0 miRNA,102 0.1 refGene,303 0.2 augustusGene,136 0.5 augustusGene,138 est,670 intronEst,745 mrna,384 xenoRefGene,255 000 est,630 gcPercent,30 intronEst,705 mzDy1Dp2Ag1_phast,245 000-base gcPercent,7 1 augustusGene,310 chainAnoGam1,559 chainDp2,539 chainDroYak1,539 est,728 flyreg,36 genomicSuperDups,89 genomicSuperDups,152 genscan,227 intronEst,803 miRNA,261 miRNA,280 miRNA,306 mrna,440 mzDy1Dp2Ag1_phast,626 mzDy1Dp2Ag1_phast,847 netAnoGam1,75 netAnoGam1,206 netAnoGam1,540 netDp2,75 netDp2,206 netDp2,416 netDp2,564 netDroYak1,75 netDroYak1,206 netDroYak1,540 refGene,384 twinscan,176 1.0 chainDroYak1,9 chainDroYak1,27 flyreg,22 netDroYak1,9 netDroYak1,60 100 augustusGene,134 chainAnoGam1,527 chainDp2,507 chainDroYak1,507 microsat,70 mzDy1Dp2Ag1_phast,753 netAnoGam1,508 netDp2,532 netDroYak1,508 1000 genomicSuperDups,5 miRNA,104 1000-2000 augustusGene,161 1003-7 genomicSuperDups,288 1005-17 genomicSuperDups,319 103-7 chainAnoGam1,560 chainDp2,540 chainDroYak1,540 mzDy1Dp2Ag1_phast,848 netAnoGam1,541 netDp2,565 netDroYak1,541 1034-50 mzDy1Dp2Ag1_phast,668 10835645 anophelesEcores,231 10973072 rmsk,325 11 genomicSuperDups,317 11381028 genomicSuperDups,321 11473003 twinscan,179 11484-9 chainAnoGam1,529 chainDp2,509 chainDroYak1,509 mzDy1Dp2Ag1_phast,755 netAnoGam1,510 netDp2,534 netDroYak1,510 115-26 chainAnoGam1,491 chainDp2,471 chainDroYak1,471 mzDy1Dp2Ag1_phast,819 11928468 chainAnoGam1,493 chainDp2,473 chainDroYak1,473 mzDy1Dp2Ag1_phast,821 11932250 blatFugu,249 est,752 intronEst,827 miRNA,377 mrna,464 refGene,356 xenoRefGene,309 12 blatFugu,245 est,748 intronEst,823 miRNA,373 mrna,460 refGene,352 xenoRefGene,305 12169732 genomicSuperDups,290 12529312 chainAnoGam1,562 chainDp2,542 chainDroYak1,542 mzDy1Dp2Ag1_phast,850 netAnoGam1,543 netDp2,567 netDroYak1,543 12592000 miRNA,353 127-163 genscan,206 12840038 anophelesEcores,181 13 anophelesEcores,177 chainAnoGam1,558 chainDp2,538 chainDroYak1,538 mzDy1Dp2Ag1_phast,625 mzDy1Dp2Ag1_phast,846 netAnoGam1,539 netDp2,563 netDroYak1,539 pscreen,135 139 mzDy1Dp2Ag1_phast,711 14 mzDy1Dp2Ag1_phast,796 14500911 chainAnoGam1,531 chainDp2,511 chainDroYak1,511 mzDy1Dp2Ag1_phast,757 netAnoGam1,512 netDp2,536 netDroYak1,512 14534192 augustusGene,340 14681350 est,734 intronEst,809 mrna,446 14681370 miRNA,286 15 flyreg,124 microsat,30 microsat,79 microsat,130 mzDy1Dp2Ag1_phast,666 refGene,275 simpleRepeat,90 xenoRefGene,227 15060014 mzDy1Dp2Ag1_phast,800 15238527 pscreen,231 15572468 flyreg,129 15608248 refGene,390 15634332 miRNA,309 1595-9 anophelesEcores,179 16 rmsk,321 160 blatFugu,95 16024819 mzDy1Dp2Ag1_phast,670 16381832 miRNA,267 167 pscreen,227 17 twinscan,174 1747-9 flyreg,127 18218656 augustusGene,315 19 augustusGene,335 1990 blastHg16KG,174 1995 mzDy1Dp2Ag1_phast,367 mzDy1Dp2Ag1_phast,709 1996 mzDy1Dp2Ag1_phast,365 mzDy1Dp2Ag1_phast,623 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 anophelesEcores,228 augustusGene,142 augustusGene,337 blatFugu,75 microsat,66 microsat,132 mzDy1Dp2Ag1_phast,712 netAnoGam1,109 netAnoGam1,114 netDp2,109 netDp2,114 netDroYak1,109 netDroYak1,114 pscreen,228 simpleRepeat,92 20 blatFugu,82 chainAnoGam1,528 chainDp2,508 chainDroYak1,508 gcPercent,6 gcPercent,29 mzDy1Dp2Ag1_phast,754 netAnoGam1,509 netDp2,533 netDroYak1,509 2000 anophelesEcores,31 anophelesEcores,225 rmsk,100 rmsk,319 2001 genomicSuperDups,214 genomicSuperDups,315 twinscan,132 twinscan,173 2002 blatFugu,5 blatFugu,243 chainAnoGam1,490 chainDp2,470 chainDroYak1,470 cytoBand,30 est,746 genomicSuperDups,231 genomicSuperDups,283 intronEst,821 miRNA,371 mrna,458 mzDy1Dp2Ag1_phast,818 refGene,350 xenoRefGene,303 2003 anophelesEcores,8 anophelesEcores,96 anophelesEcores,109 anophelesEcores,175 augustusGene,333 chainAnoGam1,7 chainAnoGam1,25 chainAnoGam1,524 chainAnoGam1,556 chainDp2,7 chainDp2,25 chainDp2,504 chainDp2,536 chainDroYak1,504 chainDroYak1,536 miRNA,347 mzDy1Dp2Ag1_phast,52 mzDy1Dp2Ag1_phast,65 mzDy1Dp2Ag1_phast,70 mzDy1Dp2Ag1_phast,750 mzDy1Dp2Ag1_phast,844 netAnoGam1,7 netAnoGam1,58 netAnoGam1,505 netAnoGam1,537 netDp2,7 netDp2,58 netDp2,408 netDp2,529 netDp2,561 netDroYak1,505 netDroYak1,537 2004 chainDroYak1,7 chainDroYak1,25 est,726 intronEst,801 miRNA,168 miRNA,278 mrna,438 mzDy1Dp2Ag1_phast,60 mzDy1Dp2Ag1_phast,794 netDroYak1,7 netDroYak1,58 pscreen,225 2005 flyreg,122 miRNA,172 miRNA,303 mzDy1Dp2Ag1_phast,371 mzDy1Dp2Ag1_phast,504 mzDy1Dp2Ag1_phast,664 mzDy1Dp2Ag1_phast,693 refGene,382 2006 miRNA,159 miRNA,259 2008 augustusGene,308 21 flyreg,125 215 blastHg16KG,177 233 anophelesEcores,204 235-8 anophelesEcores,229 24 augustusGene,311 25 anophelesEcores,227 genscan,225 xenoRefGene,262 268 genscan,226 27 microsat,131 simpleRepeat,91 272 miRNA,305 277-9 miRNA,351 297 genomicSuperDups,286 3 augustusGene,140 blastHg16KG,178 cytoBand,20 est,442 est,495 est,549 intronEst,108 intronEst,517 intronEst,570 intronEst,624 miRNA,71 miRNA,350 microsat,68 mzDy1Dp2Ag1_phast,217 netAnoGam1,121 netDp2,121 netDroYak1,121 3.0 blatFugu,7 blatFugu,202 3.1 anophelesEcores,115 augustusGene,24 3.2 bdgpGene,21 bdgpNonCoding,21 30 chainAnoGam1,526 chainDp2,506 chainDroYak1,506 mzDy1Dp2Ag1_phast,244 mzDy1Dp2Ag1_phast,752 netAnoGam1,507 netDp2,531 netDroYak1,507 319 blatFugu,86 32 est,729 intronEst,78 intronEst,804 miRNA,281 mrna,441 325-351 mzDy1Dp2Ag1_phast,695 33 refGene,385 34 miRNA,262 350 flyreg,37 379 blatFugu,83 39 pscreen,132 4 blatFugu,246 est,749 intronEst,824 miRNA,374 mrna,461 mzDy1Dp2Ag1_phast,797 refGene,353 xenoRefGene,306 4-mer blatFugu,178 40 pscreen,220 403-410 blastHg16KG,179 418-20 rmsk,323 5 augustusGene,312 blastHg16KG,176 est,439 est,480 est,506 intronEst,514 intronEst,555 intronEst,581 miRNA,69 5.7x blatFugu,60 500 est,35 genomicSuperDups,98 intronEst,46 5362 pscreen,127 5583 genomicSuperDups,287 573-80 microsat,133 simpleRepeat,93 59-73 miRNA,307 6 genomicSuperDups,318 60 blastHg16KG,110 blastHg16KG,122 blastHg16KG,130 637-44 augustusGene,313 656-64 blatFugu,247 est,750 intronEst,825 miRNA,375 mrna,462 refGene,354 xenoRefGene,307 666 pscreen,136 679 blatFugu,92 7 anophelesEcores,178 708-15 mzDy1Dp2Ag1_phast,798 7140 pscreen,122 750 est,629 intronEst,704 761-81 pscreen,229 7713447 mzDy1Dp2Ag1_phast,715 78-94 genscan,228 8 flyreg,126 mzDy1Dp2Ag1_phast,667 8583911 mzDy1Dp2Ag1_phast,629 9 genomicSuperDups,285 miRNA,349 rmsk,322 90 genomicSuperDups,42 genomicSuperDups,113 genomicSuperDups,156 9149143 genscan,230 93-104 mzDy1Dp2Ag1_phast,627 96 est,677 intronEst,752 mrna,391 refGene,310 98 genomicSuperDups,43 genomicSuperDups,49 genomicSuperDups,65 9862982 microsat,135 simpleRepeat,95 99 genomicSuperDups,50 genomicSuperDups,58 993-1005 mzDy1Dp2Ag1_phast,713 a anophelesEcores,5 anophelesEcores,46 anophelesEcores,53 anophelesEcores,59 anophelesEcores,190 augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blatFugu,56 blatFugu,142 blatFugu,182 chainAnoGam1,1 chainAnoGam1,4 chainAnoGam1,21 chainAnoGam1,35 chainAnoGam1,56 chainAnoGam1,80 chainAnoGam1,115 chainAnoGam1,119 chainAnoGam1,169 chainAnoGam1,299 chainAnoGam1,329 chainAnoGam1,331 chainAnoGam1,335 chainAnoGam1,341 chainAnoGam1,345 chainAnoGam1,356 chainAnoGam1,388 chainAnoGam1,499 chainAnoGam1,523 chainAnoGam1,539 chainDp2,35 chainDp2,106 chainDp2,160 chainDp2,320 chainDp2,326 chainDp2,332 chainDp2,336 chainDp2,347 chainDp2,368 chainDp2,479 chainDp2,503 chainDp2,519 chainDroYak1,35 chainDroYak1,106 chainDroYak1,160 chainDroYak1,320 chainDroYak1,326 chainDroYak1,332 chainDroYak1,336 chainDroYak1,347 chainDroYak1,368 chainDroYak1,479 chainDroYak1,503 chainDroYak1,519 est,118 est,135 est,170 est,196 est,377 est,429 est,433 est,559 est,585 est,593 est,646 est,665 flyreg,56 flyreg,64 flyreg,107 gap,30 gap,36 gap,47 gcPercent,28 genomicSuperDups,79 genomicSuperDups,107 genomicSuperDups,200 genscan,102 genscan,132 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,504 intronEst,508 intronEst,634 intronEst,660 intronEst,668 intronEst,721 intronEst,740 miRNA,60 miRNA,93 miRNA,98 miRNA,246 miRNA,340 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,360 mrna,379 mzDy1Dp2Ag1_phast,16 mzDy1Dp2Ag1_phast,27 mzDy1Dp2Ag1_phast,31 mzDy1Dp2Ag1_phast,67 mzDy1Dp2Ag1_phast,97 mzDy1Dp2Ag1_phast,116 mzDy1Dp2Ag1_phast,214 mzDy1Dp2Ag1_phast,218 mzDy1Dp2Ag1_phast,236 mzDy1Dp2Ag1_phast,260 mzDy1Dp2Ag1_phast,308 mzDy1Dp2Ag1_phast,329 mzDy1Dp2Ag1_phast,331 mzDy1Dp2Ag1_phast,348 mzDy1Dp2Ag1_phast,374 mzDy1Dp2Ag1_phast,378 mzDy1Dp2Ag1_phast,384 mzDy1Dp2Ag1_phast,426 mzDy1Dp2Ag1_phast,436 mzDy1Dp2Ag1_phast,473 mzDy1Dp2Ag1_phast,607 mzDy1Dp2Ag1_phast,631 mzDy1Dp2Ag1_phast,674 mzDy1Dp2Ag1_phast,698 mzDy1Dp2Ag1_phast,725 mzDy1Dp2Ag1_phast,749 mzDy1Dp2Ag1_phast,827 netAnoGam1,1 netAnoGam1,4 netAnoGam1,21 netAnoGam1,47 netAnoGam1,141 netAnoGam1,151 netAnoGam1,155 netAnoGam1,222 netAnoGam1,239 netAnoGam1,242 netAnoGam1,292 netAnoGam1,306 netAnoGam1,312 netAnoGam1,318 netAnoGam1,322 netAnoGam1,325 netAnoGam1,353 netAnoGam1,480 netAnoGam1,504 netAnoGam1,520 netDp2,141 netDp2,151 netDp2,155 netDp2,222 netDp2,239 netDp2,242 netDp2,292 netDp2,306 netDp2,312 netDp2,318 netDp2,322 netDp2,325 netDp2,353 netDp2,504 netDp2,528 netDp2,544 netDroYak1,141 netDroYak1,151 netDroYak1,155 netDroYak1,222 netDroYak1,239 netDroYak1,242 netDroYak1,292 netDroYak1,306 netDroYak1,312 netDroYak1,318 netDroYak1,322 netDroYak1,325 netDroYak1,353 netDroYak1,480 netDroYak1,504 netDroYak1,520 pscreen,82 pscreen,90 pscreen,99 pscreen,152 refGene,279 refGene,298 refGene,369 rmsk,36 rmsk,56 rmsk,196 rmsk,308 simpleRepeat,79 twinscan,21 twinscan,42 twinscan,92 xenoRefGene,231 xenoRefGene,250 a.gambiae mzDy1Dp2Ag1_phast,5 a91-90-25-100 chainAnoGam1,381 ab augustusGene,3 augustusGene,16 about est,34 est,403 genscan,127 intronEst,45 intronEst,478 microsat,98 mrna,340 mzDy1Dp2Ag1_phast,232 mzDy1Dp2Ag1_phast,495 netAnoGam1,147 netAnoGam1,160 netAnoGam1,342 netDp2,147 netDp2,160 netDp2,342 netDroYak1,147 netDroYak1,160 netDroYak1,342 refGene,228 simpleRepeat,59 twinscan,118 xenoRefGene,180 above netAnoGam1,219 netAnoGam1,231 netAnoGam1,251 netDp2,219 netDp2,231 netDp2,251 netDroYak1,219 netDroYak1,231 netDroYak1,251 abundance chainAnoGam1,151 chainDp2,142 chainDroYak1,142 acad chainAnoGam1,519 chainDp2,499 chainDroYak1,499 mzDy1Dp2Ag1_phast,745 netAnoGam1,500 netDp2,524 netDroYak1,500 acceptor genscan,32 access flyreg,25 accessed refGene,125 accession refGene,166 refGene,178 xenoRefGene,118 xenoRefGene,130 according augustusGene,114 accuracy twinscan,38 acgt chainAnoGam1,380 acid blastHg16KG,64 acids blastHg16KG,136 est,724 intronEst,799 miRNA,257 miRNA,276 microsat,126 mrna,436 refGene,380 simpleRepeat,86 across mzDy1Dp2Ag1_phast,83 adam mzDy1Dp2Ag1_phast,585 adams genomicSuperDups,267 adding mzDy1Dp2Ag1_phast,303 additional rmsk,254 additions refGene,54 adjacent mzDy1Dp2Ag1_phast,452 advantage twinscan,30 advice chainAnoGam1,419 chainAnoGam1,451 chainDp2,399 chainDp2,431 chainDroYak1,399 chainDroYak1,431 netAnoGam1,442 netDp2,466 netDroYak1,442 af mzDy1Dp2Ag1_phast,770 affine chainAnoGam1,45 chainDp2,45 chainDroYak1,45 after netAnoGam1,400 netDp2,400 netDroYak1,400 ag intronEst,85 against est,614 intronEst,37 intronEst,689 miRNA,128 mrna,333 mrna,352 refGene,261 xenoRefGene,213 aj miRNA,248 al anophelesEcores,30 anophelesEcores,95 anophelesEcores,159 anophelesEcores,208 flyreg,51 genomicSuperDups,213 genomicSuperDups,230 miRNA,158 miRNA,339 mzDy1Dp2Ag1_phast,503 mzDy1Dp2Ag1_phast,651 mzDy1Dp2Ag1_phast,782 pscreen,178 pscreen,209 twinscan,131 algorithm augustusGene,130 twinscan,124 align chainAnoGam1,167 chainDp2,158 chainDroYak1,158 est,644 genomicSuperDups,105 intronEst,719 aligned blastHg16KG,48 blastHg16KG,72 chainAnoGam1,305 chainDp2,296 chainDroYak1,296 est,613 est,649 intronEst,36 intronEst,149 intronEst,688 intronEst,724 miRNA,127 mrna,351 mrna,363 mzDy1Dp2Ag1_phast,100 mzDy1Dp2Ag1_phast,292 