netFr3,79 netMm10,79 transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1353 uniprot,1784 systems chainFr3,89 chainMm10,89 chainNetFr3,92 chainNetMm10,92 netFr3,89 netMm10,89 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 ensemblGeneScaffold,108 ensemblGeneScaffold,120 ensemblGeneScaffold,126 xenoRefGene,365 t-100-25-9091 chainFr3,679 chainMm10,679 chainNetFr3,682 chainNetMm10,682 netFr3,679 netMm10,679 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 est,222 est,225 est,244 intronEst,303 intronEst,306 intronEst,325 mrna,168 mrna,171 mrna,190 transMapEnsemblV5,532 transMapEstV5,501 transMapRefSeqV5,501 transMapRnaV5,501 transMapV5,607 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 ensemblGeneScaffold,72 uniprot,1301 tablesize chainFr3,709 chainMm10,709 chainNetFr3,712 chainNetMm10,712 netFr3,709 netMm10,709 tags est,22 intronEst,23 tail est,504 intronEst,585 taken est,475 intronEst,556 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 targeted transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 task est,164 intronEst,245 mrna,110 tatusova xenoRefGene,364 tblastn uniprot,1476 techniques est,569 intronEst,650 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term est,171 intronEst,252 mrna,117 terminal rmsk,167 terms est,215 est,261 intronEst,296 intronEst,342 mrna,161 mrna,207 text est,178 est,218 est,258 intronEst,259 intronEst,299 intronEst,339 mrna,124 mrna,164 mrna,204 uniprot,1763 tgap chainFr3,737 chainMm10,737 chainNetFr3,740 chainNetMm10,740 netFr3,737 netMm10,737 th transMapEnsemblV5,796 transMapEstV5,765 transMapRefSeqV5,765 transMapRnaV5,765 transMapV5,871 than chainFr3,84 chainFr3,512 chainMm10,84 chainMm10,512 chainNetFr3,87 chainNetFr3,515 chainNetMm10,87 chainNetMm10,515 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 est,283 est,576 intronEst,364 intronEst,657 mrna,229 nestedRepeats,213 nestedRepeats,271 netFr3,84 netFr3,512 netMm10,84 netMm10,512 transMapEnsemblV5,225 transMapEnsemblV5,376 transMapEstV5,194 transMapEstV5,345 transMapRefSeqV5,194 transMapRefSeqV5,345 transMapRnaV5,194 transMapRnaV5,345 transMapV5,108 transMapV5,149 transMapV5,300 transMapV5,451 xenoRefGene,23 xenoRefGene,235 thank ensGene,150 thanks augustusGene,248 ensemblGeneScaffold,99 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that chainFr3,20 chainFr3,45 chainFr3,80 chainFr3,141 chainFr3,166 chainFr3,371 chainFr3,398 chainFr3,420 chainFr3,572 chainFr3,830 chainFr3,841 chainMm10,20 chainMm10,45 chainMm10,80 chainMm10,141 chainMm10,166 chainMm10,371 chainMm10,398 chainMm10,420 chainMm10,572 chainMm10,830 chainMm10,841 chainNetFr3,23 chainNetFr3,48 chainNetFr3,83 chainNetFr3,144 chainNetFr3,169 chainNetFr3,374 chainNetFr3,401 chainNetFr3,423 chainNetFr3,575 chainNetFr3,833 chainNetFr3,844 chainNetMm10,23 chainNetMm10,48 chainNetMm10,83 chainNetMm10,144 chainNetMm10,169 chainNetMm10,374 chainNetMm10,401 chainNetMm10,423 chainNetMm10,575 chainNetMm10,833 chainNetMm10,844 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 ensemblGeneScaffold,43 est,39 est,66 est,120 est,227 est,251 est,299 est,314 est,331 est,355 est,373 est,390 est,405 est,659 est,680 gap,135 genscan,141 gold,75 gold,145 intronEst,6 intronEst,30 intronEst,50 intronEst,201 intronEst,308 intronEst,332 intronEst,380 intronEst,395 intronEst,412 intronEst,436 intronEst,454 intronEst,471 intronEst,486 intronEst,740 intronEst,761 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 nestedRepeats,265 nestedRepeats,273 netFr3,20 netFr3,45 netFr3,80 netFr3,141 netFr3,166 netFr3,371 netFr3,398 netFr3,420 netFr3,572 netFr3,830 netFr3,841 netMm10,20 netMm10,45 netMm10,80 netMm10,141 netMm10,166 netMm10,371 netMm10,398 netMm10,420 netMm10,572 netMm10,830 netMm10,841 rmsk,42 rmsk,259 transMapEnsemblV5,118 transMapEnsemblV5,194 transMapEnsemblV5,500 transMapEstV5,87 transMapEstV5,163 transMapEstV5,469 transMapRefSeqV5,87 transMapRefSeqV5,163 transMapRefSeqV5,469 transMapRnaV5,87 transMapRnaV5,163 transMapRnaV5,469 transMapV5,193 transMapV5,269 transMapV5,575 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainFr3,18 chainFr3,37 chainFr3,59 chainFr3,71 chainFr3,119 chainFr3,132 chainFr3,149 chainFr3,156 chainFr3,203 chainFr3,207 chainFr3,233 chainFr3,243 chainFr3,248 chainFr3,256 chainFr3,264 chainFr3,268 chainFr3,278 chainFr3,296 chainFr3,305 chainFr3,319 chainFr3,334 chainFr3,340 chainFr3,343 chainFr3,358 chainFr3,364 chainFr3,368 chainFr3,388 chainFr3,394 chainFr3,408 chainFr3,426 chainFr3,443 chainFr3,446 chainFr3,451 chainFr3,464 chainFr3,477 chainFr3,479 chainFr3,486 chainFr3,489 chainFr3,496 chainFr3,502 chainFr3,515 chainFr3,526 chainFr3,530 chainFr3,533 chainFr3,541 chainFr3,545 chainFr3,551 chainFr3,562 chainFr3,565 chainFr3,577 chainFr3,585 chainFr3,587 chainFr3,595 chainFr3,601 chainFr3,610 chainFr3,613 chainFr3,644 chainFr3,649 chainFr3,658 chainFr3,662 chainFr3,669 chainFr3,692 chainFr3,700 chainFr3,770 chainFr3,774 chainFr3,782 chainFr3,786 chainFr3,790 chainFr3,798 chainFr3,843 chainFr3,853 chainFr3,872 chainFr3,875 chainFr3,887 chainFr3,911 chainFr3,953 chainFr3,959 chainFr3,977 chainFr3,984 chainFr3,996 chainFr3,1005 chainFr3,1026 chainFr3,1066 chainMm10,18 chainMm10,37 chainMm10,59 chainMm10,71 chainMm10,119 chainMm10,132 chainMm10,149 chainMm10,156 chainMm10,203 chainMm10,207 chainMm10,233 chainMm10,243 chainMm10,248 chainMm10,256 chainMm10,264 chainMm10,268 chainMm10,278 chainMm10,296 chainMm10,305 chainMm10,319 chainMm10,334 chainMm10,340 chainMm10,343 chainMm10,358 chainMm10,364 chainMm10,368 chainMm10,388 chainMm10,394 chainMm10,408 chainMm10,426 chainMm10,443 chainMm10,446 chainMm10,451 chainMm10,464 chainMm10,477 chainMm10,479 chainMm10,486 chainMm10,489 chainMm10,496 chainMm10,502 chainMm10,515 chainMm10,526 chainMm10,530 chainMm10,533 chainMm10,541 chainMm10,545 chainMm10,551 chainMm10,562 chainMm10,565 chainMm10,577 chainMm10,585 chainMm10,587 chainMm10,595 chainMm10,601 chainMm10,610 chainMm10,613 chainMm10,644 chainMm10,649 chainMm10,658 chainMm10,662 chainMm10,669 chainMm10,692 chainMm10,700 chainMm10,770 chainMm10,774 chainMm10,782 chainMm10,786 chainMm10,790 chainMm10,798 chainMm10,843 chainMm10,853 chainMm10,872 