refGene,260 refGene,282 xenoRefGene,212 xenoRefGene,234 aligner mzDy1Dp2Ag1_phast,791 aligning chainAnoGam1,104 chainAnoGam1,250 chainAnoGam1,280 chainDp2,95 chainDp2,241 chainDp2,271 chainDroYak1,95 chainDroYak1,241 chainDroYak1,271 est,389 intronEst,464 mzDy1Dp2Ag1_phast,783 alignment blastHg16KG,168 blatFugu,184 blatFugu,239 chainAnoGam1,227 chainDp2,218 chainDroYak1,218 est,58 est,654 est,742 intronEst,136 intronEst,729 intronEst,817 miRNA,367 mrna,39 mrna,368 mrna,454 mzDy1Dp2Ag1_phast,161 mzDy1Dp2Ag1_phast,182 mzDy1Dp2Ag1_phast,253 mzDy1Dp2Ag1_phast,402 mzDy1Dp2Ag1_phast,508 mzDy1Dp2Ag1_phast,529 mzDy1Dp2Ag1_phast,542 netAnoGam1,11 netDp2,11 netDroYak1,11 refGene,271 refGene,287 refGene,346 xenoRefGene,223 xenoRefGene,239 xenoRefGene,299 alignments augustusGene,300 blastHg16KG,19 blatFugu,11 blatFugu,166 blatFugu,219 chainAnoGam1,12 chainAnoGam1,19 chainAnoGam1,319 chainAnoGam1,327 chainAnoGam1,355 chainAnoGam1,486 chainAnoGam1,551 chainDp2,12 chainDp2,19 chainDp2,310 chainDp2,318 chainDp2,346 chainDp2,466 chainDp2,531 chainDroYak1,12 chainDroYak1,19 chainDroYak1,310 chainDroYak1,318 chainDroYak1,346 chainDroYak1,466 chainDroYak1,531 est,16 est,663 genomicSuperDups,188 genomicSuperDups,192 genomicSuperDups,196 intronEst,17 intronEst,738 mrna,17 mrna,377 mzDy1Dp2Ag1_phast,7 mzDy1Dp2Ag1_phast,38 mzDy1Dp2Ag1_phast,90 mzDy1Dp2Ag1_phast,108 mzDy1Dp2Ag1_phast,234 mzDy1Dp2Ag1_phast,289 mzDy1Dp2Ag1_phast,300 mzDy1Dp2Ag1_phast,313 mzDy1Dp2Ag1_phast,814 mzDy1Dp2Ag1_phast,839 netAnoGam1,134 netAnoGam1,258 netAnoGam1,532 netDp2,134 netDp2,258 netDp2,556 netDroYak1,134 netDroYak1,258 netDroYak1,532 refGene,296 rmsk,265 xenoRefGene,248 all augustusGene,207 blatFugu,61 chainAnoGam1,326 chainDp2,317 chainDroYak1,317 est,192 est,246 est,290 est,385 est,449 genomicSuperDups,176 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,524 mrna,138 mrna,192 mrna,236 mzDy1Dp2Ag1_phast,84 rmsk,65 allow mzDy1Dp2Ag1_phast,127 allowed est,625 intronEst,700 allows augustusGene,168 chainAnoGam1,40 chainDp2,40 chainDroYak1,40 est,380 intronEst,455 mrna,326 refGene,197 xenoRefGene,149 alone augustusGene,33 along mzDy1Dp2Ag1_phast,444 already netAnoGam1,303 netDp2,303 netDroYak1,303 also blastHg16KG,138 chainAnoGam1,51 chainDp2,51 chainDroYak1,51 est,262 est,370 est,562 flyreg,60 intronEst,337 intronEst,445 intronEst,637 mrna,208 mrna,316 pscreen,151 alter est,129 intronEst,204 mrna,75 alternative augustusGene,122 alternatives-from-sampling augustusGene,131 altschul blastHg16KG,156 alus rmsk,131 am genomicSuperDups,294 ambros miRNA,318 amino blastHg16KG,63 blastHg16KG,135 among gap,50 mzDy1Dp2Ag1_phast,614 amount rmsk,185 amsterdam genscan,201 an anophelesEcores,40 anophelesEcores,51 blastHg16KG,92 chainAnoGam1,123 chainAnoGam1,150 chainAnoGam1,156 chainDp2,114 chainDp2,141 chainDp2,147 chainDroYak1,114 chainDroYak1,141 chainDroYak1,147 est,411 est,458 est,541 gap,24 genomicSuperDups,120 genomicSuperDups,133 intronEst,61 intronEst,486 intronEst,533 intronEst,616 mzDy1Dp2Ag1_phast,279 refGene,191 refGene,270 rmsk,311 xenoRefGene,143 xenoRefGene,222 analysis anophelesEcores,217 genomicSuperDups,134 analyze microsat,122 simpleRepeat,82 and anophelesEcores,81 anophelesEcores,122 anophelesEcores,164 augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 bdgpGene,8 bdgpNonCoding,8 blastHg16KG,11 blastHg16KG,26 blastHg16KG,126 blatFugu,51 blatFugu,193 chainAnoGam1,58 chainAnoGam1,73 chainAnoGam1,199 chainAnoGam1,205 chainAnoGam1,217 chainAnoGam1,230 chainAnoGam1,308 chainAnoGam1,334 chainAnoGam1,343 chainAnoGam1,415 chainAnoGam1,430 chainAnoGam1,455 chainAnoGam1,461 chainAnoGam1,472 chainAnoGam1,509 chainAnoGam1,514 chainDp2,58 chainDp2,73 chainDp2,190 chainDp2,196 chainDp2,208 chainDp2,221 chainDp2,299 chainDp2,325 chainDp2,334 chainDp2,395 chainDp2,410 chainDp2,435 chainDp2,441 chainDp2,452 chainDp2,489 chainDp2,494 chainDroYak1,58 chainDroYak1,73 chainDroYak1,190 chainDroYak1,196 chainDroYak1,208 chainDroYak1,221 chainDroYak1,299 chainDroYak1,325 chainDroYak1,334 chainDroYak1,395 chainDroYak1,410 chainDroYak1,435 chainDroYak1,441 chainDroYak1,452 chainDroYak1,489 chainDroYak1,494 cytoBand,6 cytoBand,38 cytoBandIdeo,11 est,10 est,26 est,48 est,88 est,132 est,282 est,418 est,432 est,440 est,568 est,674 flyreg,9 flyreg,32 gap,5 gcPercent,10 gcPercent,23 genomicSuperDups,11 genomicSuperDups,106 genomicSuperDups,127 genomicSuperDups,154 genomicSuperDups,174 genomicSuperDups,194 genomicSuperDups,246 genomicSuperDups,304 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,493 intronEst,507 intronEst,515 intronEst,643 intronEst,749 miRNA,6 miRNA,19 miRNA,70 miRNA,103 miRNA,119 miRNA,143 miRNA,169 miRNA,218 miRNA,253 miRNA,293 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,388 mzDy1Dp2Ag1_phast,25 mzDy1Dp2Ag1_phast,96 mzDy1Dp2Ag1_phast,164 mzDy1Dp2Ag1_phast,208 mzDy1Dp2Ag1_phast,301 mzDy1Dp2Ag1_phast,307 mzDy1Dp2Ag1_phast,350 mzDy1Dp2Ag1_phast,363 mzDy1Dp2Ag1_phast,369 mzDy1Dp2Ag1_phast,383 mzDy1Dp2Ag1_phast,435 mzDy1Dp2Ag1_phast,483 mzDy1Dp2Ag1_phast,556 mzDy1Dp2Ag1_phast,563 mzDy1Dp2Ag1_phast,576 mzDy1Dp2Ag1_phast,601 mzDy1Dp2Ag1_phast,659 mzDy1Dp2Ag1_phast,735 mzDy1Dp2Ag1_phast,740 netAnoGam1,41 netAnoGam1,66 netAnoGam1,123 netAnoGam1,269 netAnoGam1,347 netAnoGam1,379 netAnoGam1,390 netAnoGam1,399 netAnoGam1,409 netAnoGam1,438 netAnoGam1,453 netAnoGam1,460 netAnoGam1,471 netAnoGam1,490 netAnoGam1,495 netDp2,41 netDp2,66 netDp2,123 netDp2,269 netDp2,347 netDp2,379 netDp2,390 netDp2,399 netDp2,433 netDp2,462 netDp2,477 netDp2,484 netDp2,495 netDp2,514 netDp2,519 netDroYak1,41 netDroYak1,66 netDroYak1,123 netDroYak1,269 netDroYak1,347 netDroYak1,379 netDroYak1,390 netDroYak1,399 netDroYak1,409 netDroYak1,438 netDroYak1,453 netDroYak1,460 netDroYak1,471 netDroYak1,490 netDroYak1,495 pscreen,11 pscreen,148 refGene,6 refGene,19 refGene,45 refGene,55 refGene,66 refGene,100 refGene,177 refGene,202 refGene,239 refGene,307 refGene,334 refGene,377 rmsk,7 rmsk,28 rmsk,108 rmsk,191 rmsk,222 rmsk,289 rmsk,295 rmsk,310 simpleRepeat,9 simpleRepeat,42 twinscan,11 twinscan,41 twinscan,53 twinscan,73 twinscan,87 twinscan,98 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,191 xenoRefGene,259 xenoRefGene,286 annotated bdgpGene,17 bdgpNonCoding,17 pscreen,138 rmsk,67 annotation flyreg,34 flyreg,110 miRNA,317 miRNA,345 mzDy1Dp2Ag1_phast,48 netAnoGam1,53 netDp2,53 netDroYak1,53 rmsk,38 annotations anophelesEcores,168 bdgpGene,29 bdgpNonCoding,29 genscan,120 anogam1 anophelesEcores,11 chainAnoGam1,10 chainAnoGam1,23 chainAnoGam1,28 mzDy1Dp2Ag1_phast,71 netAnoGam1,10 netAnoGam1,61 netAnoGam1,62 anopheles anophelesEcores,1 anophelesEcores,84 anophelesEcores,124 anophelesEcores,165 any est,305 est,511 intronEst,380 intronEst,586 mrna,251 apply est,188 intronEst,263 mrna,134 approach mzDy1Dp2Ag1_phast,611 appropriate refGene,160 xenoRefGene,112 approximate pscreen,39 apr blatFugu,244 chainDroYak1,6 chainDroYak1,24 est,747 flyreg,123 genscan,224 intronEst,822 miRNA,372 mrna,459 mzDy1Dp2Ag1_phast,59 mzDy1Dp2Ag1_phast,795 netDroYak1,6 netDroYak1,57 refGene,351 xenoRefGene,304 archana genomicSuperDups,242 are augustusGene,27 blatFugu,63 blatFugu,151 chainAnoGam1,111 chainAnoGam1,182 chainAnoGam1,193 chainAnoGam1,239 chainAnoGam1,395 chainDp2,102 chainDp2,173 chainDp2,184 chainDp2,230 chainDp2,375 chainDroYak1,102 chainDroYak1,173 chainDroYak1,184 chainDroYak1,230 chainDroYak1,375 est,30 est,67 est,149 est,159 est,684 gcPercent,38 genomicSuperDups,31 genscan,25 genscan,160 intronEst,41 intronEst,224 intronEst,234 intronEst,759 miRNA,24 miRNA,37 miRNA,47 miRNA,56 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 mzDy1Dp2Ag1_phast,109 mzDy1Dp2Ag1_phast,531 netAnoGam1,77 netAnoGam1,98 netAnoGam1,105 netAnoGam1,188 netDp2,77 netDp2,98 netDp2,105 netDp2,188 netDroYak1,77 netDroYak1,98 netDroYak1,105 netDroYak1,188 refGene,36 refGene,153 refGene,242 rmsk,43 rmsk,240 rmsk,247 rmsk,263 rmsk,271 simpleRepeat,49 xenoRefGene,40 xenoRefGene,105 xenoRefGene,194 areas gcPercent,56 arian chainAnoGam1,428 chainDp2,408 chainDroYak1,408 netAnoGam1,451 netDp2,475 netDroYak1,451 rmsk,16 rmsk,287 arrow pscreen,56 arrows pscreen,36 pscreen,65 pscreen,70 as anophelesEcores,112 augustusGene,77 augustusGene,79 blatFugu,158 blatFugu,163 est,558 gap,29 genomicSuperDups,19 genomicSuperDups,220 genscan,35 genscan,37 intronEst,633 microsat,21 mzDy1Dp2Ag1_phast,86 mzDy1Dp2Ag1_phast,88 mzDy1Dp2Ag1_phast,510 mzDy1Dp2Ag1_phast,637 netAnoGam1,150 netAnoGam1,190 netAnoGam1,213 netAnoGam1,228 netAnoGam1,296 netAnoGam1,351 netDp2,150 netDp2,190 netDp2,213 netDp2,228 netDp2,296 netDp2,351 netDroYak1,150 netDroYak1,190 netDroYak1,213 netDroYak1,228 netDroYak1,296 netDroYak1,351 rmsk,53 rmsk,55 ask refGene,58 aspects mzDy1Dp2Ag1_phast,267 assembler blatFugu,39 assemblies augustusGene,196 augustusGene,237 chainAnoGam1,238 chainDp2,229 chainDroYak1,229 gap,51 mzDy1Dp2Ag1_phast,42 assembly augustusGene,197 blatFugu,21 blatFugu,33 blatFugu,80 chainAnoGam1,87 chainAnoGam1,121 chainAnoGam1,129 chainDp2,112 chainDp2,120 chainDroYak1,112 chainDroYak1,120 gap,25 genomicSuperDups,223 genomicSuperDups,312 netAnoGam1,63 netDp2,63 netDp2,417 netDroYak1,63 assessing anophelesEcores,160 assigned mzDy1Dp2Ag1_phast,316 associated est,110 gcPercent,53 intronEst,185 pscreen,218 rmsk,194 simpleRepeat,51 at anophelesEcores,33 anophelesEcores,68 anophelesEcores,131 blastHg16KG,128 blatFugu,47 chainAnoGam1,404 chainAnoGam1,439 chainAnoGam1,444 chainDp2,384 chainDp2,419 chainDp2,424 chainDroYak1,384 chainDroYak1,419 chainDroYak1,424 est,510 est,555 est,675 est,694 gcPercent,62 genomicSuperDups,87 genomicSuperDups,96 genomicSuperDups,111 genomicSuperDups,249 intronEst,67 intronEst,76 intronEst,101 intronEst,585 intronEst,630 intronEst,750 intronEst,769 miRNA,109 microsat,28 microsat,77 mrna,389 mrna,406 mzDy1Dp2Ag1_phast,180 mzDy1Dp2Ag1_phast,235 mzDy1Dp2Ag1_phast,344 mzDy1Dp2Ag1_phast,392 mzDy1Dp2Ag1_phast,451 mzDy1Dp2Ag1_phast,533 mzDy1Dp2Ag1_phast,549 mzDy1Dp2Ag1_phast,581 mzDy1Dp2Ag1_phast,587 mzDy1Dp2Ag1_phast,597 netAnoGam1,107 netAnoGam1,291 netAnoGam1,414 netAnoGam1,427 netDp2,107 netDp2,291 netDp2,425 netDp2,438 netDp2,451 netDroYak1,107 netDroYak1,291 netDroYak1,414 netDroYak1,427 pscreen,45 pscreen,86 pscreen,125 refGene,114 refGene,308 refGene,324 twinscan,48 twinscan,147 xenoRefGene,93 xenoRefGene,260 xenoRefGene,276 attempt est,542 intronEst,617 aubrey cytoBand,24 cytoBand,39 aug blatFugu,4 chainDp2,6 chainDp2,24 genomicSuperDups,284 mzDy1Dp2Ag1_phast,64 mzDy1Dp2Ag1_phast,665 netDp2,6 netDp2,57 netDp2,407 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 aury anophelesEcores,148 autocorrelated mzDy1Dp2Ag1_phast,443 available augustusGene,239 flyreg,55 pscreen,95 rmsk,73 rmsk,225 rmsk,242 axt chainAnoGam1,311 chainAnoGam1,318 chainDp2,302 chainDp2,309 chainDroYak1,302 chainDroYak1,309 axtbest mzDy1Dp2Ag1_phast,572 axtchain chainAnoGam1,323 chainAnoGam1,435 chainDp2,314 chainDp2,415 chainDroYak1,314 chainDroYak1,415 mzDy1Dp2Ag1_phast,573 b anophelesEcores,147 miRNA,321 bac blatFugu,67 baertsch augustusGene,290 chainAnoGam1,471 chainAnoGam1,496 chainAnoGam1,542 chainDp2,451 chainDp2,476 chainDp2,522 chainDroYak1,451 chainDroYak1,476 chainDroYak1,522 mzDy1Dp2Ag1_phast,722 mzDy1Dp2Ag1_phast,773 mzDy1Dp2Ag1_phast,830 netAnoGam1,470 netAnoGam1,477 netAnoGam1,523 netDp2,494 netDp2,501 netDp2,547 netDroYak1,470 netDroYak1,477 netDroYak1,523 bailey genomicSuperDups,211 genomicSuperDups,228 genomicSuperDups,255 genomicSuperDups,291 band cytoBand,2 cytoBandIdeo,2 bands cytoBand,4 cytoBandIdeo,5 bartel miRNA,320 miRNA,322 base blatFugu,88 blatFugu,97 est,375 est,658 est,666 est,678 gcPercent,31 intronEst,450 intronEst,733 intronEst,741 intronEst,753 mrna,372 mrna,380 mrna,392 mzDy1Dp2Ag1_phast,157 refGene,291 refGene,299 refGene,311 rmsk,187 rmsk,189 rmsk,192 xenoRefGene,243 xenoRefGene,251 xenoRefGene,263 base-display mzDy1Dp2Ag1_phast,151 base-paired miRNA,148 based augustusGene,28 chainAnoGam1,241 chainAnoGam1,267 chainDp2,232 chainDp2,258 chainDroYak1,232 chainDroYak1,258 flyreg,62 genscan,26 miRNA,146 mzDy1Dp2Ag1_phast,29 mzDy1Dp2Ag1_phast,327 bases est,36 est,386 est,631 gcPercent,26 genomicSuperDups,6 intronEst,47 intronEst,79 intronEst,461 intronEst,706 mzDy1Dp2Ag1_phast,248 basic blastHg16KG,166 bateman miRNA,245 baylor chainDp2,8 chainDp2,26 netDp2,8 netDp2,59 netDp2,426 bdgp anophelesEcores,113 mzDy1Dp2Ag1_phast,53 pscreen,1 pscreen,3 pscreen,31 pscreen,165 pscreen,211 be augustusGene,99 chainAnoGam1,68 chainDp2,68 chainDroYak1,68 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,490 est,598 genomicSuperDups,82 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,565 intronEst,673 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 mzDy1Dp2Ag1_phast,257 mzDy1Dp2Ag1_phast,442 mzDy1Dp2Ag1_phast,449 mzDy1Dp2Ag1_phast,498 netAnoGam1,117 netDp2,117 netDroYak1,117 pscreen,112 refGene,109 rmsk,235 rmsk,257 simpleRepeat,44 twinscan,46 xenoRefGene,88 bears est,94 intronEst,169 because blatFugu,137 est,590 intronEst,665 become genomicSuperDups,218 been intronEst,8 pscreen,50 rmsk,70 before blatFugu,197 est,527 intronEst,602 netAnoGam1,398 netDp2,398 netDroYak1,398 beginning mzDy1Dp2Ag1_phast,295 bejerano mzDy1Dp2Ag1_phast,632 bellen pscreen,176 pscreen,188 below chainAnoGam1,387 chainDp2,367 chainDroYak1,367 flyreg,53 genscan,154 genscan,168 miRNA,177 pscreen,180 rmsk,105 twinscan,137 benson est,711 intronEst,786 microsat,102 microsat,112 microsat,114 mrna,423 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 bergman flyreg,48 flyreg,83 flyreg,96 bernot anophelesEcores,189 best blastHg16KG,103 est,673 intronEst,748 mrna,387 netAnoGam1,20 netAnoGam1,200 netDp2,20 netDp2,200 netDroYak1,20 netDroYak1,200 refGene,306 xenoRefGene,258 best-in-genome mzDy1Dp2Ag1_phast,286 better est,74 mrna,55 between anophelesEcores,72 chainAnoGam1,328 chainDp2,319 chainDroYak1,319 est,17 est,85 intronEst,18 intronEst,160 miRNA,101 mrna,18 netAnoGam1,345 netDp2,345 netDroYak1,345 binding flyreg,114 biocomput chainAnoGam1,489 chainDp2,469 chainDroYak1,469 mzDy1Dp2Ag1_phast,817 bioinformatics augustusGene,307 augustusGene,332 flyreg,121 mzDy1Dp2Ag1_phast,570 twinscan,172 biol blastHg16KG,173 genscan,222 mzDy1Dp2Ag1_phast,621 biologie miRNA,189 biology genscan,200 birds augustusGene,203 bj genomicSuperDups,298 black gap,15 miRNA,50 blanchette mzDy1Dp2Ag1_phast,761 blast blastHg16KG,147 blastHg16KG,154 blast-like blatFugu,238 est,741 intronEst,816 miRNA,366 mrna,453 refGene,345 xenoRefGene,298 blastz chainAnoGam1,307 chainAnoGam1,401 chainAnoGam1,553 chainDp2,298 chainDp2,381 chainDp2,533 chainDroYak1,298 chainDroYak1,381 chainDroYak1,533 mzDy1Dp2Ag1_phast,287 mzDy1Dp2Ag1_phast,555 mzDy1Dp2Ag1_phast,803 mzDy1Dp2Ag1_phast,841 netAnoGam1,257 netAnoGam1,424 netAnoGam1,534 netDp2,257 netDp2,448 netDp2,558 netDroYak1,257 netDroYak1,424 netDroYak1,534 blat blastHg16KG,55 blastHg16KG,180 blatFugu,2 blatFugu,10 blatFugu,170 blatFugu,199 blatFugu,218 est,618 est,627 est,739 intronEst,693 intronEst,702 intronEst,814 miRNA,132 miRNA,360 miRNA,364 mrna,357 mrna,451 refGene,267 xenoRefGene,219 xenoRefGene,296 blat--the blatFugu,237 refGene,344 block anophelesEcores,37 blocks anophelesEcores,43 chainAnoGam1,352 chainAnoGam1,373 chainDp2,343 chainDp2,364 chainDroYak1,343 chainDroYak1,364 miRNA,28 miRNA,41 blockset mzDy1Dp2Ag1_phast,790 bloomington pscreen,105 both chainAnoGam1,55 chainAnoGam1,77 chainAnoGam1,141 chainDp2,55 chainDp2,77 chainDp2,132 chainDroYak1,55 chainDroYak1,77 chainDroYak1,132 genomicSuperDups,124 mzDy1Dp2Ag1_phast,338 mzDy1Dp2Ag1_phast,489 netAnoGam1,388 netDp2,388 netDroYak1,388 refGene,174 refGene,236 xenoRefGene,126 xenoRefGene,188 boundaries blastHg16KG,60 bouneau anophelesEcores,193 box chainAnoGam1,291 chainDp2,282 chainDroYak1,282 est,208 est,219 est,259 intronEst,283 intronEst,294 intronEst,334 miRNA,108 mrna,154 mrna,165 mrna,205 netAnoGam1,142 netDp2,142 netDroYak1,142 refGene,255 xenoRefGene,207 boxes chainAnoGam1,92 chainAnoGam1,102 chainDp2,83 chainDp2,93 chainDroYak1,83 chainDroYak1,93 est,179 gap,16 intronEst,254 mrna,125 netAnoGam1,131 netDp2,131 netDroYak1,131 bp genomicSuperDups,99 branch mzDy1Dp2Ag1_phast,419 branch-point augustusGene,55 brent twinscan,142 twinscan,163 brey anophelesEcores,154 brian blastHg16KG,200 brottier anophelesEcores,201 browser anophelesEcores,121 blatFugu,216 chainAnoGam1,459 chainDp2,439 chainDroYak1,439 est,226 est,339 est,356 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netAnoGam1,458 netDp2,482 netDroYak1,458 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 miRNA,324 but blastHg16KG,97 est,447 est,504 est,557 intronEst,522 intronEst,579 intronEst,632 netAnoGam1,233 netDp2,233 netDroYak1,233 rmsk,270 button chainAnoGam1,262 chainDp2,253 chainDroYak1,253 refGene,129 by anophelesEcores,25 anophelesEcores,45 anophelesEcores,117 anophelesEcores,215 augustusGene,147 augustusGene,266 augustusGene,282 bdgpGene,18 bdgpNonCoding,18 blastHg16KG,7 blastHg16KG,183 blastHg16KG,196 blatFugu,24 blatFugu,225 chainAnoGam1,70 chainAnoGam1,95 chainAnoGam1,232 chainAnoGam1,295 chainAnoGam1,408 chainAnoGam1,427 chainAnoGam1,447 chainAnoGam1,469 chainDp2,70 chainDp2,86 chainDp2,223 chainDp2,286 chainDp2,388 chainDp2,407 chainDp2,427 chainDp2,449 chainDroYak1,70 chainDroYak1,86 chainDroYak1,223 chainDroYak1,286 chainDroYak1,388 chainDroYak1,407 chainDroYak1,427 chainDroYak1,449 cytoBand,23 est,457 est,626 est,707 flyreg,68 gap,14 genomicSuperDups,160 genomicSuperDups,237 genscan,20 genscan,88 genscan,121 intronEst,87 intronEst,532 intronEst,701 intronEst,782 miRNA,26 miRNA,39 miRNA,183 miRNA,298 microsat,110 mrna,419 mzDy1Dp2Ag1_phast,319 mzDy1Dp2Ag1_phast,406 mzDy1Dp2Ag1_phast,558 mzDy1Dp2Ag1_phast,578 mzDy1Dp2Ag1_phast,584 mzDy1Dp2Ag1_phast,594 netAnoGam1,101 netAnoGam1,119 netAnoGam1,305 netAnoGam1,421 netAnoGam1,431 netAnoGam1,450 netAnoGam1,468 netDp2,101 netDp2,119 netDp2,305 netDp2,419 netDp2,445 netDp2,455 netDp2,474 netDp2,492 netDroYak1,101 netDroYak1,119 netDroYak1,305 netDroYak1,421 netDroYak1,431 netDroYak1,450 netDroYak1,468 refGene,150 refGene,155 refGene,219 refGene,234 refGene,331 refGene,336 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 twinscan,78 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,186 xenoRefGene,283 xenoRefGene,288 c anophelesEcores,141 anophelesEcores,153 anophelesEcores,192 anophelesEcores,196 anophelesEcores,198 gcPercent,24 genscan,181 genscan,208 mzDy1Dp2Ag1_phast,766 c-90100-100-25 chainAnoGam1,382 c.m flyreg,49 caenorhabditis augustusGene,212 california chainAnoGam1,443 chainDp2,423 chainDroYak1,423 netAnoGam1,418 netDp2,442 netDroYak1,418 cambridge miRNA,227 can augustusGene,98 chainAnoGam1,50 chainAnoGam1,67 chainDp2,50 chainDp2,67 chainDroYak1,50 chainDroYak1,67 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 mzDy1Dp2Ag1_phast,488 mzDy1Dp2Ag1_phast,497 pscreen,111 refGene,108 simpleRepeat,35 twinscan,45 xenoRefGene,87 canonical intronEst,70 cap-selected est,520 intronEst,595 cap-selection est,529 intronEst,604 carlson flyreg,98 pscreen,196 carrington miRNA,326 cases chainAnoGam1,163 chainDp2,154 chainDroYak1,154 netAnoGam1,88 netDp2,88 netDroYak1,88 casey flyreg,82 categorized netAnoGam1,189 netDp2,189 netDroYak1,189 cauldron chainAnoGam1,506 chainDp2,486 chainDroYak1,486 mzDy1Dp2Ag1_phast,732 netAnoGam1,487 netDp2,511 netDroYak1,487 cause netAnoGam1,171 netDp2,171 netDroYak1,171 caused chainAnoGam1,69 chainDp2,69 chainDroYak1,69 cb miRNA,325 cdna augustusGene,299 est,422 est,425 intronEst,497 intronEst,500 celera blatFugu,52 cells est,417 intronEst,492 celniker flyreg,100 center netDp2,424 pscreen,107 cerevisiae augustusGene,222 certain rmsk,260 chain chainAnoGam1,3 chainAnoGam1,89 chainDp2,3 chainDp2,80 chainDroYak1,3 chainDroYak1,80 mzDy1Dp2Ag1_phast,718 netAnoGam1,25 netAnoGam1,94 netAnoGam1,149 netAnoGam1,265 netAnoGam1,308 netAnoGam1,319 netAnoGam1,327 netAnoGam1,332 netAnoGam1,355 netAnoGam1,364 netDp2,25 netDp2,94 netDp2,149 netDp2,265 netDp2,308 netDp2,319 netDp2,327 netDp2,332 netDp2,355 netDp2,364 netDroYak1,25 netDroYak1,94 netDroYak1,149 netDroYak1,265 netDroYak1,308 netDroYak1,319 netDroYak1,327 netDroYak1,332 netDroYak1,355 netDroYak1,364 chained blastHg16KG,8 blastHg16KG,89 chainAnoGam1,11 chainDp2,11 chainDroYak1,11 chainnet mzDy1Dp2Ag1_phast,574 netAnoGam1,282 netAnoGam1,407 netDp2,282 netDp2,431 netDroYak1,282 netDroYak1,407 chains blastHg16KG,105 blastHg16KG,118 chainAnoGam1,166 chainAnoGam1,178 chainAnoGam1,189 chainAnoGam1,235 chainAnoGam1,274 chainAnoGam1,370 chainAnoGam1,385 chainAnoGam1,394 chainAnoGam1,466 chainDp2,157 chainDp2,169 chainDp2,180 chainDp2,226 chainDp2,265 chainDp2,361 chainDp2,365 chainDp2,374 chainDp2,446 chainDroYak1,157 chainDroYak1,169 chainDroYak1,180 chainDroYak1,226 chainDroYak1,265 chainDroYak1,361 chainDroYak1,365 chainDroYak1,374 chainDroYak1,446 netAnoGam1,76 netAnoGam1,81 netAnoGam1,103 netAnoGam1,115 netAnoGam1,122 netAnoGam1,179 netAnoGam1,253 netAnoGam1,274 netAnoGam1,289 netAnoGam1,349 netAnoGam1,380 netDp2,76 netDp2,81 netDp2,103 netDp2,115 netDp2,122 netDp2,179 netDp2,253 netDp2,274 netDp2,289 netDp2,349 netDp2,380 netDroYak1,76 netDroYak1,81 netDroYak1,103 netDroYak1,115 netDroYak1,122 netDroYak1,179 netDroYak1,253 netDroYak1,274 netDroYak1,289 netDroYak1,349 netDroYak1,380 change est,125 intronEst,200 mrna,71 changes mzDy1Dp2Ag1_phast,355 characteristic est,319 intronEst,394 mrna,265 check chainAnoGam1,257 chainDp2,248 chainDroYak1,248 checkboxes mzDy1Dp2Ag1_phast,121 chen miRNA,328 cheng genomicSuperDups,239 chiaromonte chainAnoGam1,476 chainDp2,456 chainDroYak1,456 mzDy1Dp2Ag1_phast,804 chicken augustusGene,204 augustusGene,262 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 chosen est,337 intronEst,412 mrna,283 chr4 chainAnoGam1,289 chainDp2,280 chainDroYak1,280 chris genscan,21 genscan,172 chromosome chainAnoGam1,215 chainAnoGam1,244 chainAnoGam1,269 chainAnoGam1,277 chainAnoGam1,287 chainAnoGam1,296 chainAnoGam1,333 chainAnoGam1,339 chainDp2,206 chainDp2,235 chainDp2,260 chainDp2,268 chainDp2,278 chainDp2,287 chainDp2,324 chainDp2,330 chainDroYak1,206 chainDroYak1,235 chainDroYak1,260 chainDroYak1,268 chainDroYak1,278 chainDroYak1,287 chainDroYak1,324 chainDroYak1,330 cytoBand,1 cytoBand,3 cytoBandIdeo,1 cytoBandIdeo,4 cytoBandIdeo,8 netAnoGam1,212 netAnoGam1,227 netAnoGam1,243 netDp2,212 netDp2,227 netDp2,243 netDroYak1,212 netDroYak1,227 netDroYak1,243 chromosome-based chainAnoGam1,237 chainDp2,228 chainDroYak1,228 churchill mzDy1Dp2Ag1_phast,364 mzDy1Dp2Ag1_phast,605 circle rmsk,172 cite flyreg,95 miRNA,237 pscreen,174 clark genomicSuperDups,259 class rmsk,169 classes rmsk,121 clawson mzDy1Dp2Ag1_phast,596 mzDy1Dp2Ag1_phast,642 mzDy1Dp2Ag1_phast,777 click est,406 intronEst,481 mrna,343 mzDy1Dp2Ag1_phast,250 mzDy1Dp2Ag1_phast,272 netAnoGam1,139 netAnoGam1,153 netDp2,139 netDp2,153 netDroYak1,139 netDroYak1,153 refGene,158 refGene,223 refGene,253 twinscan,103 xenoRefGene,110 xenoRefGene,175 xenoRefGene,205 cloned est,427 intronEst,502 closest augustusGene,241 cm flyreg,97 cnrs miRNA,194 coding refGene,251 simpleRepeat,38 xenoRefGene,203 codon genscan,100 genscan,122 mrna,321 refGene,186 refGene,193 refGene,208 twinscan,90 twinscan,107 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 codons genscan,89 genscan,93 refGene,213 refGene,220 twinscan,79 twinscan,83 xenoRefGene,165 xenoRefGene,172 colinear anophelesEcores,56 collection pscreen,186 refGene,29 xenoRefGene,33 color chainAnoGam1,265 chainDp2,256 chainDroYak1,256 est,131 est,316 genscan,86 genscan,96 intronEst,206 