chainMm10,875 chainMm10,887 chainMm10,911 chainMm10,953 chainMm10,959 chainMm10,977 chainMm10,984 chainMm10,996 chainMm10,1005 chainMm10,1026 chainMm10,1066 chainNetFr3,21 chainNetFr3,40 chainNetFr3,62 chainNetFr3,74 chainNetFr3,122 chainNetFr3,135 chainNetFr3,152 chainNetFr3,159 chainNetFr3,206 chainNetFr3,210 chainNetFr3,236 chainNetFr3,246 chainNetFr3,251 chainNetFr3,259 chainNetFr3,267 chainNetFr3,271 chainNetFr3,281 chainNetFr3,299 chainNetFr3,308 chainNetFr3,322 chainNetFr3,337 chainNetFr3,343 chainNetFr3,346 chainNetFr3,361 chainNetFr3,367 chainNetFr3,371 chainNetFr3,391 chainNetFr3,397 chainNetFr3,411 chainNetFr3,429 chainNetFr3,446 chainNetFr3,449 chainNetFr3,454 chainNetFr3,467 chainNetFr3,480 chainNetFr3,482 chainNetFr3,489 chainNetFr3,492 chainNetFr3,499 chainNetFr3,505 chainNetFr3,518 chainNetFr3,529 chainNetFr3,533 chainNetFr3,536 chainNetFr3,544 chainNetFr3,548 chainNetFr3,554 chainNetFr3,565 chainNetFr3,568 chainNetFr3,580 chainNetFr3,588 chainNetFr3,590 chainNetFr3,598 chainNetFr3,604 chainNetFr3,613 chainNetFr3,616 chainNetFr3,647 chainNetFr3,652 chainNetFr3,661 chainNetFr3,665 chainNetFr3,672 chainNetFr3,695 chainNetFr3,703 chainNetFr3,773 chainNetFr3,777 chainNetFr3,785 chainNetFr3,789 chainNetFr3,793 chainNetFr3,801 chainNetFr3,846 chainNetFr3,856 chainNetFr3,875 chainNetFr3,878 chainNetFr3,890 chainNetFr3,914 chainNetFr3,956 chainNetFr3,962 chainNetFr3,980 chainNetFr3,987 chainNetFr3,999 chainNetFr3,1008 chainNetFr3,1029 chainNetFr3,1069 chainNetMm10,21 chainNetMm10,40 chainNetMm10,62 chainNetMm10,74 chainNetMm10,122 chainNetMm10,135 chainNetMm10,152 chainNetMm10,159 chainNetMm10,206 chainNetMm10,210 chainNetMm10,236 chainNetMm10,246 chainNetMm10,251 chainNetMm10,259 chainNetMm10,267 chainNetMm10,271 chainNetMm10,281 chainNetMm10,299 chainNetMm10,308 chainNetMm10,322 chainNetMm10,337 chainNetMm10,343 chainNetMm10,346 chainNetMm10,361 chainNetMm10,367 chainNetMm10,371 chainNetMm10,391 chainNetMm10,397 chainNetMm10,411 chainNetMm10,429 chainNetMm10,446 chainNetMm10,449 chainNetMm10,454 chainNetMm10,467 chainNetMm10,480 chainNetMm10,482 chainNetMm10,489 chainNetMm10,492 chainNetMm10,499 chainNetMm10,505 chainNetMm10,518 chainNetMm10,529 chainNetMm10,533 chainNetMm10,536 chainNetMm10,544 chainNetMm10,548 chainNetMm10,554 chainNetMm10,565 chainNetMm10,568 chainNetMm10,580 chainNetMm10,588 chainNetMm10,590 chainNetMm10,598 chainNetMm10,604 chainNetMm10,613 chainNetMm10,616 chainNetMm10,647 chainNetMm10,652 chainNetMm10,661 chainNetMm10,665 chainNetMm10,672 chainNetMm10,695 chainNetMm10,703 chainNetMm10,773 chainNetMm10,777 chainNetMm10,785 chainNetMm10,789 chainNetMm10,793 chainNetMm10,801 chainNetMm10,846 chainNetMm10,856 chainNetMm10,875 chainNetMm10,878 chainNetMm10,890 chainNetMm10,914 chainNetMm10,956 chainNetMm10,962 chainNetMm10,980 chainNetMm10,987 chainNetMm10,999 chainNetMm10,1008 chainNetMm10,1029 chainNetMm10,1069 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 ensemblGeneScaffold,14 ensemblGeneScaffold,22 ensemblGeneScaffold,40 ensemblGeneScaffold,51 ensemblGeneScaffold,69 ensemblGeneScaffold,80 ensemblGeneScaffold,94 ensemblGeneScaffold,129 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,277 est,287 est,319 est,326 est,340 est,349 est,357 est,366 est,375 est,392 est,399 est,408 est,419 est,440 est,463 est,477 est,491 est,502 est,508 est,518 est,522 est,533 est,537 est,544 est,553 est,557 est,567 est,587 est,613 est,619 est,654 est,660 est,692 est,695 est,711 est,720 est,738 est,804 gap,11 gap,14 gap,27 gap,39 gap,42 gap,49 gap,54 gap,56 gap,62 gap,65 gap,78 gap,84 gap,90 gap,110 gap,114 gap,119 gap,140 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,29 gold,41 gold,48 gold,53 gold,55 gold,61 gold,64 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 intronEst,28 intronEst,38 intronEst,73 intronEst,96 intronEst,101 intronEst,108 intronEst,125 intronEst,137 intronEst,157 intronEst,161 intronEst,164 intronEst,167 intronEst,170 intronEst,179 intronEst,184 intronEst,192 intronEst,207 intronEst,211 intronEst,221 intronEst,233 intronEst,243 intronEst,248 intronEst,258 intronEst,263 intronEst,270 intronEst,281 intronEst,284 intronEst,287 intronEst,292 intronEst,302 intronEst,305 intronEst,311 intronEst,321 intronEst,328 intronEst,337 intronEst,358 intronEst,368 intronEst,400 intronEst,407 intronEst,421 intronEst,430 intronEst,438 intronEst,447 intronEst,456 intronEst,473 intronEst,480 intronEst,489 intronEst,500 intronEst,521 intronEst,544 intronEst,558 intronEst,572 intronEst,583 intronEst,589 intronEst,599 intronEst,603 intronEst,614 intronEst,618 intronEst,625 intronEst,634 intronEst,638 intronEst,648 intronEst,668 intronEst,694 intronEst,700 intronEst,735 intronEst,741 intronEst,773 intronEst,776 intronEst,792 intronEst,801 intronEst,822 intronEst,888 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netFr3,18 netFr3,37 netFr3,59 netFr3,71 netFr3,119 netFr3,132 netFr3,149 netFr3,156 netFr3,203 netFr3,207 netFr3,233 netFr3,243 netFr3,248 netFr3,256 netFr3,264 netFr3,268 netFr3,278 netFr3,296 netFr3,305 netFr3,319 netFr3,334 netFr3,340 netFr3,343 netFr3,358 netFr3,364 netFr3,368 netFr3,388 netFr3,394 netFr3,408 netFr3,426 netFr3,443 netFr3,446 netFr3,451 netFr3,464 netFr3,477 netFr3,479 netFr3,486 netFr3,489 netFr3,496 netFr3,502 netFr3,515 netFr3,526 netFr3,530 netFr3,533 netFr3,541 netFr3,545 netFr3,551 netFr3,562 netFr3,565 netFr3,577 netFr3,585 netFr3,587 netFr3,595 netFr3,601 netFr3,610 netFr3,613 netFr3,644 netFr3,649 netFr3,658 netFr3,662 netFr3,669 netFr3,692 netFr3,700 netFr3,770 netFr3,774 netFr3,782 netFr3,786 netFr3,790 netFr3,798 netFr3,843 netFr3,853 netFr3,872 netFr3,875 netFr3,887 netFr3,911 netFr3,953 netFr3,959 netFr3,977 netFr3,984 netFr3,996 netFr3,1005 netFr3,1026 netFr3,1066 netMm10,18 netMm10,37 netMm10,59 netMm10,71 netMm10,119 netMm10,132 netMm10,149 netMm10,156 netMm10,203 netMm10,207 netMm10,233 netMm10,243 netMm10,248 netMm10,256 netMm10,264 netMm10,268 netMm10,278 netMm10,296 netMm10,305 netMm10,319 netMm10,334 netMm10,340 netMm10,343 netMm10,358 netMm10,364 netMm10,368 netMm10,388 netMm10,394 netMm10,408 netMm10,426 netMm10,443 netMm10,446 netMm10,451 netMm10,464 