intronEst,391 mrna,77 mrna,262 refGene,79 refGene,217 rmsk,177 twinscan,76 twinscan,86 xenoRefGene,58 xenoRefGene,169 colored chainAnoGam1,240 chainDp2,231 chainDroYak1,231 miRNA,57 coloring chainAnoGam1,256 chainDp2,247 chainDroYak1,247 genscan,116 mrna,322 refGene,187 refGene,194 twinscan,108 xenoRefGene,139 xenoRefGene,146 colors refGene,102 refGene,209 xenoRefGene,81 xenoRefGene,161 column mzDy1Dp2Ag1_phast,403 combination est,278 intronEst,353 mrna,224 combinations blatFugu,153 combined rmsk,202 comparative anophelesEcores,15 blatFugu,12 chainAnoGam1,13 chainDp2,13 chainDroYak1,13 mzDy1Dp2Ag1_phast,10 netAnoGam1,13 netDp2,13 netDroYak1,13 compare mrna,331 refGene,203 xenoRefGene,155 comparison anophelesEcores,103 genomicSuperDups,224 genscan,109 twinscan,99 comparisons anophelesEcores,65 anophelesEcores,172 twinscan,33 complete genscan,213 completely refGene,185 xenoRefGene,137 complex chainAnoGam1,134 chainDp2,125 chainDroYak1,125 complexity rmsk,30 rmsk,153 composition mzDy1Dp2Ag1_phast,158 compositional genscan,41 computational genscan,196 twinscan,144 computed anophelesEcores,24 flyreg,67 computes mzDy1Dp2Ag1_phast,324 concerning refGene,61 conditional augustusGene,118 configuration chainAnoGam1,231 chainDp2,222 chainDroYak1,222 est,49 genscan,64 genscan,84 intronEst,127 miRNA,20 mrna,30 mzDy1Dp2Ag1_phast,125 mzDy1Dp2Ag1_phast,275 mzDy1Dp2Ag1_phast,283 netAnoGam1,67 netDp2,67 netDroYak1,67 refGene,67 rmsk,109 twinscan,54 twinscan,74 xenoRefGene,46 configured est,372 intronEst,447 mrna,318 mzDy1Dp2Ag1_phast,258 refGene,110 xenoRefGene,89 connected anophelesEcores,44 conservation mzDy1Dp2Ag1_phast,1 mzDy1Dp2Ag1_phast,20 mzDy1Dp2Ag1_phast,81 mzDy1Dp2Ag1_phast,144 mzDy1Dp2Ag1_phast,317 mzDy1Dp2Ag1_phast,325 mzDy1Dp2Ag1_phast,439 mzDy1Dp2Ag1_phast,522 conservation-scoring mzDy1Dp2Ag1_phast,466 conserved anophelesEcores,13 anophelesEcores,22 anophelesEcores,89 mzDy1Dp2Ag1_phast,381 mzDy1Dp2Ag1_phast,408 mzDy1Dp2Ag1_phast,486 mzDy1Dp2Ag1_phast,653 considerable est,601 intronEst,676 considered intronEst,59 constitute gap,46 constructed blatFugu,35 consult est,220 intronEst,295 mrna,166 contained netAnoGam1,381 netDp2,381 netDroYak1,381 containing genomicSuperDups,95 contains blastHg16KG,17 blatFugu,81 est,245 gap,35 intronEst,320 mrna,191 pscreen,119 refGene,190 xenoRefGene,142 contamination est,589 intronEst,93 intronEst,664 content augustusGene,71 gcPercent,37 gcPercent,47 gcPercent,50 continuous-time mzDy1Dp2Ag1_phast,427 contributing anophelesEcores,134 control refGene,147 controls refGene,113 xenoRefGene,92 conventions chainAnoGam1,229 chainDp2,220 chainDroYak1,220 est,47 est,55 genomicSuperDups,30 genscan,62 genscan,70 intronEst,125 intronEst,133 miRNA,18 mrna,28 mrna,36 netAnoGam1,65 netDp2,65 netDroYak1,65 refGene,65 refGene,73 rmsk,107 twinscan,52 twinscan,60 xenoRefGene,44 xenoRefGene,52 converted chainAnoGam1,309 chainDp2,300 chainDroYak1,300 copies microsat,80 cornell mzDy1Dp2Ag1_phast,588 corrections refGene,56 correspond anophelesEcores,49 corresponding mzDy1Dp2Ag1_phast,401 pscreen,130 corresponds anophelesEcores,38 est,228 intronEst,303 mrna,174 pscreen,57 cosmid blatFugu,65 cover est,522 intronEst,597 coverage blatFugu,58 blatFugu,72 covered netAnoGam1,304 netDp2,304 netDroYak1,304 created miRNA,182 microsat,89 mzDy1Dp2Ag1_phast,548 rmsk,13 creates chainAnoGam1,344 chainDp2,335 chainDroYak1,335 credits anophelesEcores,126 augustusGene,247 bdgpGene,22 bdgpNonCoding,22 blastHg16KG,140 blatFugu,200 chainAnoGam1,400 chainDp2,380 chainDroYak1,380 cytoBand,31 est,689 flyreg,79 gcPercent,57 genomicSuperDups,232 genscan,169 intronEst,764 miRNA,178 microsat,104 mrna,400 mzDy1Dp2Ag1_phast,544 netAnoGam1,405 netDp2,405 netDroYak1,405 pscreen,161 refGene,319 rmsk,284 simpleRepeat,66 twinscan,138 xenoRefGene,271 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 crollius anophelesEcores,185 cruz chainAnoGam1,446 chainDp2,426 chainDroYak1,426 netAnoGam1,420 netDp2,444 netDroYak1,420 culaire miRNA,192 culaires miRNA,215 culex augustusGene,220 curated refGene,335 refGene,370 xenoRefGene,287 curation flyreg,31 current est,163 genomicSuperDups,308 intronEst,238 mrna,109 rmsk,216 currently mzDy1Dp2Ag1_phast,506 pscreen,137 cw anophelesEcores,151 cytogenetic cytoBand,14 cytosine gcPercent,25 d anophelesEcores,3 augustusGene,293 blastHg16KG,75 blastHg16KG,85 blatFugu,186 chainAnoGam1,31 chainAnoGam1,59 chainAnoGam1,127 chainAnoGam1,174 chainAnoGam1,301 chainAnoGam1,337 chainAnoGam1,503 chainAnoGam1,547 chainDp2,1 chainDp2,4 chainDp2,21 chainDp2,31 chainDp2,56 chainDp2,59 chainDp2,110 chainDp2,118 chainDp2,165 chainDp2,290 chainDp2,292 chainDp2,322 chainDp2,328 chainDp2,483 chainDp2,527 chainDroYak1,1 chainDroYak1,4 chainDroYak1,21 chainDroYak1,31 chainDroYak1,56 chainDroYak1,59 chainDroYak1,110 chainDroYak1,118 chainDroYak1,165 chainDroYak1,290 chainDroYak1,292 chainDroYak1,322 chainDroYak1,328 chainDroYak1,483 chainDroYak1,527 cytoBand,12 est,1 est,4 est,18 est,607 flyreg,44 gap,20 genscan,192 intronEst,3 intronEst,19 intronEst,120 intronEst,682 mrna,1 mrna,4 mrna,19 mrna,347 mzDy1Dp2Ag1_phast,49 mzDy1Dp2Ag1_phast,57 mzDy1Dp2Ag1_phast,62 mzDy1Dp2Ag1_phast,92 mzDy1Dp2Ag1_phast,94 mzDy1Dp2Ag1_phast,103 mzDy1Dp2Ag1_phast,177 mzDy1Dp2Ag1_phast,297 mzDy1Dp2Ag1_phast,305 mzDy1Dp2Ag1_phast,676 mzDy1Dp2Ag1_phast,729 mzDy1Dp2Ag1_phast,835 netAnoGam1,23 netAnoGam1,31 netAnoGam1,484 netAnoGam1,528 netDp2,1 netDp2,4 netDp2,21 netDp2,23 netDp2,31 netDp2,47 netDp2,508 netDp2,552 netDroYak1,1 netDroYak1,4 netDroYak1,21 netDroYak1,23 netDroYak1,31 netDroYak1,47 netDroYak1,484 netDroYak1,528 refGene,16 refGene,263 twinscan,6 twinscan,162 xenoRefGene,24 xenoRefGene,215 d.mel mzDy1Dp2Ag1_phast,2 d.pseudo mzDy1Dp2Ag1_phast,4 d.yakuba mzDy1Dp2Ag1_phast,3 d109-11 miRNA,284 d140-4 miRNA,265 d23-6 est,732 intronEst,807 mrna,444 d501-4 refGene,388 da est,712 intronEst,787 mrna,424 dan flyreg,69 flyreg,132 dark genomicSuperDups,40 genomicSuperDups,47 genomicSuperDups,54 refGene,96 xenoRefGene,75 darker intronEst,142 darkly est,69 gcPercent,41 mrna,50 dasilva anophelesEcores,191 data anophelesEcores,136 blatFugu,221 est,699 flyreg,18 flyreg,88 genomicSuperDups,234 intronEst,774 miRNA,235 microsat,47 mrna,411 mzDy1Dp2Ag1_phast,512 netDp2,410 pscreen,172 refGene,32 refGene,329 rmsk,229 rmsk,246 twinscan,155 xenoRefGene,36 xenoRefGene,281 database chainAnoGam1,462 chainDp2,442 chainDroYak1,442 est,730 flyreg,7 flyreg,106 genomicSuperDups,72 intronEst,805 miRNA,263 miRNA,282 mrna,442 netAnoGam1,461 netDp2,485 netDroYak1,461 pscreen,28 refGene,373 refGene,386 rmsk,309 databases est,576 est,706 intronEst,97 intronEst,651 intronEst,781 mrna,418 david chainAnoGam1,456 chainDp2,436 chainDroYak1,436 de augustusGene,303 cytoBand,25 cytoBand,40 miRNA,188 miRNA,205 default chainAnoGam1,233 chainDp2,224 chainDroYak1,224 refGene,151 refGene,235 xenoRefGene,103 xenoRefGene,187 degraded est,491 intronEst,566 degree est,586 intronEst,661 deletion chainAnoGam1,116 chainAnoGam1,508 chainDp2,107 chainDp2,488 chainDroYak1,107 chainDroYak1,488 mzDy1Dp2Ag1_phast,734 netAnoGam1,489 netDp2,513 netDroYak1,489 rmsk,190 deletions chainAnoGam1,75 chainAnoGam1,149 chainDp2,75 chainDp2,140 chainDroYak1,75 chainDroYak1,140 dense est,61 intronEst,139 mrna,42 mzDy1Dp2Ag1_phast,112 density mzDy1Dp2Ag1_phast,118 dependencies genscan,183 depicts gap,10 deposited est,563 intronEst,638 derived blatFugu,73 netAnoGam1,255 netDp2,255 netDroYak1,255 described genscan,161 miRNA,153 miRNA,164 netAnoGam1,262 netDp2,262 netDroYak1,262 rmsk,96 twinscan,126 describes augustusGene,226 mzDy1Dp2Ag1_phast,337 description anophelesEcores,17 augustusGene,12 bdgpGene,11 bdgpNonCoding,11 blastHg16KG,14 blatFugu,14 chainAnoGam1,15 chainDp2,15 chainDroYak1,15 cytoBand,8 est,12 est,112 flyreg,11 gap,7 gcPercent,12 genomicSuperDups,13 genomicSuperDups,202 genscan,10 genscan,77 genscan,133 intronEst,13 intronEst,187 miRNA,9 miRNA,115 microsat,10 mrna,12 mrna,58 mzDy1Dp2Ag1_phast,12 netAnoGam1,15 netAnoGam1,267 netDp2,15 netDp2,267 netDroYak1,15 netDroYak1,267 pscreen,13 refGene,9 refGene,120 rmsk,9 simpleRepeat,11 twinscan,14 twinscan,67 twinscan,113 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designated gap,28 desired est,277 intronEst,352 mrna,223 detail genscan,164 detailed augustusGene,90 blatFugu,183 mzDy1Dp2Ag1_phast,230 netAnoGam1,145 netAnoGam1,164 netDp2,145 netDp2,164 netDroYak1,145 netDroYak1,164 rmsk,37 detect anophelesEcores,87 detected genomicSuperDups,18 genomicSuperDups,159 detection genomicSuperDups,208 determining netAnoGam1,169 netDp2,169 netDroYak1,169 developed chainAnoGam1,403 chainAnoGam1,438 chainDp2,383 chainDp2,418 chainDroYak1,383 chainDroYak1,418 netAnoGam1,413 netAnoGam1,426 netDp2,437 netDp2,450 netDroYak1,413 netDroYak1,426 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 differ est,395 intronEst,470 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 blatFugu,146 genscan,54 miRNA,80 mzDy1Dp2Ag1_phast,266 netAnoGam1,244 netDp2,244 netDroYak1,244 pscreen,128 rmsk,120 direction est,81 est,99 intronEst,156 intronEst,174 pscreen,53 discarded chainAnoGam1,391 chainDp2,371 chainDroYak1,371 refGene,277 xenoRefGene,229 discover blastHg16KG,58 disease genomicSuperDups,126 diseases simpleRepeat,54 display chainAnoGam1,207 chainAnoGam1,228 chainAnoGam1,271 chainAnoGam1,460 chainDp2,198 chainDp2,219 chainDp2,262 chainDp2,440 chainDroYak1,198 chainDroYak1,219 chainDroYak1,262 chainDroYak1,440 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 genomicSuperDups,29 genscan,61 genscan,69 genscan,104 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 miRNA,17 miRNA,87 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 mzDy1Dp2Ag1_phast,74 mzDy1Dp2Ag1_phast,113 mzDy1Dp2Ag1_phast,135 mzDy1Dp2Ag1_phast,146 mzDy1Dp2Ag1_phast,198 mzDy1Dp2Ag1_phast,242 netAnoGam1,64 netAnoGam1,70 netAnoGam1,129 netAnoGam1,158 netAnoGam1,187 netAnoGam1,459 netDp2,64 netDp2,70 netDp2,129 netDp2,158 netDp2,187 netDp2,483 netDroYak1,64 netDroYak1,70 netDroYak1,129 netDroYak1,158 netDroYak1,187 netDroYak1,459 refGene,64 refGene,72 refGene,101 refGene,138 refGene,164 refGene,207 rmsk,106 rmsk,112 rmsk,182 twinscan,51 twinscan,59 twinscan,94 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainAnoGam1,396 chainDp2,376 chainDroYak1,376 est,685 flyreg,61 intronEst,760 miRNA,75 mzDy1Dp2Ag1_phast,222 mzDy1Dp2Ag1_phast,270 netAnoGam1,106 netAnoGam1,203 netDp2,106 netDp2,203 netDroYak1,106 netDroYak1,203 refGene,243 xenoRefGene,195 displays chainAnoGam1,91 chainDp2,82 chainDroYak1,82 genomicSuperDups,132 microsat,13 rmsk,116 simpleRepeat,14 disrupting pscreen,124 disruption pscreen,5 pscreen,33 pscreen,85 pscreen,159 pscreen,167 pscreen,213 dissertation augustusGene,105 distant est,546 intronEst,621 distinguish genomicSuperDups,34 distributions augustusGene,83 genscan,42 diverged netAnoGam1,404 netDp2,404 netDroYak1,404 dj blastHg16KG,165 est,716 intronEst,791 mrna,428 dl est,720 intronEst,795 mrna,432 dm1 mzDy1Dp2Ag1_phast,55 mzDy1Dp2Ag1_phast,56 dna anophelesEcores,221 blatFugu,143 genscan,219 microsat,123 mzDy1Dp2Ag1_phast,342 mzDy1Dp2Ag1_phast,706 rmsk,23 rmsk,31 rmsk,145 rmsk,148 simpleRepeat,83 dnase flyreg,4 flyreg,15 flyreg,38 flyreg,103 doe blatFugu,27 does mzDy1Dp2Ag1_phast,138 mzDy1Dp2Ag1_phast,469 done anophelesEcores,67 augustusGene,265 augustusGene,281 dongen miRNA,243 donor genscan,31 dossat anophelesEcores,140 double chainAnoGam1,99 chainAnoGam1,130 chainDp2,90 chainDp2,121 chainDroYak1,90 chainDroYak1,121 double-lined chainAnoGam1,191 chainDp2,182 chainDroYak1,182 double-sided chainAnoGam1,64 chainDp2,64 chainDroYak1,64 downloads rmsk,76 dp miRNA,323 dp2 chainDp2,10 chainDp2,23 chainDp2,28 mzDy1Dp2Ag1_phast,66 netDp2,10 netDp2,61 netDp2,62 netDp2,409 dr refGene,364 draft blatFugu,203 drastically intronEst,99 drawn gcPercent,39 dreyfuss miRNA,330 drosophila anophelesEcores,79 anophelesEcores,106 anophelesEcores,162 augustusGene,213 flyreg,3 flyreg,102 flyreg,119 mzDy1Dp2Ag1_phast,23 pscreen,139 pscreen,222 droyak1 chainDroYak1,10 chainDroYak1,23 chainDroYak1,28 mzDy1Dp2Ag1_phast,61 netDroYak1,10 netDroYak1,61 netDroYak1,62 duan twinscan,161 due chainAnoGam1,113 chainAnoGam1,184 chainAnoGam1,196 chainDp2,104 chainDp2,175 chainDp2,187 chainDroYak1,104 chainDroYak1,175 chainDroYak1,187 duplication chainAnoGam1,507 chainDp2,487 chainDroYak1,487 genomicSuperDups,71 mzDy1Dp2Ag1_phast,733 netAnoGam1,488 netDp2,512 netDroYak1,488 duplications genomicSuperDups,3 genomicSuperDups,22 genomicSuperDups,61 genomicSuperDups,118 genomicSuperDups,150 genomicSuperDups,277 genomicSuperDups,302 dups genomicSuperDups,2 during netAnoGam1,309 netDp2,309 netDroYak1,309 dynamic chainAnoGam1,357 chainDp2,348 chainDroYak1,348 e.g chainAnoGam1,288 chainDp2,279 chainDroYak1,279 each anophelesEcores,35 blastHg16KG,69 chainAnoGam1,225 chainDp2,216 chainDroYak1,216 est,217 genscan,99 intronEst,292 mrna,163 mzDy1Dp2Ag1_phast,99 mzDy1Dp2Ag1_phast,160 mzDy1Dp2Ag1_phast,345 mzDy1Dp2Ag1_phast,393 twinscan,89 eacute miRNA,191 miRNA,196 miRNA,209 miRNA,211 miRNA,214 eckenberg anophelesEcores,142 ecore anophelesEcores,41 ecores anophelesEcores,2 anophelesEcores,57 anophelesEcores,91 ecotig anophelesEcores,52 ed mzDy1Dp2Ag1_phast,780 eddy miRNA,332 editor mzDy1Dp2Ag1_phast,684 editors genscan,195 ee genomicSuperDups,274 genomicSuperDups,300 effect est,561 intronEst,636 mzDy1Dp2Ag1_phast,517 eichler genomicSuperDups,248 genomicSuperDups,273 genomicSuperDups,299 eiglmeier anophelesEcores,144 either chainAnoGam1,96 chainDp2,87 chainDroYak1,87 electronic rmsk,312 element pscreen,22 pscreen,84 rmsk,198 elements mzDy1Dp2Ag1_phast,654 pscreen,48 rmsk,3 rmsk,127 rmsk,135 rmsk,140 rmsk,147 rmsk,316 eliminate est,634 intronEst,709 eliminating intronEst,105 elnitski mzDy1Dp2Ag1_phast,767 elsevier genscan,202 emerged est,531 intronEst,606 netAnoGam1,315 netDp2,315 netDroYak1,315 end blatFugu,43 est,481 est,499 est,509 est,550 intronEst,556 intronEst,574 intronEst,584 intronEst,625 end-sequences blatFugu,68 ends genomicSuperDups,190 intronEst,86 enright miRNA,247 ensembl anophelesEcores,105 anophelesEcores,123 enter chainAnoGam1,282 chainDp2,273 chainDroYak1,273 miRNA,97 entered est,254 intronEst,329 mrna,200 especially est,155 intronEst,230 mrna,101 est est,11 est,87 est,183 est,412 est,575 est,596 est,648 est,697 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,487 intronEst,650 intronEst,671 intronEst,723 intronEst,772 mrna,11 estimate anophelesEcores,209 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,451 est,496 est,507 est,609 est,636 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,526 intronEst,571 intronEst,582 intronEst,684 intronEst,711 et anophelesEcores,29 anophelesEcores,94 anophelesEcores,158 anophelesEcores,207 flyreg,50 genomicSuperDups,212 genomicSuperDups,229 miRNA,157 miRNA,207 miRNA,338 mzDy1Dp2Ag1_phast,502 mzDy1Dp2Ag1_phast,650 mzDy1Dp2Ag1_phast,781 pscreen,177 pscreen,208 twinscan,130 eucaryote miRNA,193 evan genomicSuperDups,247 evans-holm pscreen,200 even est,570 est,577 intronEst,645 intronEst,652 every netAnoGam1,27 netDp2,27 netDroYak1,27 evidence genomicSuperDups,73 intronEst,65 evol mzDy1Dp2Ag1_phast,622 evolution chainAnoGam1,504 chainDp2,484 chainDroYak1,484 genomicSuperDups,129 mzDy1Dp2Ag1_phast,619 mzDy1Dp2Ag1_phast,689 mzDy1Dp2Ag1_phast,704 mzDy1Dp2Ag1_phast,730 netAnoGam1,485 netDp2,509 netDroYak1,485 evolutionarily anophelesEcores,88 mzDy1Dp2Ag1_phast,652 evolutionary anophelesEcores,12 anophelesEcores,21 mzDy1Dp2Ag1_phast,19 ew blastHg16KG,163 genomicSuperDups,270 example est,186 est,239 genomicSuperDups,226 intronEst,261 intronEst,314 mrna,132 mrna,185 exceed miRNA,92 except twinscan,26 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 exclusion mzDy1Dp2Ag1_phast,129 exist netAnoGam1,90 netDp2,90 netDroYak1,90 exofish anophelesEcores,27 exon augustusGene,86 blastHg16KG,59 blastHg16KG,70 blastHg16KG,104 blastHg16KG,117 exons blastHg16KG,87 genscan,44 expansions simpleRepeat,48 expense intronEst,103 explanation mzDy1Dp2Ag1_phast,280 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 expression flyreg,8 extend rmsk,267 extended blastHg16KG,120 extending blastHg16KG,106 extents miRNA,134 f anophelesEcores,206 chainAnoGam1,477 chainDp2,457 chainDroYak1,457 mzDy1Dp2Ag1_phast,805 facilitate genscan,106 twinscan,96 factor est,231 flyreg,78 flyreg,113 intronEst,306 mrna,177 faq augustusGene,45 genscan,60 rmsk,280 feature chainAnoGam1,211 chainDp2,202 chainDroYak1,202 est,378 genscan,129 intronEst,453 mrna,324 refGene,195 refGene,230 twinscan,120 xenoRefGene,147 xenoRefGene,182 features refGene,104 xenoRefGene,83 feb anophelesEcores,7 chainAnoGam1,6 chainAnoGam1,24 mzDy1Dp2Ag1_phast,710 netAnoGam1,6 netAnoGam1,57 febs miRNA,301 fed chainAnoGam1,321 chainDp2,312 chainDroYak1,312 feedback refGene,42 felsenstein mzDy1Dp2Ag1_phast,362 mzDy1Dp2Ag1_phast,603 fewer mzDy1Dp2Ag1_phast,247 field augustusGene,120 fill netAnoGam1,339 netAnoGam1,372 netDp2,339 netDp2,372 netDroYak1,339 netDroYak1,372 filled netAnoGam1,99 netAnoGam1,118 netAnoGam1,321 netAnoGam1,394 netDp2,99 netDp2,118 netDp2,321 netDp2,394 netDroYak1,99 netDroYak1,118 netDroYak1,321 netDroYak1,394 filter chainAnoGam1,294 chainDp2,285 chainDroYak1,285 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 genscan,82 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 twinscan,72 filtered est,330 intronEst,405 mrna,276 filtering est,269 intronEst,344 mrna,215 finally blastHg16KG,82 find chainAnoGam1,366 chainDp2,357 chainDroYak1,357 finder blatFugu,196 microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netAnoGam1,38 netDp2,38 netDroYak1,38 first blastHg16KG,37 blatFugu,110 netAnoGam1,279 netDp2,279 netDroYak1,279 fischer anophelesEcores,195 fish augustusGene,201 fit netAnoGam1,299 netDp2,299 netDroYak1,299 fixed mzDy1Dp2Ag1_phast,477 fizames anophelesEcores,197 flag rmsk,253 flags rmsk,255 flicek twinscan,159 fly augustusGene,214 flybase bdgpGene,1 bdgpGene,6 bdgpGene,19 bdgpGene,25 bdgpNonCoding,1 bdgpNonCoding,6 bdgpNonCoding,19 bdgpNonCoding,25 cytoBand,28 cytoBand,37 flyreg flyreg,1 flyreg,2 flyreg,20 flyreg,23 flyreg,87 following chainAnoGam1,375 genomicSuperDups,28 genscan,81 miRNA,311 mzDy1Dp2Ag1_phast,41 mzDy1Dp2Ag1_phast,553 twinscan,71 follows est,52 genscan,67 intronEst,130 mrna,33 refGene,70 twinscan,57 xenoRefGene,49 footprint flyreg,6 flyreg,17 flyreg,57 flyreg,105 flyreg,137 footprints flyreg,40 flyreg,75 for anophelesEcores,133 augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 bdgpGene,26 bdgpNonCoding,26 blastHg16KG,150 blatFugu,102 blatFugu,228 chainAnoGam1,224 chainDp2,215 chainDroYak1,215 cytoBand,42 cytoBandIdeo,7 est,56 est,114 est,185 est,216 est,238 est,400 est,444 flyreg,41 flyreg,76 flyreg,84 flyreg,134 genomicSuperDups,78 genomicSuperDups,178 genomicSuperDups,199 genomicSuperDups,225 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,519 miRNA,343 miRNA,356 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 mzDy1Dp2Ag1_phast,278 mzDy1Dp2Ag1_phast,380 mzDy1Dp2Ag1_phast,386 mzDy1Dp2Ag1_phast,438 mzDy1Dp2Ag1_phast,702 netAnoGam1,26 netAnoGam1,37 netAnoGam1,42 netAnoGam1,176 netDp2,26 netDp2,37 netDp2,42 netDp2,176 netDroYak1,26 netDroYak1,37 netDroYak1,42 netDroYak1,176 pscreen,96 pscreen,146 pscreen,169 refGene,43 refGene,59 refGene,74 refGene,225 rmsk,25 rmsk,259 rmsk,281 rmsk,291 simpleRepeat,30 simpleRepeat,56 twinscan,61 twinscan,115 twinscan,152 xenoRefGene,20 xenoRefGene,53 xenoRefGene,177 format chainAnoGam1,312 chainDp2,303 chainDroYak1,303 forth netAnoGam1,125 netDp2,125 netDroYak1,125 forward pscreen,67 found augustusGene,100 miRNA,297 mrna,375 mzDy1Dp2Ag1_phast,499 twinscan,47 four blatFugu,152 netAnoGam1,193 netDp2,193 netDroYak1,193 fr1 blatFugu,8 fragments est,42 intronEst,53 france miRNA,200 miRNA,217 freely blatFugu,223 freeze netDp2,415 freeze1 chainDp2,9 chainDp2,27 netDp2,9 netDp2,60 from augustusGene,19 bdgpGene,5 bdgpNonCoding,5 blastHg16KG,23 blastHg16KG,41 blatFugu,41 blatFugu,74 blatFugu,204 chainAnoGam1,84 chainAnoGam1,146 chainAnoGam1,420 chainAnoGam1,452 chainDp2,137 chainDp2,400 chainDp2,432 chainDroYak1,137 chainDroYak1,400 chainDroYak1,432 est,396 est,416 est,437 est,547 est,565 est,610 est,696 flyreg,19 genomicSuperDups,167 genscan,15 intronEst,471 intronEst,491 intronEst,512 intronEst,622 intronEst,640 intronEst,685 intronEst,771 miRNA,3 miRNA,15 miRNA,67 miRNA,122 mrna,7 mrna,408 mzDy1Dp2Ag1_phast,132 mzDy1Dp2Ag1_phast,142 mzDy1Dp2Ag1_phast,356 netAnoGam1,55 netAnoGam1,245 netAnoGam1,256 netAnoGam1,443 netDp2,55 netDp2,245 netDp2,256 netDp2,413 netDp2,467 netDroYak1,55 netDroYak1,245 netDroYak1,256 netDroYak1,443 pscreen,24 pscreen,184 refGene,23 refGene,215 refGene,326 rmsk,86 xenoRefGene,27 xenoRefGene,167 xenoRefGene,278 fruitfly anophelesEcores,78 flyreg,43 flyreg,118 fugu blatFugu,1 blatFugu,3 blatFugu,16 blatFugu,207 blatFugu,217 fuguization genomicSuperDups,172 genomicSuperDups,206 full chainAnoGam1,206 chainDp2,197 chainDroYak1,197 genomicSuperDups,201 mzDy1Dp2Ag1_phast,73 netAnoGam1,69 netDp2,69 netDroYak1,69 rmsk,111 furthermore augustusGene,64 g gcPercent,21 miRNA,208 miRNA,331 microsat,115 mzDy1Dp2Ag1_phast,633 pscreen,193 pscreen,199 simpleRepeat,75 g-25-100100-90 chainAnoGam1,383 ga mzDy1Dp2Ag1_phast,606 gambiae anophelesEcores,6 anophelesEcores,85 anophelesEcores,166 augustusGene,219 chainAnoGam1,2 chainAnoGam1,5 chainAnoGam1,22 chainAnoGam1,57 chainAnoGam1,81 chainAnoGam1,120 chainAnoGam1,300 chainAnoGam1,332 mzDy1Dp2Ag1_phast,28 mzDy1Dp2Ag1_phast,68 mzDy1Dp2Ag1_phast,98 mzDy1Dp2Ag1_phast,309 netAnoGam1,2 netAnoGam1,5 netAnoGam1,22 netAnoGam1,48 gap blastHg16KG,95 blastHg16KG,99 chainAnoGam1,36 chainAnoGam1,46 chainAnoGam1,158 chainDp2,36 chainDp2,46 chainDp2,149 chainDroYak1,36 chainDroYak1,46 chainDroYak1,149 gap,1 gap,2 gap,31 gap,48 mzDy1Dp2Ag1_phast,203 mzDy1Dp2Ag1_phast,211 netAnoGam1,162 netAnoGam1,174 netAnoGam1,197 netAnoGam1,215 netAnoGam1,230 netAnoGam1,247 netAnoGam1,323 netDp2,162 netDp2,174 netDp2,197 netDp2,215 netDp2,230 netDp2,247 netDp2,323 netDroYak1,162 netDroYak1,174 netDroYak1,197 netDroYak1,215 netDroYak1,230 netDroYak1,247 netDroYak1,323 gapless chainAnoGam1,350 chainDp2,341 chainDroYak1,341 gappy mzDy1Dp2Ag1_phast,525 gaps chainAnoGam1,42 chainAnoGam1,53 chainAnoGam1,66 chainAnoGam1,109 chainAnoGam1,135 chainAnoGam1,181 chainAnoGam1,192 chainDp2,42 chainDp2,53 chainDp2,66 chainDp2,100 chainDp2,126 chainDp2,172 chainDp2,183 chainDroYak1,42 chainDroYak1,53 chainDroYak1,66 chainDroYak1,100 chainDroYak1,126 chainDroYak1,172 chainDroYak1,183 gap,11 mzDy1Dp2Ag1_phast,168 mzDy1Dp2Ag1_phast,174 mzDy1Dp2Ag1_phast,509 mzDy1Dp2Ag1_phast,543 netAnoGam1,89 netAnoGam1,111 netAnoGam1,138 netAnoGam1,378 netAnoGam1,384 netDp2,89 netDp2,111 netDp2,138 netDp2,378 netDp2,384 netDroYak1,89 netDroYak1,111 netDroYak1,138 netDroYak1,378 netDroYak1,384 gary microsat,111 simpleRepeat,71 gc gcPercent,1 gcPercent,4 gcPercent,14 gcPercent,36 gcPercent,46 gcPercent,49 genbank est,25 est,611 est,721 intronEst,26 intronEst,686 intronEst,796 mrna,8 mrna,23 mrna,346 mrna,433 gene anophelesEcores,212 augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 bdgpGene,9 bdgpNonCoding,9 blastHg16KG,12 genomicSuperDups,128 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 miRNA,7 miRNA,254 pscreen,4 pscreen,32 pscreen,158 pscreen,166 pscreen,212 refGene,7 refGene,44 refGene,75 refGene,156 refGene,171 refGene,176 refGene,204 twinscan,3 twinscan,12 twinscan,36 twinscan,62 twinscan,101 twinscan,169 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 gene-rich gcPercent,55 