netMm10,477 netMm10,479 netMm10,486 netMm10,489 netMm10,496 netMm10,502 netMm10,515 netMm10,526 netMm10,530 netMm10,533 netMm10,541 netMm10,545 netMm10,551 netMm10,562 netMm10,565 netMm10,577 netMm10,585 netMm10,587 netMm10,595 netMm10,601 netMm10,610 netMm10,613 netMm10,644 netMm10,649 netMm10,658 netMm10,662 netMm10,669 netMm10,692 netMm10,700 netMm10,770 netMm10,774 netMm10,782 netMm10,786 netMm10,790 netMm10,798 netMm10,843 netMm10,853 netMm10,872 netMm10,875 netMm10,887 netMm10,911 netMm10,953 netMm10,959 netMm10,977 netMm10,984 netMm10,996 netMm10,1005 netMm10,1026 netMm10,1066 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,99 transMapEnsemblV5,120 transMapEnsemblV5,127 transMapEnsemblV5,162 transMapEnsemblV5,179 transMapEnsemblV5,202 transMapEnsemblV5,210 transMapEnsemblV5,253 transMapEnsemblV5,257 transMapEnsemblV5,261 transMapEnsemblV5,273 transMapEnsemblV5,279 transMapEnsemblV5,296 transMapEnsemblV5,304 transMapEnsemblV5,311 transMapEnsemblV5,313 transMapEnsemblV5,324 transMapEnsemblV5,329 transMapEnsemblV5,333 transMapEnsemblV5,342 transMapEnsemblV5,346 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,406 transMapEnsemblV5,416 transMapEnsemblV5,419 transMapEnsemblV5,441 transMapEnsemblV5,450 transMapEnsemblV5,463 transMapEnsemblV5,473 transMapEnsemblV5,485 transMapEnsemblV5,506 transMapEnsemblV5,520 transMapEnsemblV5,531 transMapEnsemblV5,535 transMapEnsemblV5,541 transMapEnsemblV5,580 transMapEnsemblV5,588 transMapEnsemblV5,606 transMapEnsemblV5,622 transMapEnsemblV5,645 transMapEnsemblV5,694 transMapEnsemblV5,706 transMapEnsemblV5,808 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,68 transMapEstV5,89 transMapEstV5,96 transMapEstV5,131 transMapEstV5,148 transMapEstV5,171 transMapEstV5,179 transMapEstV5,222 transMapEstV5,226 transMapEstV5,230 transMapEstV5,242 transMapEstV5,248 transMapEstV5,265 transMapEstV5,273 transMapEstV5,280 transMapEstV5,282 transMapEstV5,293 transMapEstV5,298 transMapEstV5,302 transMapEstV5,311 transMapEstV5,315 transMapEstV5,317 transMapEstV5,348 transMapEstV5,375 transMapEstV5,385 transMapEstV5,388 transMapEstV5,410 transMapEstV5,419 transMapEstV5,432 transMapEstV5,442 transMapEstV5,454 transMapEstV5,475 transMapEstV5,489 transMapEstV5,500 transMapEstV5,504 transMapEstV5,510 transMapEstV5,549 transMapEstV5,557 transMapEstV5,575 transMapEstV5,591 transMapEstV5,614 transMapEstV5,663 transMapEstV5,675 transMapEstV5,777 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,68 transMapRefSeqV5,89 transMapRefSeqV5,96 transMapRefSeqV5,131 transMapRefSeqV5,148 transMapRefSeqV5,171 transMapRefSeqV5,179 transMapRefSeqV5,222 transMapRefSeqV5,226 transMapRefSeqV5,230 transMapRefSeqV5,242 transMapRefSeqV5,248 transMapRefSeqV5,265 transMapRefSeqV5,273 transMapRefSeqV5,280 transMapRefSeqV5,282 transMapRefSeqV5,293 transMapRefSeqV5,298 transMapRefSeqV5,302 transMapRefSeqV5,311 transMapRefSeqV5,315 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,375 transMapRefSeqV5,385 transMapRefSeqV5,388 transMapRefSeqV5,410 transMapRefSeqV5,419 transMapRefSeqV5,432 transMapRefSeqV5,442 transMapRefSeqV5,454 transMapRefSeqV5,475 transMapRefSeqV5,489 transMapRefSeqV5,500 transMapRefSeqV5,504 transMapRefSeqV5,510 transMapRefSeqV5,549 transMapRefSeqV5,557 transMapRefSeqV5,575 transMapRefSeqV5,591 transMapRefSeqV5,614 transMapRefSeqV5,663 transMapRefSeqV5,675 transMapRefSeqV5,777 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,68 transMapRnaV5,89 transMapRnaV5,96 transMapRnaV5,131 transMapRnaV5,148 transMapRnaV5,171 transMapRnaV5,179 transMapRnaV5,222 transMapRnaV5,226 transMapRnaV5,230 transMapRnaV5,242 transMapRnaV5,248 transMapRnaV5,265 transMapRnaV5,273 transMapRnaV5,280 transMapRnaV5,282 transMapRnaV5,293 transMapRnaV5,298 transMapRnaV5,302 transMapRnaV5,311 transMapRnaV5,315 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,375 transMapRnaV5,385 transMapRnaV5,388 transMapRnaV5,410 transMapRnaV5,419 transMapRnaV5,432 transMapRnaV5,442 transMapRnaV5,454 transMapRnaV5,475 transMapRnaV5,489 transMapRnaV5,500 transMapRnaV5,504 transMapRnaV5,510 transMapRnaV5,549 transMapRnaV5,557 transMapRnaV5,575 transMapRnaV5,591 transMapRnaV5,614 transMapRnaV5,663 transMapRnaV5,675 transMapRnaV5,777 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,92 transMapV5,99 transMapV5,104 transMapV5,122 transMapV5,127 transMapV5,133 transMapV5,137 transMapV5,174 transMapV5,195 transMapV5,202 transMapV5,237 transMapV5,254 transMapV5,277 transMapV5,285 transMapV5,328 transMapV5,332 transMapV5,336 transMapV5,348 transMapV5,354 transMapV5,371 transMapV5,379 transMapV5,386 transMapV5,388 transMapV5,399 transMapV5,404 transMapV5,408 transMapV5,417 transMapV5,421 transMapV5,423 transMapV5,454 transMapV5,481 transMapV5,491 transMapV5,494 transMapV5,516 transMapV5,525 transMapV5,538 transMapV5,548 transMapV5,560 transMapV5,581 transMapV5,595 transMapV5,606 transMapV5,610 transMapV5,616 transMapV5,655 transMapV5,663 transMapV5,681 transMapV5,697 transMapV5,720 transMapV5,769 transMapV5,781 transMapV5,883 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainFr3,805 chainMm10,805 chainNetFr3,808 chainNetMm10,808 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netFr3,805 netMm10,805 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainFr3,655 chainFr3,794 chainFr3,879 chainMm10,655 chainMm10,794 chainMm10,879 chainNetFr3,658 chainNetFr3,797 chainNetFr3,882 chainNetMm10,658 chainNetMm10,797 chainNetMm10,882 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netFr3,655 netFr3,794 netFr3,879 netMm10,655 netMm10,794 netMm10,879 transMapV5,130 uniprot,1083 uniprot,1516 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 est,622 intronEst,703 transMapEnsemblV5,453 transMapEstV5,422 transMapRefSeqV5,422 transMapRnaV5,422 transMapV5,528 uniprot,705 uniprot,1092 therefore gold,123 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainFr3,52 chainFr3,102 chainFr3,413 chainFr3,667 chainMm10,52 chainMm10,102 chainMm10,413 chainMm10,667 chainNetFr3,55 chainNetFr3,105 chainNetFr3,416 chainNetFr3,670 chainNetMm10,55 chainNetMm10,105 chainNetMm10,416 chainNetMm10,670 ensGene,10 ensGene,154 ensemblGeneScaffold,56 est,590 intronEst,671 microsat,24 nestedRepeats,262 nestedRepeats,266 netFr3,52 netFr3,102 netFr3,413 netFr3,667 netMm10,52 netMm10,102 netMm10,413 netMm10,667 rmsk,235 simpleRepeat,33 transMapEnsemblV5,460 transMapEnsemblV5,469 transMapEnsemblV5,524 transMapEnsemblV5,585 transMapEstV5,429 transMapEstV5,438 transMapEstV5,493 transMapEstV5,554 transMapRefSeqV5,429 transMapRefSeqV5,438 transMapRefSeqV5,493 transMapRefSeqV5,554 transMapRnaV5,429 transMapRnaV5,438 transMapRnaV5,493 transMapRnaV5,554 transMapV5,12 transMapV5,535 transMapV5,544 transMapV5,599 transMapV5,660 uniprot,99 uniprot,130 uniprot,1160 thesis chainFr3,1025 chainMm10,1025 chainNetFr3,1028 chainNetMm10,1028 netFr3,1025 netMm10,1025 they chainFr3,330 chainMm10,330 chainNetFr3,333 chainNetMm10,333 netFr3,330 netMm10,330 uniprot,179 thibaud-nissen xenoRefGene,326 thick chainFr3,43 chainMm10,43 chainNetFr3,46 chainNetMm10,46 netFr3,43 netMm10,43 this augustusGene,13 augustusGene,106 augustusGene,224 chainFr3,13 chainFr3,173 chainFr3,301 chainFr3,400 chainFr3,698 chainFr3,820 chainMm10,13 chainMm10,173 chainMm10,301 chainMm10,400 chainMm10,698 chainMm10,820 chainNetFr3,16 chainNetFr3,176 chainNetFr3,304 chainNetFr3,403 chainNetFr3,701 chainNetFr3,823 chainNetMm10,16 chainNetMm10,176 chainNetMm10,304 chainNetMm10,403 chainNetMm10,701 chainNetMm10,823 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 ensemblGeneScaffold,11 ensemblGeneScaffold,64 ensemblGeneScaffold,104 est,13 est,50 est,115 est,142 est,378 est,415 est,595 est,631 est,644 est,726 gap,8 gap,37 gap,45 gap,75 gap,116 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,39 gold,44 gold,70 gold,140 intronEst,14 intronEst,134 intronEst,196 intronEst,223 intronEst,459 intronEst,496 intronEst,676 intronEst,712 intronEst,725 intronEst,807 intronEst,810 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netFr3,13 netFr3,173 netFr3,301 netFr3,400 netFr3,698 netFr3,820 netMm10,13 netMm10,173 netMm10,301 netMm10,400 netMm10,698 netMm10,820 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,134 transMapEnsemblV5,288 transMapEnsemblV5,677 transMapEstV5,13 transMapEstV5,65 transMapEstV5,75 transMapEstV5,103 transMapEstV5,257 transMapEstV5,646 transMapRefSeqV5,14 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,103 transMapRefSeqV5,257 transMapRefSeqV5,646 transMapRnaV5,14 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,103 transMapRnaV5,257 transMapRnaV5,646 transMapV5,171 transMapV5,181 transMapV5,209 transMapV5,363 transMapV5,752 ucscToINSDC,14 ucscToINSDC,46 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,371 est,404 intronEst,452 intronEst,485 microsat,62 mrna,317 nestedRepeats,272 uniprot,729 xenoRefGene,229 thousands chainFr3,254 chainMm10,254 chainNetFr3,257 chainNetMm10,257 netFr3,254 netMm10,254 three uniprot,1227 three-step uniprot,989 through gap,109 nestedRepeats,97 rmsk,309 transMapEnsemblV5,530 transMapEstV5,499 transMapRefSeqV5,499 transMapRnaV5,499 transMapV5,605 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time chainFr3,803 chainMm10,803 chainNetFr3,806 chainNetMm10,806 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netFr3,803 netMm10,803 tissue est,207 est,242 est,257 intronEst,288 intronEst,323 intronEst,338 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,331 mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainFr3,23 chainFr3,70 chainFr3,145 chainFr3,215 chainFr3,227 chainFr3,321 chainFr3,332 chainFr3,337 chainFr3,349 chainFr3,355 chainFr3,378 chainFr3,459 chainFr3,473 chainFr3,557 chainFr3,660 chainFr3,796 chainFr3,808 chainFr3,848 chainFr3,871 chainFr3,881 chainMm10,23 chainMm10,70 chainMm10,145 chainMm10,215 chainMm10,227 chainMm10,321 chainMm10,332 chainMm10,337 chainMm10,349 chainMm10,355 chainMm10,378 chainMm10,459 chainMm10,473 chainMm10,557 chainMm10,660 chainMm10,796 chainMm10,808 chainMm10,848 chainMm10,871 chainMm10,881 chainNetFr3,26 chainNetFr3,73 chainNetFr3,148 chainNetFr3,218 chainNetFr3,230 chainNetFr3,324 chainNetFr3,335 chainNetFr3,340 chainNetFr3,352 chainNetFr3,358 chainNetFr3,381 chainNetFr3,462 chainNetFr3,476 chainNetFr3,560 chainNetFr3,663 chainNetFr3,799 chainNetFr3,811 chainNetFr3,851 chainNetFr3,874 chainNetFr3,884 chainNetMm10,26 chainNetMm10,73 chainNetMm10,148 chainNetMm10,218 chainNetMm10,230 chainNetMm10,324 chainNetMm10,335 chainNetMm10,340 chainNetMm10,352 chainNetMm10,358 chainNetMm10,381 chainNetMm10,462 chainNetMm10,476 chainNetMm10,560 chainNetMm10,663 chainNetMm10,799 chainNetMm10,811 chainNetMm10,851 chainNetMm10,874 chainNetMm10,884 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 ensemblGeneScaffold,50 ensemblGeneScaffold,88 ensemblGeneScaffold,100 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,335 est,384 est,394 est,418 est,439 est,448 est,517 est,582 est,642 est,737 gap,130 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 intronEst,57 intronEst,178 intronEst,205 intronEst,242 intronEst,246 intronEst,261 intronEst,268 intronEst,272 intronEst,290 intronEst,310 intronEst,317 intronEst,416 intronEst,465 intronEst,475 intronEst,499 intronEst,520 intronEst,529 intronEst,598 intronEst,663 intronEst,723 intronEst,821 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netFr3,23 netFr3,70 netFr3,145 netFr3,215 netFr3,227 netFr3,321 netFr3,332 netFr3,337 netFr3,349 netFr3,355 netFr3,378 netFr3,459 netFr3,473 netFr3,557 netFr3,660 netFr3,796 netFr3,808 netFr3,848 netFr3,871 netFr3,881 netMm10,23 netMm10,70 netMm10,145 netMm10,215 netMm10,227 netMm10,321 netMm10,332 netMm10,337 netMm10,349 netMm10,355 netMm10,378 netMm10,459 netMm10,473 netMm10,557 netMm10,660 netMm10,796 netMm10,808 netMm10,848 netMm10,871 netMm10,881 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,112 transMapEnsemblV5,122 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,260 transMapEnsemblV5,293 transMapEnsemblV5,301 transMapEnsemblV5,318 transMapEnsemblV5,332 transMapEnsemblV5,345 transMapEnsemblV5,384 transMapEnsemblV5,429 transMapEnsemblV5,439 transMapEnsemblV5,472 transMapEnsemblV5,478 transMapEnsemblV5,491 transMapEnsemblV5,651 transMapEnsemblV5,693 transMapEnsemblV5,772 transMapEstV5,81 transMapEstV5,91 transMapEstV5,147 transMapEstV5,170 