general est,493 intronEst,568 mzDy1Dp2Ag1_phast,455 generally miRNA,141 rmsk,72 generate est,604 intronEst,679 mzDy1Dp2Ag1_phast,46 rmsk,227 rmsk,300 generated chainAnoGam1,468 chainDp2,448 chainDroYak1,448 gcPercent,61 genomicSuperDups,198 mzDy1Dp2Ag1_phast,405 refGene,330 rmsk,248 xenoRefGene,282 generating augustusGene,189 genes augustusGene,8 augustusGene,44 bdgpGene,2 bdgpGene,4 bdgpGene,7 bdgpGene,16 bdgpNonCoding,4 bdgpNonCoding,7 bdgpNonCoding,16 blastHg16KG,10 blastHg16KG,28 blastHg16KG,34 blastHg16KG,45 est,45 genscan,2 genscan,6 genscan,59 intronEst,56 miRNA,5 miRNA,296 pscreen,129 pscreen,140 pscreen,223 refGene,2 refGene,4 refGene,5 refGene,12 refGene,21 refGene,233 refGene,241 refGene,252 simpleRepeat,41 twinscan,10 twinscan,19 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,185 xenoRefGene,193 xenoRefGene,204 genet anophelesEcores,224 rmsk,318 genetic rmsk,88 genetics blatFugu,50 mzDy1Dp2Ag1_phast,708 pscreen,224 genome anophelesEcores,74 anophelesEcores,120 anophelesEcores,167 anophelesEcores,173 augustusGene,31 blastHg16KG,52 blatFugu,19 blatFugu,29 blatFugu,188 blatFugu,215 blatFugu,241 chainAnoGam1,33 chainAnoGam1,176 chainAnoGam1,554 chainDp2,33 chainDp2,167 chainDp2,534 chainDroYak1,33 chainDroYak1,167 chainDroYak1,534 cytoBand,21 est,28 est,616 est,744 flyreg,33 flyreg,109 gap,22 genomicSuperDups,281 genomicSuperDups,310 genomicSuperDups,313 intronEst,29 intronEst,39 intronEst,691 intronEst,819 miRNA,130 miRNA,369 mrna,26 mrna,354 mrna,456 mzDy1Dp2Ag1_phast,105 mzDy1Dp2Ag1_phast,349 mzDy1Dp2Ag1_phast,446 mzDy1Dp2Ag1_phast,662 mzDy1Dp2Ag1_phast,792 mzDy1Dp2Ag1_phast,842 netAnoGam1,33 netAnoGam1,44 netAnoGam1,277 netAnoGam1,535 netDp2,33 netDp2,44 netDp2,277 netDp2,422 netDp2,559 netDroYak1,33 netDroYak1,44 netDroYak1,277 netDroYak1,535 refGene,265 refGene,348 twinscan,32 xenoRefGene,217 xenoRefGene,301 genome-wide anophelesEcores,63 anophelesEcores,170 anophelesEcores,216 genomes chainAnoGam1,303 chainAnoGam1,516 chainDp2,294 chainDp2,496 chainDroYak1,294 chainDroYak1,496 mzDy1Dp2Ag1_phast,661 mzDy1Dp2Ag1_phast,742 netAnoGam1,497 netDp2,521 netDroYak1,497 refGene,375 genomic blatFugu,135 chainAnoGam1,484 chainDp2,464 chainDroYak1,464 est,91 est,398 est,571 est,682 genomicSuperDups,21 genomicSuperDups,125 genomicSuperDups,146 genomicSuperDups,169 genscan,92 genscan,218 intronEst,166 intronEst,473 intronEst,646 intronEst,757 mrna,335 mrna,396 mzDy1Dp2Ag1_phast,785 mzDy1Dp2Ag1_phast,812 netAnoGam1,181 netDp2,181 netDroYak1,181 refGene,212 refGene,315 twinscan,82 twinscan,166 xenoRefGene,164 xenoRefGene,267 genomics anophelesEcores,16 blatFugu,13 blatFugu,53 chainAnoGam1,14 chainDp2,14 chainDroYak1,14 mzDy1Dp2Ag1_phast,11 netAnoGam1,14 netDp2,14 netDroYak1,14 twinscan,145 genoscope anophelesEcores,34 anophelesEcores,132 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 twinscan,25 genuine intronEst,107 ginger genomicSuperDups,238 giri rmsk,92 rmsk,290 gish blastHg16KG,158 give blatFugu,145 global genomicSuperDups,137 genomicSuperDups,195 gm pscreen,207 go genscan,113 golden genomicSuperDups,25 gradient mzDy1Dp2Ag1_phast,119 graph mzDy1Dp2Ag1_phast,274 graphical netAnoGam1,128 netDp2,128 netDroYak1,128 refGene,137 rmsk,181 gray genomicSuperDups,41 grayscale mzDy1Dp2Ag1_phast,117 greater genomicSuperDups,56 genomicSuperDups,63 green mzDy1Dp2Ag1_phast,779 grey cytoBand,26 cytoBand,41 miRNA,58 griffiths-jones miRNA,155 miRNA,166 miRNA,220 miRNA,238 miRNA,270 miRNA,334 grocock miRNA,240 group augustusGene,198 augustusGene,235 chainAnoGam1,342 chainDp2,333 chainDroYak1,333 mzDy1Dp2Ag1_phast,571 twinscan,146 groups augustusGene,194 gt genomicSuperDups,151 genomicSuperDups,155 intronEst,84 gu genomicSuperDups,257 guanine gcPercent,22 guidelines miRNA,314 h anophelesEcores,186 mzDy1Dp2Ag1_phast,643 mzDy1Dp2Ag1_phast,778 had genomicSuperDups,103 hairpin miRNA,149 handling mzDy1Dp2Ag1_phast,540 hardison chainAnoGam1,422 chainAnoGam1,544 chainDp2,402 chainDp2,524 chainDroYak1,402 chainDroYak1,524 mzDy1Dp2Ag1_phast,832 netAnoGam1,445 netAnoGam1,525 netDp2,469 netDp2,549 netDroYak1,445 netDroYak1,525 has est,117 genomicSuperDups,217 intronEst,83 intronEst,192 mrna,63 mzDy1Dp2Ag1_phast,515 pscreen,81 refGene,89 rmsk,212 xenoRefGene,68 haussler augustusGene,292 chainAnoGam1,457 chainAnoGam1,502 chainAnoGam1,546 chainDp2,437 chainDp2,482 chainDp2,526 chainDroYak1,437 chainDroYak1,482 chainDroYak1,526 mzDy1Dp2Ag1_phast,370 mzDy1Dp2Ag1_phast,675 mzDy1Dp2Ag1_phast,728 mzDy1Dp2Ag1_phast,834 netAnoGam1,483 netAnoGam1,527 netDp2,507 netDp2,551 netDroYak1,483 netDroYak1,527 have intronEst,7 pscreen,49 rmsk,69 having est,655 est,664 intronEst,730 intronEst,739 mrna,369 mrna,378 refGene,288 refGene,297 xenoRefGene,240 xenoRefGene,249 he pscreen,194 help mzDy1Dp2Ag1_phast,276 refGene,60 twinscan,105 helpful est,145 intronEst,220 mrna,91 here est,407 intronEst,482 mrna,344 refGene,224 xenoRefGene,176 hf genomicSuperDups,296 hg16 blastHg16KG,5 blastHg16KG,32 hidden augustusGene,324 mzDy1Dp2Ag1_phast,33 mzDy1Dp2Ag1_phast,608 mzDy1Dp2Ag1_phast,678 hide refGene,231 xenoRefGene,183 hierarchy netAnoGam1,314 netDp2,314 netDroYak1,314 hiesinger pscreen,202 high gcPercent,35 gcPercent,48 mzDy1Dp2Ag1_phast,491 mzDy1Dp2Ag1_phast,521 high-copy genomicSuperDups,162 higher netAnoGam1,346 netDp2,346 netDroYak1,346 rmsk,200 higher-level netAnoGam1,363 netDp2,363 netDroYak1,363 higher-scoring netAnoGam1,307 netAnoGam1,326 netDp2,307 netDp2,326 netDroYak1,307 netDroYak1,326 highest est,657 intronEst,732 mrna,371 refGene,290 xenoRefGene,242 highest-scoring netAnoGam1,80 netAnoGam1,273 netDp2,80 netDp2,273 netDroYak1,80 netDroYak1,273 highlight est,325 intronEst,400 mrna,271 mzDy1Dp2Ag1_phast,265 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 highly microsat,40 highly-conserved mzDy1Dp2Ag1_phast,481 hillier mzDy1Dp2Ag1_phast,646 hinrichs chainAnoGam1,498 chainDp2,478 chainDroYak1,478 mzDy1Dp2Ag1_phast,636 mzDy1Dp2Ag1_phast,724 netAnoGam1,479 netDp2,503 netDroYak1,479 hiram mzDy1Dp2Ag1_phast,595 his chainAnoGam1,431 chainDp2,411 chainDroYak1,411 netAnoGam1,454 netDp2,478 netDroYak1,454 hj pscreen,189 homepage pscreen,145 homology miRNA,299 twinscan,9 twinscan,167 honeybee1 augustusGene,217 hou chainAnoGam1,410 chainDp2,390 chainDroYak1,390 mzDy1Dp2Ag1_phast,560 mzDy1Dp2Ag1_phast,638 netAnoGam1,433 netDp2,457 netDroYak1,433 how netAnoGam1,374 netAnoGam1,391 netDp2,374 netDp2,391 netDroYak1,374 netDroYak1,391 however mzDy1Dp2Ag1_phast,136 http twinscan,49 human anophelesEcores,211 augustusGene,205 augustusGene,210 augustusGene,276 blastHg16KG,1 blastHg16KG,3 blastHg16KG,43 blastHg16KG,51 chainAnoGam1,515 chainDp2,495 chainDroYak1,495 genomicSuperDups,280 genomicSuperDups,309 genscan,217 miRNA,292 mzDy1Dp2Ag1_phast,741 netAnoGam1,496 netDp2,421 netDp2,520 netDroYak1,496 human-mouse chainAnoGam1,550 chainDp2,530 chainDroYak1,530 mzDy1Dp2Ag1_phast,838 netAnoGam1,531 netDp2,555 netDroYak1,531 hybridizes est,461 intronEst,536 i est,714 flyreg,5 flyreg,16 flyreg,39 flyreg,104 intronEst,789 mrna,426 twinscan,129 twinscan,158 i.e intronEst,72 mzDy1Dp2Ag1_phast,447 iagec anophelesEcores,9 chainAnoGam1,8 chainAnoGam1,26 netAnoGam1,8 netAnoGam1,59 identified blastHg16KG,29 chainAnoGam1,426 chainDp2,406 chainDroYak1,406 est,661 intronEst,736 netAnoGam1,449 netDp2,473 netDroYak1,449 refGene,294 xenoRefGene,246 identifying genomicSuperDups,161 identity est,659 est,667 est,679 genomicSuperDups,109 genomicSuperDups,144 genomicSuperDups,157 intronEst,734 intronEst,742 intronEst,754 microsat,71 mrna,373 mrna,381 mrna,393 refGene,292 refGene,300 refGene,312 xenoRefGene,244 xenoRefGene,252 xenoRefGene,264 ideogram cytoBandIdeo,9 if est,268 est,280 est,296 est,332 est,349 flyreg,89 gap,32 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 mzDy1Dp2Ag1_phast,191 mzDy1Dp2Ag1_phast,206 mzDy1Dp2Ag1_phast,209 refGene,244 xenoRefGene,196 ii215-25 augustusGene,338 impact genomicSuperDups,305 imperfect simpleRepeat,19 important genomicSuperDups,121 improve augustusGene,302 twinscan,35 improving mzDy1Dp2Ag1_phast,538 in anophelesEcores,58 anophelesEcores,101 augustusGene,101 blastHg16KG,30 blatFugu,55 blatFugu,106 blatFugu,171 blatFugu,212 blatFugu,230 chainAnoGam1,54 chainAnoGam1,76 chainAnoGam1,117 chainAnoGam1,125 chainAnoGam1,140 chainAnoGam1,159 chainAnoGam1,162 chainAnoGam1,202 chainAnoGam1,219 chainAnoGam1,248 chainAnoGam1,278 chainAnoGam1,290 chainAnoGam1,397 chainAnoGam1,511 chainDp2,54 chainDp2,76 chainDp2,108 chainDp2,116 chainDp2,131 chainDp2,150 chainDp2,153 chainDp2,193 chainDp2,210 chainDp2,239 chainDp2,269 chainDp2,281 chainDp2,377 chainDp2,491 chainDroYak1,54 chainDroYak1,76 chainDroYak1,108 chainDroYak1,116 chainDroYak1,131 chainDroYak1,150 chainDroYak1,153 chainDroYak1,193 chainDroYak1,210 chainDroYak1,239 chainDroYak1,269 chainDroYak1,281 chainDroYak1,377 chainDroYak1,491 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,492 est,540 est,650 est,686 flyreg,47 flyreg,91 flyreg,116 gap,18 gcPercent,5 gcPercent,27 genomicSuperDups,84 genomicSuperDups,123 genomicSuperDups,145 genomicSuperDups,278 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,567 intronEst,615 intronEst,725 intronEst,761 miRNA,43 miRNA,49 miRNA,52 miRNA,105 miRNA,154 miRNA,165 miRNA,173 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,364 mzDy1Dp2Ag1_phast,21 mzDy1Dp2Ag1_phast,72 mzDy1Dp2Ag1_phast,111 mzDy1Dp2Ag1_phast,122 mzDy1Dp2Ag1_phast,175 mzDy1Dp2Ag1_phast,196 mzDy1Dp2Ag1_phast,240 mzDy1Dp2Ag1_phast,259 mzDy1Dp2Ag1_phast,304 mzDy1Dp2Ag1_phast,347 mzDy1Dp2Ag1_phast,424 mzDy1Dp2Ag1_phast,500 mzDy1Dp2Ag1_phast,524 mzDy1Dp2Ag1_phast,616 mzDy1Dp2Ag1_phast,655 mzDy1Dp2Ag1_phast,681 mzDy1Dp2Ag1_phast,687 mzDy1Dp2Ag1_phast,737 netAnoGam1,51 netAnoGam1,68 netAnoGam1,86 netAnoGam1,91 netAnoGam1,100 netAnoGam1,112 netAnoGam1,126 netAnoGam1,168 netAnoGam1,185 netAnoGam1,216 netAnoGam1,234 netAnoGam1,248 netAnoGam1,275 netAnoGam1,316 netAnoGam1,324 netAnoGam1,340 netAnoGam1,373 netAnoGam1,385 netAnoGam1,492 netDp2,51 netDp2,68 netDp2,86 netDp2,91 netDp2,100 netDp2,112 netDp2,126 netDp2,168 netDp2,185 netDp2,216 netDp2,234 netDp2,248 netDp2,275 netDp2,316 netDp2,324 netDp2,340 netDp2,373 netDp2,385 netDp2,516 netDroYak1,51 netDroYak1,68 netDroYak1,86 netDroYak1,91 netDroYak1,100 netDroYak1,112 netDroYak1,126 netDroYak1,168 netDroYak1,185 netDroYak1,216 netDroYak1,234 netDroYak1,248 netDroYak1,275 netDroYak1,316 netDroYak1,324 netDroYak1,340 netDroYak1,373 netDroYak1,385 netDroYak1,492 pscreen,41 refGene,283 rmsk,45 rmsk,63 rmsk,97 rmsk,101 rmsk,110 rmsk,179 rmsk,276 twinscan,20 twinscan,91 twinscan,127 twinscan,133 xenoRefGene,235 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 rmsk,130 rmsk,143 included augustusGene,160 blastHg16KG,116 blastHg16KG,139 genomicSuperDups,83 includes rmsk,168 including est,7 intronEst,116 mzDy1Dp2Ag1_phast,418 rmsk,159 indels microsat,74 indicate chainAnoGam1,108 chainAnoGam1,213 chainDp2,99 chainDp2,204 chainDroYak1,99 chainDroYak1,204 est,71 mrna,52 mzDy1Dp2Ag1_phast,170 pscreen,37 pscreen,66 indicated miRNA,38 indicates blatFugu,112 blatFugu,128 est,79 intronEst,144 intronEst,154 pscreen,77 refGene,81 xenoRefGene,60 individual chainAnoGam1,210 chainDp2,201 chainDroYak1,201 netAnoGam1,183 netDp2,183 netDroYak1,183 information augustusGene,36 blastHg16KG,152 blatFugu,101 cytoBand,45 est,78 est,402 genscan,51 genscan,126 intronEst,153 intronEst,477 miRNA,358 microsat,97 mrna,339 mzDy1Dp2Ag1_phast,231 mzDy1Dp2Ag1_phast,271 mzDy1Dp2Ag1_phast,494 netAnoGam1,146 netAnoGam1,159 netAnoGam1,165 netAnoGam1,341 netDp2,146 netDp2,159 netDp2,165 netDp2,341 netDroYak1,146 netDroYak1,159 netDroYak1,165 netDroYak1,341 refGene,227 rmsk,89 rmsk,283 simpleRepeat,58 twinscan,40 twinscan,117 xenoRefGene,179 initiate rmsk,275 initio augustusGene,4 augustusGene,17 