transMapEstV5,229 transMapEstV5,262 transMapEstV5,270 transMapEstV5,287 transMapEstV5,301 transMapEstV5,314 transMapEstV5,353 transMapEstV5,398 transMapEstV5,408 transMapEstV5,441 transMapEstV5,447 transMapEstV5,460 transMapEstV5,620 transMapEstV5,662 transMapEstV5,741 transMapRefSeqV5,81 transMapRefSeqV5,91 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,229 transMapRefSeqV5,262 transMapRefSeqV5,270 transMapRefSeqV5,287 transMapRefSeqV5,301 transMapRefSeqV5,314 transMapRefSeqV5,353 transMapRefSeqV5,398 transMapRefSeqV5,408 transMapRefSeqV5,441 transMapRefSeqV5,447 transMapRefSeqV5,460 transMapRefSeqV5,620 transMapRefSeqV5,662 transMapRefSeqV5,741 transMapRnaV5,81 transMapRnaV5,91 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,229 transMapRnaV5,262 transMapRnaV5,270 transMapRnaV5,287 transMapRnaV5,301 transMapRnaV5,314 transMapRnaV5,353 transMapRnaV5,398 transMapRnaV5,408 transMapRnaV5,441 transMapRnaV5,447 transMapRnaV5,460 transMapRnaV5,620 transMapRnaV5,662 transMapRnaV5,741 transMapV5,80 transMapV5,90 transMapV5,121 transMapV5,132 transMapV5,155 transMapV5,187 transMapV5,197 transMapV5,253 transMapV5,276 transMapV5,335 transMapV5,368 transMapV5,376 transMapV5,393 transMapV5,407 transMapV5,420 transMapV5,459 transMapV5,504 transMapV5,514 transMapV5,547 transMapV5,553 transMapV5,566 transMapV5,726 transMapV5,768 transMapV5,847 ucscToINSDC,22 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together chainFr3,125 chainMm10,125 chainNetFr3,128 chainNetMm10,128 netFr3,125 netMm10,125 tolerate chainFr3,93 chainMm10,93 chainNetFr3,96 chainNetMm10,96 netFr3,93 netMm10,93 tolerated uniprot,1257 tool est,807 intronEst,891 mrna,524 transMapEnsemblV5,615 transMapEnsemblV5,646 transMapEstV5,584 transMapEstV5,615 transMapRefSeqV5,584 transMapRefSeqV5,615 transMapRnaV5,584 transMapRnaV5,615 transMapV5,690 transMapV5,721 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainFr3,514 chainMm10,514 chainNetFr3,517 chainNetMm10,517 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netFr3,514 netMm10,514 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainFr3,389 chainFr3,409 chainMm10,389 chainMm10,409 chainNetFr3,392 chainNetFr3,412 chainNetMm10,392 chainNetMm10,412 netFr3,389 netFr3,409 netMm10,389 netMm10,409 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainFr3,14 chainFr3,58 chainFr3,61 chainFr3,121 chainFr3,263 chainFr3,266 chainFr3,316 chainFr3,351 chainFr3,383 chainFr3,570 chainFr3,699 chainFr3,762 chainMm10,14 chainMm10,58 chainMm10,61 chainMm10,121 chainMm10,263 chainMm10,266 chainMm10,316 chainMm10,351 chainMm10,383 chainMm10,570 chainMm10,699 chainMm10,762 chainNetFr3,17 chainNetFr3,61 chainNetFr3,64 chainNetFr3,124 chainNetFr3,266 chainNetFr3,269 chainNetFr3,319 chainNetFr3,354 chainNetFr3,386 chainNetFr3,573 chainNetFr3,702 chainNetFr3,765 chainNetMm10,17 chainNetMm10,61 chainNetMm10,64 chainNetMm10,124 chainNetMm10,266 chainNetMm10,269 chainNetMm10,319 chainNetMm10,354 chainNetMm10,386 chainNetMm10,573 chainNetMm10,702 chainNetMm10,765 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 ensemblGeneScaffold,12 ensemblGeneScaffold,65 est,14 est,51 est,116 est,141 est,153 est,379 est,645 est,727 gap,9 gap,76 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,141 intronEst,15 intronEst,129 intronEst,135 intronEst,197 intronEst,222 intronEst,234 intronEst,460 intronEst,726 intronEst,808 intronEst,811 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netFr3,14 netFr3,58 netFr3,61 netFr3,121 netFr3,263 netFr3,266 netFr3,316 netFr3,351 netFr3,383 netFr3,570 netFr3,699 netFr3,762 netMm10,14 netMm10,58 netMm10,61 netMm10,121 netMm10,263 netMm10,266 netMm10,316 netMm10,351 netMm10,383 netMm10,570 netMm10,699 netMm10,762 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,97 transMapEnsemblV5,107 transMapEnsemblV5,233 transMapEnsemblV5,572 transMapEnsemblV5,576 transMapEnsemblV5,678 transMapEstV5,14 transMapEstV5,66 transMapEstV5,76 transMapEstV5,202 transMapEstV5,541 transMapEstV5,545 transMapEstV5,647 transMapRefSeqV5,15 transMapRefSeqV5,66 transMapRefSeqV5,76 transMapRefSeqV5,202 transMapRefSeqV5,541 transMapRefSeqV5,545 transMapRefSeqV5,647 transMapRnaV5,15 transMapRnaV5,66 transMapRnaV5,76 transMapRnaV5,202 transMapRnaV5,541 transMapRnaV5,545 transMapRnaV5,647 transMapV5,102 transMapV5,172 transMapV5,182 transMapV5,308 transMapV5,647 transMapV5,651 transMapV5,753 ucscToINSDC,15 ucscToINSDC,47 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 chainFr3,776 chainMm10,776 chainNetFr3,779 chainNetMm10,779 ensGene,24 est,59 est,424 genscan,56 genscan,74 intronEst,143 intronEst,505 mrna,40 mrna,363 netFr3,776 netMm10,776 transMapEnsemblV5,105 transMapEnsemblV5,525 transMapEnsemblV5,586 transMapEstV5,74 transMapEstV5,494 transMapEstV5,555 transMapRefSeqV5,74 transMapRefSeqV5,494 transMapRefSeqV5,555 transMapRnaV5,74 transMapRnaV5,494 transMapRnaV5,555 transMapV5,13 transMapV5,180 transMapV5,600 transMapV5,661 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 traditional chainFr3,85 chainMm10,85 chainNetFr3,88 chainNetMm10,88 netFr3,85 netMm10,85 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,459 intronEst,55 intronEst,540 transcript est,554 intronEst,635 transMapEnsemblV5,154 transMapEnsemblV5,326 transMapEnsemblV5,380 transMapEstV5,123 transMapEstV5,295 transMapEstV5,349 transMapRefSeqV5,123 transMapRefSeqV5,295 transMapRefSeqV5,349 transMapRnaV5,123 transMapRnaV5,295 transMapRnaV5,349 transMapV5,229 transMapV5,401 transMapV5,455 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,510 intronEst,591 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 est,101 est,493 est,540 est,562 intronEst,182 intronEst,574 intronEst,621 intronEst,643 transcriptional genscan,28 transcripts augustusGene,124 transMapEnsemblV5,344 transMapEstV5,313 transMapRefSeqV5,313 transMapRnaV5,313 transMapV5,419 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated transMapV5,156 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,443 transMapEnsemblV5,502 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,600 transMapEnsemblV5,666 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,412 transMapEstV5,471 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,569 transMapEstV5,635 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,412 transMapRefSeqV5,471 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,569 transMapRefSeqV5,635 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,412 transMapRnaV5,471 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,569 transMapRnaV5,635 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,71 transMapV5,101 transMapV5,158 transMapV5,518 transMapV5,577 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,675 transMapV5,741 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainFr3,571 chainFr3,596 chainFr3,906 chainMm10,571 chainMm10,596 chainMm10,906 chainNetFr3,574 chainNetFr3,599 chainNetFr3,909 chainNetMm10,574 chainNetMm10,599 chainNetMm10,909 netFr3,571 netFr3,596 netFr3,906 netMm10,571 netMm10,596 netMm10,906 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainFr3,804 chainMm10,804 chainNetFr3,807 chainNetMm10,807 netFr3,804 netMm10,804 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainFr3,338 chainMm10,338 chainNetFr3,341 chainNetMm10,341 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netFr3,338 netMm10,338 xenoRefGene,133 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainFr3,912 chainMm10,912 chainNetFr3,915 chainNetMm10,915 netFr3,912 netMm10,912 transMapEnsemblV5,455 transMapEnsemblV5,492 transMapEstV5,424 transMapEstV5,461 transMapRefSeqV5,424 transMapRefSeqV5,461 transMapRnaV5,424 transMapRnaV5,461 transMapV5,530 transMapV5,567 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type est,169 est,199 gold,146 intronEst,250 intronEst,280 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainFr3,510 chainMm10,510 chainNetFr3,513 chainNetMm10,513 est,248 est,427 gap,122 gold,137 intronEst,329 intronEst,508 mrna,194 mrna,366 netFr3,510 netMm10,510 transMapEnsemblV5,139 transMapEstV5,108 transMapRefSeqV5,108 transMapRnaV5,108 transMapV5,214 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 est,33 est,462 gc5BaseBw,33 intronEst,44 intronEst,543 u chainFr3,1075 chainMm10,1075 chainNetFr3,1078 chainNetMm10,1078 netFr3,1075 netMm10,1075 ucsc est,731 gap,129 intronEst,815 mrna,448 nestedRepeats,245 transMapEnsemblV5,35 transMapEnsemblV5,163 transMapEnsemblV5,184 transMapEnsemblV5,685 transMapEstV5,33 transMapEstV5,132 transMapEstV5,153 transMapEstV5,654 transMapRefSeqV5,33 transMapRefSeqV5,132 transMapRefSeqV5,153 transMapRefSeqV5,654 transMapRnaV5,33 transMapRnaV5,132 transMapRnaV5,153 transMapRnaV5,654 transMapV5,32 transMapV5,238 transMapV5,259 transMapV5,760 ucscToINSDC,17 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,286 undergone xenoRefGene,69 underlies genscan,142 underlying ensemblGeneScaffold,23 ensemblGeneScaffold,52 uniprot,1682 xenoRefGene,37 underneath chainFr3,840 chainMm10,840 chainNetFr3,843 chainNetMm10,843 netFr3,840 netMm10,840 unexpected uniprot,766 ungapped chainFr3,449 chainMm10,449 chainNetFr3,452 chainNetMm10,452 netFr3,449 netMm10,449 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,386 transMapEnsemblV5,397 transMapEnsemblV5,434 transMapEnsemblV5,445 transMapEstV5,355 transMapEstV5,366 transMapEstV5,403 transMapEstV5,414 transMapRefSeqV5,355 transMapRefSeqV5,366 transMapRefSeqV5,403 transMapRefSeqV5,414 transMapRnaV5,355 transMapRnaV5,366 transMapRnaV5,403 transMapRnaV5,414 transMapV5,461 transMapV5,472 transMapV5,509 transMapV5,520 uniprot,1600 universal uniprot,1993 university chainFr3,926 chainFr3,960 chainFr3,1006 chainFr3,1029 chainMm10,926 chainMm10,960 chainMm10,1006 chainMm10,1029 chainNetFr3,929 chainNetFr3,963 chainNetFr3,1009 chainNetFr3,1032 chainNetMm10,929 chainNetMm10,963 chainNetMm10,1009 chainNetMm10,1032 netFr3,926 netFr3,960 netFr3,1006 netFr3,1029 netMm10,926 netMm10,960 netMm10,1006 netMm10,1029 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainFr3,230 chainMm10,230 chainNetFr3,233 chainNetMm10,233 est,605 intronEst,686 netFr3,230 netMm10,230 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainFr3,187 chainMm10,187 chainNetFr3,190 chainNetMm10,190 netFr3,187 netMm10,187 unspliced est,8 est,634 intronEst,123 intronEst,715 unsure rmsk,263 up gold,77 rmsk,146 update est,786 intronEst,870 mrna,503 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use est,166 gold,88 intronEst,247 mrna,112 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainFr3,299 chainFr3,673 chainFr3,704 chainFr3,795 chainFr3,847 chainFr3,880 chainMm10,299 chainMm10,673 chainMm10,704 chainMm10,795 chainMm10,847 chainMm10,880 chainNetFr3,302 chainNetFr3,676 chainNetFr3,707 chainNetFr3,798 chainNetFr3,850 chainNetFr3,883 chainNetMm10,302 chainNetMm10,676 chainNetMm10,707 chainNetMm10,798 chainNetMm10,850 chainNetMm10,883 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 ensemblGeneScaffold,82 est,123 est,275 est,334 est,573 genscan,159 gold,14 intronEst,204 intronEst,356 intronEst,415 intronEst,654 mrna,69 mrna,221 mrna,280 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netFr3,299 netFr3,673 netFr3,704 netFr3,795 netFr3,847 netFr3,880 netMm10,299 netMm10,673 netMm10,704 netMm10,795 netMm10,847 netMm10,880 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,187 transMapEnsemblV5,240 transMapEnsemblV5,245 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,317 transMapEnsemblV5,650 transMapEstV5,156 transMapEstV5,209 transMapEstV5,214 transMapEstV5,234 transMapEstV5,254 transMapEstV5,286 transMapEstV5,619 transMapRefSeqV5,156 transMapRefSeqV5,209 transMapRefSeqV5,214 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,286 transMapRefSeqV5,619 transMapRnaV5,156 transMapRnaV5,209 transMapRnaV5,214 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,286 transMapRnaV5,619 transMapV5,70 transMapV5,262 transMapV5,315 transMapV5,320 transMapV5,340 transMapV5,360 transMapV5,392 transMapV5,725 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainFr3,284 chainFr3,483 chainMm10,284 chainMm10,483 chainNetFr3,287 chainNetFr3,486 chainNetMm10,287 chainNetMm10,486 microsat,20 netFr3,284 netFr3,483 netMm10,284 netMm10,483 user est,393 intronEst,474 mrna,339 transMapEnsemblV5,121 transMapEstV5,90 transMapRefSeqV5,90 transMapRnaV5,90 