insect mzDy1Dp2Ag1_phast,657 insert blatFugu,77 inserted netAnoGam1,397 netDp2,397 netDroYak1,397 pscreen,51 insertion chainAnoGam1,124 chainDp2,115 chainDroYak1,115 pscreen,8 pscreen,63 rmsk,193 insertions pscreen,2 pscreen,23 pscreen,217 instead refGene,168 xenoRefGene,120 institute blatFugu,30 miRNA,226 rmsk,91 integrating twinscan,165 intergenic genscan,47 international est,703 intronEst,778 mrna,415 internet rmsk,245 interspersed rmsk,26 rmsk,125 rmsk,133 into chainAnoGam1,310 chainAnoGam1,322 chainAnoGam1,340 chainDp2,301 chainDp2,313 chainDp2,331 chainDroYak1,301 chainDroYak1,313 chainDroYak1,331 est,255 est,421 est,428 est,573 genomicSuperDups,185 intronEst,330 intronEst,496 intronEst,503 intronEst,648 mrna,201 netAnoGam1,300 netDp2,300 netDroYak1,300 twinscan,168 intron augustusGene,88 augustusGene,330 est,623 intronEst,71 intronEst,698 introns est,640 genscan,45 intronEst,715 inv netAnoGam1,221 netDp2,221 netDroYak1,221 inversions chainAnoGam1,72 chainAnoGam1,147 chainDp2,72 chainDp2,138 chainDroYak1,72 chainDroYak1,138 inverted netAnoGam1,359 netDp2,359 netDroYak1,359 involve chainAnoGam1,137 chainDp2,128 chainDroYak1,128 is blastHg16KG,142 blatFugu,105 blatFugu,154 blatFugu,160 chainAnoGam1,83 est,284 est,300 est,336 est,353 est,414 est,426 est,435 est,455 est,584 est,628 flyreg,59 gap,27 gcPercent,51 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,489 intronEst,501 intronEst,510 intronEst,530 intronEst,659 intronEst,703 miRNA,74 miRNA,152 miRNA,163 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 mzDy1Dp2Ag1_phast,193 mzDy1Dp2Ag1_phast,204 mzDy1Dp2Ag1_phast,213 mzDy1Dp2Ag1_phast,221 mzDy1Dp2Ag1_phast,226 mzDy1Dp2Ag1_phast,395 netAnoGam1,35 netAnoGam1,54 netAnoGam1,166 netDp2,35 netDp2,54 netDp2,166 netDroYak1,35 netDroYak1,54 netDroYak1,166 pscreen,94 pscreen,101 refGene,124 rmsk,95 simpleRepeat,28 twinscan,125 isolated est,415 intronEst,490 issue est,731 intronEst,806 miRNA,264 miRNA,283 mrna,443 refGene,387 it chainAnoGam1,49 chainDp2,49 chainDroYak1,49 est,93 est,107 est,477 genscan,143 intronEst,168 intronEst,182 intronEst,552 miRNA,73 netAnoGam1,34 netAnoGam1,220 netAnoGam1,232 netDp2,34 netDp2,220 netDp2,232 netDroYak1,34 netDroYak1,220 netDroYak1,232 item pscreen,75 refGene,98 xenoRefGene,77 items est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 miRNA,90 mrna,46 mrna,84 mrna,94 mrna,277 netAnoGam1,184 netDp2,184 netDroYak1,184 refGene,152 xenoRefGene,104 its miRNA,68 j anophelesEcores,157 blastHg16KG,171 est,718 genscan,220 intronEst,793 miRNA,302 mrna,430 mzDy1Dp2Ag1_phast,604 mzDy1Dp2Ag1_phast,645 rmsk,99 rmsk,305 ja genomicSuperDups,256 genomicSuperDups,292 jaillon anophelesEcores,93 anophelesEcores,130 anophelesEcores,138 anophelesEcores,187 jan anophelesEcores,108 chainAnoGam1,557 chainDp2,537 chainDroYak1,537 est,727 intronEst,802 miRNA,260 miRNA,279 miRNA,304 microsat,129 mrna,439 mzDy1Dp2Ag1_phast,51 mzDy1Dp2Ag1_phast,624 mzDy1Dp2Ag1_phast,845 netAnoGam1,538 netDp2,562 netDroYak1,538 refGene,383 simpleRepeat,89 jazz blatFugu,40 jc miRNA,327 jgi blatFugu,6 blatFugu,31 blatFugu,38 blatFugu,48 blatFugu,206 blatFugu,227 jim blastHg16KG,184 blastHg16KG,197 chainAnoGam1,448 chainAnoGam1,473 chainDp2,428 chainDp2,453 chainDroYak1,428 chainDroYak1,453 mzDy1Dp2Ag1_phast,579 netAnoGam1,422 netAnoGam1,472 netDp2,446 netDp2,496 netDroYak1,422 netDroYak1,472 jm anophelesEcores,149 joined chainAnoGam1,93 chainDp2,84 chainDroYak1,84 joint blatFugu,28 journal rmsk,313 js mzDy1Dp2Ag1_phast,635 jul anophelesEcores,176 july cytoBand,29 jun anophelesEcores,226 genomicSuperDups,316 pscreen,226 jurka rmsk,98 rmsk,304 jw flyreg,99 pscreen,197 k anophelesEcores,145 augustusGene,268 genomicSuperDups,262 mzDy1Dp2Ag1_phast,641 mzDy1Dp2Ag1_phast,776 karlin genscan,148 genscan,209 karsch-mizrachi est,713 intronEst,788 mrna,425 kasif genscan,193 kb blatFugu,76 genomicSuperDups,90 genomicSuperDups,153 kd refGene,360 kd-tree chainAnoGam1,346 chainDp2,337 chainDroYak1,337 kd-trees chainAnoGam1,364 chainDp2,355 chainDroYak1,355 kent blastHg16KG,185 blastHg16KG,198 blatFugu,235 chainAnoGam1,449 chainAnoGam1,474 chainAnoGam1,494 chainAnoGam1,536 chainDp2,429 chainDp2,454 chainDp2,474 chainDp2,516 chainDroYak1,429 chainDroYak1,454 chainDroYak1,474 chainDroYak1,516 est,737 intronEst,812 miRNA,362 mrna,449 mzDy1Dp2Ag1_phast,580 mzDy1Dp2Ag1_phast,720 mzDy1Dp2Ag1_phast,763 mzDy1Dp2Ag1_phast,824 netAnoGam1,423 netAnoGam1,473 netAnoGam1,475 netAnoGam1,517 netDp2,447 netDp2,497 netDp2,499 netDp2,541 netDroYak1,423 netDroYak1,473 netDroYak1,475 netDroYak1,517 refGene,342 xenoRefGene,294 kept mrna,399 refGene,318 xenoRefGene,270 kl pscreen,205 km mzDy1Dp2Ag1_phast,772 known blastHg16KG,27 blastHg16KG,33 blastHg16KG,44 genomicSuperDups,219 miRNA,142 refGene,15 xenoRefGene,15 korf twinscan,128 twinscan,157 l anophelesEcores,194 mzDy1Dp2Ag1_phast,768 lab augustusGene,252 label genscan,98 refGene,149 refGene,161 refGene,184 twinscan,88 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled refGene,154 xenoRefGene,106 labeling est,376 intronEst,451 labels refGene,99 xenoRefGene,78 laboratoire miRNA,187 miRNA,204 lack genomicSuperDups,68 large genomicSuperDups,148 largely chainAnoGam1,112 chainDp2,103 chainDroYak1,103 larger intronEst,146 largest blatFugu,91 netAnoGam1,79 netDp2,79 netDroYak1,79 lavtoaxt chainAnoGam1,315 chainDp2,306 chainDroYak1,306 least blastHg16KG,129 est,676 genomicSuperDups,88 genomicSuperDups,97 genomicSuperDups,112 intronEst,68 intronEst,77 intronEst,751 microsat,29 microsat,78 mrna,390 pscreen,126 refGene,309 xenoRefGene,261 left refGene,132 left-pointing pscreen,69 length augustusGene,82 est,38 est,624 genscan,39 intronEst,49 intronEst,81 intronEst,699 lengths mzDy1Dp2Ag1_phast,172 mzDy1Dp2Ag1_phast,420 less refGene,273 xenoRefGene,225 level anophelesEcores,71 est,668 intronEst,91 intronEst,743 mrna,382 mzDy1Dp2Ag1_phast,152 netAnoGam1,74 netAnoGam1,108 netAnoGam1,113 netAnoGam1,120 netAnoGam1,178 netAnoGam1,205 netAnoGam1,218 netAnoGam1,250 netDp2,74 netDp2,108 netDp2,113 netDp2,120 netDp2,178 netDp2,205 netDp2,218 netDp2,250 netDroYak1,74 netDroYak1,108 netDroYak1,113 netDroYak1,120 netDroYak1,178 netDroYak1,205 netDroYak1,218 netDroYak1,250 refGene,83 refGene,301 rmsk,175 xenoRefGene,62 xenoRefGene,253 levels genomicSuperDups,35 mzDy1Dp2Ag1_phast,440 levis pscreen,190 li genomicSuperDups,271 liao pscreen,192 libraries est,521 intronEst,596 rmsk,224 rmsk,297 library pscreen,118 rmsk,83 light genomicSuperDups,38 genomicSuperDups,45 genomicSuperDups,52 refGene,92 xenoRefGene,71 lighter rmsk,207 like cytoBand,34 likely augustusGene,111 genomicSuperDups,75 microsat,17 line anophelesEcores,48 mzDy1Dp2Ag1_phast,169 netAnoGam1,156 netDp2,156 netDroYak1,156 rmsk,136 line-up netAnoGam1,223 netDp2,223 netDroYak1,223 line-ups netAnoGam1,208 netDp2,208 netDroYak1,208 lineage-specific chainAnoGam1,423 chainDp2,403 chainDroYak1,403 netAnoGam1,446 netDp2,470 netDroYak1,446 lines chainAnoGam1,100 chainAnoGam1,107 chainAnoGam1,131 chainDp2,91 chainDp2,98 chainDp2,122 chainDroYak1,91 chainDroYak1,98 chainDroYak1,122 netAnoGam1,136 netDp2,136 netDroYak1,136 link mzDy1Dp2Ag1_phast,277 pscreen,100 refGene,142 twinscan,109 lipman blastHg16KG,164 est,715 intronEst,790 mrna,427 list est,212 intronEst,287 mrna,158 pscreen,153 local blastHg16KG,167 chainAnoGam1,71 chainAnoGam1,153 chainDp2,71 chainDp2,144 chainDroYak1,71 chainDroYak1,144 located simpleRepeat,21 location chainAnoGam1,218 chainDp2,209 chainDroYak1,209 pscreen,88 locations cytoBand,15 gap,3 pscreen,9 pscreen,18 logic est,279 intronEst,354 mrna,225 long est,639 intronEst,714 mzDy1Dp2Ag1_phast,484 rmsk,132 rmsk,137 long-range genomicSuperDups,141 longer chainAnoGam1,41 chainDp2,41 chainDroYak1,41 longest mzDy1Dp2Ag1_phast,187 netAnoGam1,201 netDp2,201 netDroYak1,201 looking mzDy1Dp2Ag1_phast,532 louie genomicSuperDups,245 louis twinscan,151 low gcPercent,45 rmsk,29 rmsk,152 low-res cytoBandIdeo,3 low-resolution cytoBandIdeo,6 lower netAnoGam1,177 netDp2,177 netDroYak1,177 lower-level netAnoGam1,348 netAnoGam1,354 netDp2,348 netDp2,354 netDroYak1,348 netDroYak1,354 ltr rmsk,141 lw mzDy1Dp2Ag1_phast,647 m augustusGene,287 augustusGene,289 augustusGene,317 miRNA,337 mzDy1Dp2Ag1_phast,639 mzDy1Dp2Ag1_phast,762 pscreen,201 m.j miRNA,171 made blatFugu,168 netAnoGam1,467 netDp2,491 netDroYak1,467 maglott refGene,363 make blastHg16KG,67 est,410 est,476 intronEst,485 intronEst,551 refGene,51 making miRNA,231 manner twinscan,22 many est,147 intronEst,106 intronEst,222 mrna,93 mzDy1Dp2Ag1_phast,465 netAnoGam1,87 netDp2,87 netDroYak1,87 map chainAnoGam1,246 chainDp2,237 chainDroYak1,237 mapped augustusGene,298 blastHg16KG,6 cytoBand,16 mapping cytoBand,5 cytoBandIdeo,10 gap,4 gcPercent,9 pscreen,10 mar augustusGene,309 miRNA,348 mario augustusGene,102 augustusGene,283 mark est,497 intronEst,572 markers microsat,23 markov augustusGene,325 mzDy1Dp2Ag1_phast,34 mzDy1Dp2Ag1_phast,428 mzDy1Dp2Ag1_phast,609 mzDy1Dp2Ag1_phast,679 marshall miRNA,336 masked blatFugu,190 rmsk,71 massa genomicSuperDups,295 match blatFugu,124 chainAnoGam1,223 chainDp2,214 chainDroYak1,214 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netAnoGam1,202 netAnoGam1,240 netDp2,202 netDp2,240 netDroYak1,202 netDroYak1,240 matched blastHg16KG,127 matches blatFugu,179 est,72 mrna,53 matching blatFugu,133 chainAnoGam1,226 chainDp2,217 chainDroYak1,217 est,90 intronEst,165 materials pscreen,147 matrices flyreg,139 matrix chainAnoGam1,376 flyreg,66 mature est,467 intronEst,542 miRNA,21 miRNA,65 miRNA,84 miRNA,118 maximally chainAnoGam1,368 chainDp2,359 chainDroYak1,359 maximum blastHg16KG,94 est,622 intronEst,697 maxtracks augustusGene,139 may chainAnoGam1,144 chainDp2,135 chainDroYak1,135 est,143 est,261 est,369 est,472 est,474 est,486 est,488 est,508 est,633 intronEst,218 intronEst,336 intronEst,444 intronEst,547 intronEst,549 intronEst,561 intronEst,563 intronEst,583 intronEst,708 mrna,89 mrna,207 mrna,315 mzDy1Dp2Ag1_phast,256 netAnoGam1,116 netDp2,116 netDroYak1,116 rmsk,234 rmsk,256 rmsk,266 simpleRepeat,43 mblab.wustl.edu twinscan,50 md genomicSuperDups,268 mdash est,446 est,450 gap,12 gap,17 intronEst,521 intronEst,525 measure mzDy1Dp2Ag1_phast,17 medicine netDp2,429 medium refGene,94 xenoRefGene,73 melanogaster anophelesEcores,4 anophelesEcores,80 anophelesEcores,163 blastHg16KG,76 blastHg16KG,86 blatFugu,187 chainAnoGam1,32 chainAnoGam1,60 chainAnoGam1,128 chainAnoGam1,175 chainAnoGam1,302 chainAnoGam1,338 chainDp2,32 chainDp2,60 chainDp2,119 chainDp2,166 chainDp2,293 chainDp2,329 chainDroYak1,32 chainDroYak1,60 chainDroYak1,119 chainDroYak1,166 chainDroYak1,293 chainDroYak1,329 cytoBand,13 est,2 est,5 est,19 est,608 flyreg,45 flyreg,120 gap,21 intronEst,4 intronEst,20 intronEst,121 intronEst,683 mrna,2 mrna,5 mrna,20 mrna,348 mzDy1Dp2Ag1_phast,50 mzDy1Dp2Ag1_phast,104 mzDy1Dp2Ag1_phast,178 mzDy1Dp2Ag1_phast,189 netAnoGam1,24 netAnoGam1,32 netDp2,24 netDp2,32 netDroYak1,24 netDroYak1,32 refGene,17 refGene,264 twinscan,7 xenoRefGene,4 xenoRefGene,25 xenoRefGene,216 melanogaster-d mzDy1Dp2Ag1_phast,298 mellifera augustusGene,216 meme flyreg,65 menu refGene,148 refGene,222 xenoRefGene,174 method genomicSuperDups,209 genomicSuperDups,216 methods anophelesEcores,62 augustusGene,46 blastHg16KG,36 blatFugu,164 chainAnoGam1,297 chainDp2,288 chainDroYak1,288 est,408 genomicSuperDups,116 genscan,130 genscan,197 intronEst,483 miRNA,117 microsat,45 mrna,345 mzDy1Dp2Ag1_phast,285 mzDy1Dp2Ag1_phast,686 netAnoGam1,252 netAnoGam1,261 netDp2,252 netDp2,261 netDroYak1,252 netDroYak1,261 pscreen,141 pscreen,149 refGene,256 rmsk,210 simpleRepeat,55 twinscan,121 xenoRefGene,208 michael twinscan,141 michel miRNA,184 micro-satellites rmsk,151 microbiologie miRNA,206 microrna miRNA,250 miRNA,273 miRNA,295 miRNA,344 