transMapV5,196 users uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 chainFr3,75 chainFr3,609 chainFr3,769 chainMm10,75 chainMm10,609 chainMm10,769 chainNetFr3,78 chainNetFr3,612 chainNetFr3,772 chainNetMm10,78 chainNetMm10,612 chainNetMm10,772 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 est,656 intronEst,737 microsat,90 mrna,396 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netFr3,75 netFr3,609 netFr3,769 netMm10,75 netMm10,609 netMm10,769 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,564 transMapEnsemblV5,613 transMapEnsemblV5,765 transMapEstV5,44 transMapEstV5,533 transMapEstV5,582 transMapEstV5,734 transMapRefSeqV5,44 transMapRefSeqV5,533 transMapRefSeqV5,582 transMapRefSeqV5,734 transMapRnaV5,44 transMapRnaV5,533 transMapRnaV5,582 transMapRnaV5,734 transMapV5,43 transMapV5,82 transMapV5,125 transMapV5,136 transMapV5,143 transMapV5,639 transMapV5,688 transMapV5,840 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,227 ustat windowmaskerSdust,66 usually est,40 intronEst,51 nestedRepeats,192 transMapEnsemblV5,505 transMapEstV5,474 transMapRefSeqV5,474 transMapRnaV5,474 transMapV5,580 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,165 v ensGene,185 ensemblGeneScaffold,124 v3.1 augustusGene,7 v4 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 v5 transMapV5,2 transMapV5,742 valid est,214 intronEst,295 mrna,160 validate xenoRefGene,153 validation genscan,107 value est,285 intronEst,366 mrna,231 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainFr3,1033 chainMm10,1033 chainNetFr3,1036 chainNetMm10,1036 netFr3,1033 netMm10,1033 vector est,470 intronEst,551 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,159 transMapEnsemblV5,192 transMapEstV5,29 transMapEstV5,128 transMapEstV5,161 transMapRefSeqV5,29 transMapRefSeqV5,128 transMapRefSeqV5,161 transMapRnaV5,29 transMapRnaV5,128 transMapRnaV5,161 transMapV5,28 transMapV5,114 transMapV5,234 transMapV5,267 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very est,677 intronEst,758 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,328 transMapEstV5,297 transMapRefSeqV5,297 transMapRnaV5,297 transMapV5,403 uniprot,1293 view chainFr3,460 chainMm10,460 chainNetFr3,463 chainNetMm10,463 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 est,210 intronEst,291 mrna,156 netFr3,460 netMm10,460 viewed est,638 gold,80 intronEst,719 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 w chainFr3,1035 chainFr3,1055 chainFr3,1103 chainMm10,1035 chainMm10,1055 chainMm10,1103 chainNetFr3,1038 chainNetFr3,1058 chainNetFr3,1106 chainNetMm10,1038 chainNetMm10,1058 chainNetMm10,1106 gold,149 netFr3,1035 netFr3,1055 netFr3,1103 netMm10,1035 netMm10,1055 netMm10,1103 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainFr3,654 chainFr3,672 chainFr3,793 chainFr3,838 chainFr3,846 chainFr3,866 chainFr3,878 chainFr3,903 chainFr3,921 chainFr3,956 chainMm10,654 chainMm10,672 chainMm10,793 chainMm10,838 chainMm10,846 chainMm10,866 chainMm10,878 chainMm10,903 chainMm10,921 chainMm10,956 chainNetFr3,657 chainNetFr3,675 chainNetFr3,796 chainNetFr3,841 chainNetFr3,849 chainNetFr3,869 chainNetFr3,881 chainNetFr3,906 chainNetFr3,924 chainNetFr3,959 chainNetMm10,657 chainNetMm10,675 chainNetMm10,796 chainNetMm10,841 chainNetMm10,849 chainNetMm10,869 chainNetMm10,881 chainNetMm10,906 chainNetMm10,924 chainNetMm10,959 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 est,699 est,728 intronEst,780 intronEst,812 microsat,108 mrna,415 mrna,445 netFr3,654 netFr3,672 netFr3,793 netFr3,838 netFr3,846 netFr3,866 netFr3,878 netFr3,903 netFr3,921 netFr3,956 netMm10,654 netMm10,672 netMm10,793 netMm10,838 netMm10,846 netMm10,866 netMm10,878 netMm10,903 netMm10,921 netMm10,956 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,222 transMapEnsemblV5,239 transMapEnsemblV5,284 transMapEnsemblV5,316 transMapEnsemblV5,679 transMapEstV5,191 transMapEstV5,208 transMapEstV5,253 transMapEstV5,285 transMapEstV5,648 transMapRefSeqV5,191 transMapRefSeqV5,208 transMapRefSeqV5,253 transMapRefSeqV5,285 transMapRefSeqV5,648 transMapRnaV5,191 transMapRnaV5,208 transMapRnaV5,253 transMapRnaV5,285 transMapRnaV5,648 transMapV5,297 transMapV5,314 transMapV5,359 transMapV5,391 transMapV5,754 ucscToINSDC,48 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,254 xenoRefGene,283 way transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 transMapV5,665 uniprot,1459 ways gc5BaseBw,47 we ensGene,146 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 webb chainFr3,935 chainFr3,972 chainMm10,935 chainMm10,972 chainNetFr3,938 chainNetFr3,975 chainNetMm10,938 chainNetMm10,975 netFr3,935 netFr3,972 netMm10,935 netMm10,972 weekly xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 est,542 est,565 genscan,36 intronEst,623 intronEst,646 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainFr3,582 chainFr3,590 chainFr3,597 chainFr3,604 chainFr3,616 chainFr3,690 chainFr3,764 chainFr3,944 chainFr3,988 chainFr3,1002 chainMm10,582 chainMm10,590 chainMm10,597 chainMm10,604 chainMm10,616 chainMm10,690 chainMm10,764 chainMm10,944 chainMm10,988 chainMm10,1002 chainNetFr3,585 chainNetFr3,593 chainNetFr3,600 chainNetFr3,607 chainNetFr3,619 chainNetFr3,693 chainNetFr3,767 chainNetFr3,947 chainNetFr3,991 chainNetFr3,1005 chainNetMm10,585 chainNetMm10,593 chainNetMm10,600 chainNetMm10,607 chainNetMm10,619 chainNetMm10,693 chainNetMm10,767 chainNetMm10,947 chainNetMm10,991 chainNetMm10,1005 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 ensemblGeneScaffold,59 est,592 est,651 est,723 gap,136 gc5BaseBw,79 intronEst,673 intronEst,732 mrna,391 mrna,439 netFr3,582 netFr3,590 netFr3,597 netFr3,604 netFr3,616 netFr3,690 netFr3,764 netFr3,944 netFr3,988 netFr3,1002 netMm10,582 netMm10,590 netMm10,597 netMm10,604 netMm10,616 netMm10,690 netMm10,764 netMm10,944 netMm10,988 netMm10,1002 transMapEnsemblV5,156 transMapEnsemblV5,186 transMapEnsemblV5,213 transMapEnsemblV5,244 transMapEnsemblV5,250 transMapEnsemblV5,264 transMapEnsemblV5,351 transMapEnsemblV5,382 transMapEnsemblV5,395 transMapEstV5,125 transMapEstV5,155 transMapEstV5,182 transMapEstV5,213 transMapEstV5,219 transMapEstV5,233 transMapEstV5,320 transMapEstV5,351 transMapEstV5,364 transMapRefSeqV5,125 transMapRefSeqV5,155 transMapRefSeqV5,182 transMapRefSeqV5,213 transMapRefSeqV5,219 transMapRefSeqV5,233 transMapRefSeqV5,320 transMapRefSeqV5,351 transMapRefSeqV5,364 transMapRnaV5,125 transMapRnaV5,155 transMapRnaV5,182 transMapRnaV5,213 transMapRnaV5,219 transMapRnaV5,233 transMapRnaV5,320 transMapRnaV5,351 transMapRnaV5,364 transMapV5,116 transMapV5,129 transMapV5,231 transMapV5,261 transMapV5,288 transMapV5,319 transMapV5,325 transMapV5,339 transMapV5,426 transMapV5,457 transMapV5,470 ucscToINSDC,35 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler est,783 intronEst,867 mrna,500 when augustusGene,188 augustusGene,238 chainFr3,411 chainMm10,411 chainNetFr3,414 chainNetMm10,414 est,146 est,156 est,684 intronEst,35 intronEst,227 intronEst,237 intronEst,765 mrna,92 mrna,102 mrna,400 netFr3,411 netMm10,411 transMapEnsemblV5,468 transMapEstV5,437 transMapRefSeqV5,437 transMapRnaV5,437 transMapV5,543 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,239 where chainFr3,194 chainMm10,194 chainNetFr3,197 chainNetMm10,197 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 netFr3,194 netMm10,194 transMapEnsemblV5,272 transMapEnsemblV5,374 transMapEnsemblV5,423 transMapEnsemblV5,511 transMapEstV5,241 transMapEstV5,343 transMapEstV5,392 transMapEstV5,480 transMapRefSeqV5,241 transMapRefSeqV5,343 transMapRefSeqV5,392 transMapRefSeqV5,480 transMapRnaV5,241 transMapRnaV5,343 transMapRnaV5,392 transMapRnaV5,480 transMapV5,347 transMapV5,449 transMapV5,498 transMapV5,586 uniprot,1192 whether chainFr3,862 chainMm10,862 chainNetFr3,865 chainNetMm10,865 netFr3,862 netMm10,862 which augustusGene,159 augustusGene,227 chainFr3,328 chainFr3,620 chainFr3,827 chainMm10,328 chainMm10,620 chainMm10,827 chainNetFr3,331 chainNetFr3,623 chainNetFr3,830 chainNetMm10,331 chainNetMm10,623 chainNetMm10,830 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 est,106 est,233 est,499 est,524 est,671 intronEst,187 intronEst,314 intronEst,580 intronEst,605 intronEst,752 mrna,179 nestedRepeats,31 nestedRepeats,87 netFr3,328 netFr3,620 netFr3,827 netMm10,328 netMm10,620 netMm10,827 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,145 transMapV5,692 uniprot,158 uniprot,1380 uniprot,1768 while chainFr3,218 chainMm10,218 chainNetFr3,221 chainNetMm10,221 netFr3,218 netMm10,218 white gap,105 whole chainFr3,468 chainMm10,468 chainNetFr3,471 chainNetMm10,471 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gap,154 gold,150 netFr3,468 netMm10,468 transMapEnsemblV5,607 transMapEstV5,576 transMapRefSeqV5,576 transMapRnaV5,576 transMapV5,682 whose transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards est,271 intronEst,352 mrna,217 will est,304 est,322 est,351 est,368 intronEst,385 intronEst,403 intronEst,432 intronEst,449 mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish est,235 intronEst,316 mrna,181 xenoRefGene,207 with augustusGene,127 augustusGene,322 chainFr3,42 chainFr3,209 chainFr3,220 chainFr3,592 chainFr3,705 chainFr3,781 chainFr3,905 chainFr3,937 chainFr3,969 chainFr3,1106 chainMm10,42 chainMm10,209 chainMm10,220 chainMm10,592 chainMm10,705 chainMm10,781 chainMm10,905 chainMm10,937 chainMm10,969 chainMm10,1106 chainNetFr3,45 chainNetFr3,212 chainNetFr3,223 chainNetFr3,595 chainNetFr3,708 chainNetFr3,784 chainNetFr3,908 chainNetFr3,940 chainNetFr3,972 chainNetFr3,1109 chainNetMm10,45 chainNetMm10,212 chainNetMm10,223 chainNetMm10,595 chainNetMm10,708 chainNetMm10,784 chainNetMm10,908 chainNetMm10,940 chainNetMm10,972 chainNetMm10,1109 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 est,105 est,501 est,639 est,676 est,719 gap,53 gc5BaseBw,35 gold,52 gold,142 intronEst,186 intronEst,582 intronEst,720 intronEst,757 intronEst,800 microsat,69 microsat,76 mrna,435 nestedRepeats,133 netFr3,42 netFr3,209 netFr3,220 netFr3,592 netFr3,705 netFr3,781 netFr3,905 netFr3,937 netFr3,969 netFr3,1106 netMm10,42 netMm10,209 netMm10,220 netMm10,592 netMm10,705 netMm10,781 netMm10,905 netMm10,937 netMm10,969 netMm10,1106 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,183 transMapEnsemblV5,252 transMapEnsemblV5,353 transMapEnsemblV5,355 transMapEnsemblV5,584 transMapEstV5,152 transMapEstV5,221 transMapEstV5,322 transMapEstV5,324 transMapEstV5,553 transMapRefSeqV5,152 transMapRefSeqV5,221 transMapRefSeqV5,322 transMapRefSeqV5,324 transMapRefSeqV5,553 transMapRnaV5,152 transMapRnaV5,221 transMapRnaV5,322 transMapRnaV5,324 transMapRnaV5,553 transMapV5,258 transMapV5,327 transMapV5,428 transMapV5,430 transMapV5,659 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,230 xenoRefGene,274 within est,139 est,552 est,708 gold,117 intronEst,220 intronEst,633 intronEst,789 mrna,85 mrna,424 simpleRepeat,37 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainFr3,1049 chainFr3,1091 chainMm10,1049 chainMm10,1091 chainNetFr3,1052 chainNetFr3,1094 chainNetMm10,1052 chainNetMm10,1094 est,802 intronEst,886 mrna,519 netFr3,1049 netFr3,1091 netMm10,1049 netMm10,1091 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide est,745 intronEst,829 mrna,462 transMapEnsemblV5,701 transMapEstV5,670 transMapRefSeqV5,670 transMapRnaV5,670 transMapV5,776 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xml uniprot,1510 y ensGene,177 ensemblGeneScaffold,116 yap chainFr3,1032 chainMm10,1032 chainNetFr3,1035 chainNetMm10,1035 netFr3,1032 netMm10,1032 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you est,234 intronEst,315 mrna,180 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,206 younger nestedRepeats,94 your transMapEnsemblV5,632 transMapEstV5,601 transMapRefSeqV5,601 transMapRnaV5,601 transMapV5,707 uniprot,1783 z chainFr3,1095 chainMm10,1095 chainNetFr3,1098 chainNetMm10,1098 netFr3,1095 netMm10,1095 zebrafish augustusGene,202 augustusGene,278 zhang chainFr3,933 chainFr3,1094 chainMm10,933 chainMm10,1094 chainNetFr3,936 chainNetFr3,1097 chainNetMm10,936 chainNetMm10,1097 netFr3,933 netFr3,1094 netMm10,933 netMm10,1094 zheng chainFr3,932 chainMm10,932 chainNetFr3,935 chainNetMm10,935 netFr3,932 netMm10,932 zhu transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 zinc uniprot,326 zoomed-in genscan,103