micrornas miRNA,2 miRNA,14 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,642 intronEst,183 intronEst,717 miller blastHg16KG,160 chainAnoGam1,417 chainAnoGam1,454 chainAnoGam1,480 chainAnoGam1,500 chainAnoGam1,548 chainDp2,397 chainDp2,434 chainDp2,460 chainDp2,480 chainDp2,528 chainDroYak1,397 chainDroYak1,434 chainDroYak1,460 chainDroYak1,480 chainDroYak1,528 mzDy1Dp2Ag1_phast,565 mzDy1Dp2Ag1_phast,726 mzDy1Dp2Ag1_phast,808 mzDy1Dp2Ag1_phast,836 netAnoGam1,440 netAnoGam1,481 netAnoGam1,529 netDp2,464 netDp2,505 netDp2,553 netDroYak1,440 netDroYak1,481 netDroYak1,529 million blatFugu,87 blatFugu,96 minexonintronprob augustusGene,135 minimum gap,41 miRNA,99 minmeanexonintronprob augustusGene,137 minmei chainAnoGam1,409 chainDp2,389 chainDroYak1,389 mzDy1Dp2Ag1_phast,559 netAnoGam1,432 netDp2,456 netDroYak1,432 mir miRNA,85 mirbase miRNA,4 miRNA,16 miRNA,151 miRNA,249 mirna miRNA,1 miRNA,11 miRNA,124 miRNA,161 miRNA,316 mirnas miRNA,22 miRNA,42 miRNA,121 mirs miRNA,23 miRNA,66 mismatch rmsk,188 missed genomicSuperDups,76 missing mzDy1Dp2Ag1_phast,511 mj miRNA,290 mode blatFugu,174 est,63 est,128 intronEst,141 intronEst,203 mrna,44 mrna,74 mzDy1Dp2Ag1_phast,75 mzDy1Dp2Ag1_phast,114 netAnoGam1,71 netDp2,71 netDroYak1,71 rmsk,113 model augustusGene,121 augustusGene,326 genscan,140 mzDy1Dp2Ag1_phast,35 mzDy1Dp2Ag1_phast,335 mzDy1Dp2Ag1_phast,429 mzDy1Dp2Ag1_phast,459 mzDy1Dp2Ag1_phast,610 mzDy1Dp2Ag1_phast,701 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 mzDy1Dp2Ag1_phast,680 moderately mzDy1Dp2Ag1_phast,485 modes chainAnoGam1,208 chainDp2,199 chainDroYak1,199 modified rmsk,57 mol blastHg16KG,172 genscan,221 miRNA,190 miRNA,213 mzDy1Dp2Ag1_phast,620 molecular genscan,199 mzDy1Dp2Ag1_phast,688 more augustusGene,35 blastHg16KG,108 blastHg16KG,151 chainAnoGam1,133 chainAnoGam1,194 chainDp2,124 chainDp2,185 chainDroYak1,124 chainDroYak1,185 est,68 est,175 est,271 est,401 gcPercent,40 genscan,50 genscan,125 genscan,163 intronEst,250 intronEst,346 intronEst,476 miRNA,357 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 mzDy1Dp2Ag1_phast,493 pscreen,120 refGene,226 rmsk,282 simpleRepeat,57 twinscan,39 twinscan,116 xenoRefGene,178 mosquito anophelesEcores,83 mzDy1Dp2Ag1_phast,26 most augustusGene,93 augustusGene,110 est,445 genomicSuperDups,74 intronEst,520 rmsk,215 motif flyreg,58 flyreg,138 mouse chainAnoGam1,513 chainDp2,493 chainDroYak1,493 miRNA,294 mzDy1Dp2Ag1_phast,739 netAnoGam1,494 netDp2,518 netDroYak1,494 moz2 anophelesEcores,10 chainAnoGam1,9 chainAnoGam1,27 chainAnoGam1,86 netAnoGam1,9 netAnoGam1,60 mr twinscan,164 mrna est,9 est,468 est,484 est,567 intronEst,10 intronEst,543 intronEst,559 intronEst,642 mrna,9 mrna,14 mrna,129 mrna,362 mrna,402 mrna,409 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,349 much netAnoGam1,375 netAnoGam1,392 netDp2,375 netDp2,392 netDroYak1,375 netDroYak1,392 multiple chainAnoGam1,165 chainDp2,156 chainDroYak1,156 est,651 intronEst,726 mrna,365 mzDy1Dp2Ag1_phast,215 mzDy1Dp2Ag1_phast,312 mzDy1Dp2Ag1_phast,784 refGene,284 xenoRefGene,236 multiply mzDy1Dp2Ag1_phast,291 multiz mzDy1Dp2Ag1_phast,6 mzDy1Dp2Ag1_phast,37 mzDy1Dp2Ag1_phast,294 mzDy1Dp2Ag1_phast,557 mzDy1Dp2Ag1_phast,760 must intronEst,63 mutation chainAnoGam1,154 chainDp2,145 chainDroYak1,145 myers blastHg16KG,162 genomicSuperDups,269 myriad blatFugu,49 n miRNA,210 name chainAnoGam1,284 chainDp2,275 chainDroYak1,275 est,201 intronEst,276 mrna,147 pscreen,76 refGene,157 refGene,167 refGene,172 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainAnoGam1,212 chainDp2,203 chainDroYak1,203 refGene,179 xenoRefGene,131 nat anophelesEcores,223 native augustusGene,295 natl chainAnoGam1,518 chainDp2,498 chainDroYak1,498 mzDy1Dp2Ag1_phast,744 netAnoGam1,499 netDp2,523 netDroYak1,499 natural netAnoGam1,313 netDp2,313 netDroYak1,313 nbsp chainAnoGam1,379 ncbi blastHg16KG,146 refGene,25 refGene,338 refGene,365 xenoRefGene,29 xenoRefGene,290 nearby blatFugu,177 necessary netAnoGam1,297 netDp2,297 netDroYak1,297 nematodes augustusGene,211 net mzDy1Dp2Ag1_phast,719 netAnoGam1,3 netAnoGam1,12 netDp2,3 netDp2,12 netDroYak1,3 netDroYak1,12 netclass mzDy1Dp2Ag1_phast,577 netAnoGam1,367 netAnoGam1,410 netDp2,367 netDp2,434 netDroYak1,367 netDroYak1,410 nets netAnoGam1,465 netDp2,489 netDroYak1,465 netsyntenic mzDy1Dp2Ag1_phast,575 netAnoGam1,335 netAnoGam1,408 netDp2,335 netDp2,432 netDroYak1,335 netDroYak1,408 new augustusGene,329 miRNA,291 mzDy1Dp2Ag1_phast,690 newer est,519 intronEst,594 rmsk,236 next blastHg16KG,61 chainAnoGam1,263 chainAnoGam1,292 chainDp2,254 chainDp2,283 chainDroYak1,254 chainDroYak1,283 mzDy1Dp2Ag1_phast,361 nielsen mzDy1Dp2Ag1_phast,682 nig augustusGene,270 nigroviridis anophelesEcores,220 no blastHg16KG,98 est,95 intronEst,170 microsat,73 nomenclature miRNA,255 non-coding augustusGene,75 bdgpNonCoding,2 bdgpNonCoding,3 bdgpNonCoding,15 refGene,232 xenoRefGene,184 non-conserved mzDy1Dp2Ag1_phast,387 non-d mzDy1Dp2Ag1_phast,188 xenoRefGene,3 non-mrna est,588 intronEst,663 non-protein-coding refGene,20 refGene,240 xenoRefGene,18 xenoRefGene,192 non-redundant refGene,371 non-repeatmasked genomicSuperDups,8 genomicSuperDups,101 nonsyn netAnoGam1,238 netDp2,238 netDroYak1,238 nor blatFugu,159 not blatFugu,155 est,341 est,448 est,475 est,489 intronEst,416 intronEst,523 intronEst,550 intronEst,564 miRNA,140 mrna,287 mzDy1Dp2Ag1_phast,139 mzDy1Dp2Ag1_phast,207 mzDy1Dp2Ag1_phast,470 netAnoGam1,302 netDp2,302 netDroYak1,302 rmsk,272 note est,619 intronEst,694 mzDy1Dp2Ag1_phast,462 rmsk,230 novo augustusGene,304 ns gap,39 gap,44 netAnoGam1,382 netDp2,382 netDroYak1,382 nuclear rmsk,126 rmsk,134 nucleic est,723 intronEst,798 miRNA,256 miRNA,275 microsat,125 mrna,435 refGene,379 simpleRepeat,85 nucleotide mzDy1Dp2Ag1_phast,432 number anophelesEcores,213 augustusGene,153 gap,42 intronEst,147 pscreen,93 rmsk,203 numbers mzDy1Dp2Ag1_phast,163 o anophelesEcores,139 anophelesEcores,188 obtain mzDy1Dp2Ag1_phast,490 obtained augustusGene,126 netDp2,412 occur simpleRepeat,36 oct augustusGene,334 blastHg16KG,175 of anophelesEcores,55 anophelesEcores,76 anophelesEcores,210 augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastHg16KG,20 blastHg16KG,111 blastHg16KG,123 blastHg16KG,131 blastHg16KG,144 blatFugu,59 blatFugu,115 blatFugu,131 blatFugu,141 chainAnoGam1,20 chainAnoGam1,152 chainAnoGam1,172 chainAnoGam1,221 chainAnoGam1,275 chainAnoGam1,285 chainAnoGam1,348 chainAnoGam1,353 chainAnoGam1,371 chainAnoGam1,442 chainAnoGam1,464 chainDp2,20 chainDp2,143 chainDp2,163 chainDp2,212 chainDp2,266 chainDp2,276 chainDp2,339 chainDp2,344 chainDp2,362 chainDp2,422 chainDp2,444 chainDroYak1,20 chainDroYak1,143 chainDroYak1,163 chainDroYak1,212 chainDroYak1,266 chainDroYak1,276 chainDroYak1,339 chainDroYak1,344 chainDroYak1,362 chainDroYak1,422 chainDroYak1,444 cytoBand,27 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,466 est,482 est,500 est,517 est,579 est,587 est,591 est,671 flyreg,28 flyreg,35 flyreg,74 flyreg,111 gap,38 gap,43 gcPercent,20 genomicSuperDups,4 genomicSuperDups,7 genomicSuperDups,36 genomicSuperDups,62 genomicSuperDups,91 genomicSuperDups,100 genomicSuperDups,110 genomicSuperDups,135 genomicSuperDups,139 genomicSuperDups,143 genomicSuperDups,191 genomicSuperDups,203 genomicSuperDups,252 genscan,43 genscan,110 genscan,134 genscan,212 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,541 intronEst,557 intronEst,575 intronEst,592 intronEst,654 intronEst,662 intronEst,666 intronEst,746 miRNA,33 miRNA,82 miRNA,112 miRNA,135 miRNA,186 miRNA,203 miRNA,221 miRNA,233 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,385 mzDy1Dp2Ag1_phast,18 mzDy1Dp2Ag1_phast,39 mzDy1Dp2Ag1_phast,91 mzDy1Dp2Ag1_phast,130 mzDy1Dp2Ag1_phast,159 mzDy1Dp2Ag1_phast,173 mzDy1Dp2Ag1_phast,201 mzDy1Dp2Ag1_phast,216 mzDy1Dp2Ag1_phast,262 mzDy1Dp2Ag1_phast,268 mzDy1Dp2Ag1_phast,281 mzDy1Dp2Ag1_phast,333 mzDy1Dp2Ag1_phast,341 mzDy1Dp2Ag1_phast,410 mzDy1Dp2Ag1_phast,421 mzDy1Dp2Ag1_phast,430 mzDy1Dp2Ag1_phast,476 mzDy1Dp2Ag1_phast,518 mzDy1Dp2Ag1_phast,527 mzDy1Dp2Ag1_phast,537 mzDy1Dp2Ag1_phast,541 mzDy1Dp2Ag1_phast,566 mzDy1Dp2Ag1_phast,618 mzDy1Dp2Ag1_phast,705 netAnoGam1,29 netAnoGam1,172 netAnoGam1,192 netAnoGam1,376 netAnoGam1,417 netAnoGam1,463 netDp2,29 netDp2,172 netDp2,192 netDp2,376 netDp2,428 netDp2,441 netDp2,487 netDroYak1,29 netDroYak1,172 netDroYak1,192 netDroYak1,376 netDroYak1,417 netDroYak1,463 pscreen,19 pscreen,29 pscreen,54 pscreen,61 pscreen,133 pscreen,154 pscreen,221 refGene,84 refGene,103 refGene,117 refGene,133 refGene,169 refGene,272 refGene,304 refGene,374 rmsk,39 rmsk,59 rmsk,84 rmsk,122 rmsk,176 rmsk,186 rmsk,204 rmsk,218 rmsk,314 simpleRepeat,40 twinscan,31 twinscan,100 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,224 xenoRefGene,256 off chainAnoGam1,254 chainAnoGam1,260 chainDp2,245 chainDp2,251 chainDroYak1,245 chainDroYak1,251 refGene,182 xenoRefGene,134 offers genscan,79 twinscan,69 often chainAnoGam1,183 chainAnoGam1,195 chainDp2,174 chainDp2,186 chainDroYak1,174 chainDroYak1,186 oligo-dt est,459 intronEst,534 olivier anophelesEcores,129 on augustusGene,29 augustusGene,37 augustusGene,151 blastHg16KG,153 chainAnoGam1,242 chainAnoGam1,268 chainDp2,233 chainDp2,259 chainDroYak1,233 chainDroYak1,259 est,232 est,270 flyreg,63 flyreg,71 genscan,27 genscan,52 intronEst,307 intronEst,345 miRNA,147 miRNA,315 miRNA,359 mrna,178 mrna,216 mzDy1Dp2Ag1_phast,30 mzDy1Dp2Ag1_phast,166 mzDy1Dp2Ag1_phast,251 mzDy1Dp2Ag1_phast,328 mzDy1Dp2Ag1_phast,472 netAnoGam1,140 netAnoGam1,154 netAnoGam1,204 netAnoGam1,209 netAnoGam1,224 netAnoGam1,263 netDp2,140 netDp2,154 netDp2,204 netDp2,209 netDp2,224 netDp2,263 netDroYak1,140 netDroYak1,154 netDroYak1,204 netDroYak1,209 netDroYak1,224 netDroYak1,263 pscreen,156 refGene,143 rmsk,74 rmsk,243 twinscan,106 twinscan,110 one augustusGene,169 chainAnoGam1,160 chainAnoGam1,276 chainDp2,151 chainDp2,267 chainDroYak1,151 chainDroYak1,267 est,173 est,273 est,306 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 mzDy1Dp2Ag1_phast,357 netAnoGam1,191 netAnoGam1,290 netAnoGam1,386 netDp2,191 netDp2,290 netDp2,386 netDroYak1,191 netDroYak1,290 netDroYak1,386 online pscreen,27 only blatFugu,233 chainAnoGam1,272 chainDp2,263 chainDroYak1,263 est,157 est,286 est,359 est,392 est,662 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,737 miRNA,88 microsat,61 mrna,103 mrna,232 mrna,305 mrna,376 refGene,249 refGene,295 xenoRefGene,201 xenoRefGene,247 opposite netAnoGam1,236 netDp2,236 netDroYak1,236 option augustusGene,167 augustusGene,187 est,405 genscan,94 intronEst,480 mrna,342 refGene,162 refGene,214 twinscan,84 xenoRefGene,114 xenoRefGene,166 optional refGene,192 xenoRefGene,144 options genscan,85 mzDy1Dp2Ag1_phast,284 twinscan,75 or blastHg16KG,199 blatFugu,66 blatFugu,111 blatFugu,127 chainAnoGam1,98 chainAnoGam1,122 chainAnoGam1,155 chainDp2,89 chainDp2,113 chainDp2,146 chainDroYak1,89 chainDroYak1,113 chainDroYak1,146 est,174 est,298 est,317 est,326 est,391 est,441 est,473 est,487 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,516 intronEst,548 intronEst,562 mrna,120 mrna,244 mrna,263 mrna,272 mzDy1Dp2Ag1_phast,246 netAnoGam1,175 netAnoGam1,358 netAnoGam1,387 netDp2,175 netDp2,358 netDp2,387 netDroYak1,175 netDroYak1,358 netDroYak1,387 refGene,57 refGene,139 refGene,180 xenoRefGene,132 orange genomicSuperDups,55 order pscreen,92 ordered pscreen,113 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 organism chainAnoGam1,251 chainAnoGam1,281 chainDp2,242 chainDp2,272 chainDroYak1,242 chainDroYak1,272 organism-specific blastHg16KG,93 organisms netAnoGam1,403 netDp2,403 netDroYak1,403 rmsk,261 xenoRefGene,21 organization genomicSuperDups,138 genomicSuperDups,303 organizes chainAnoGam1,325 chainDp2,316 chainDroYak1,316 orientation blatFugu,114 blatFugu,130 miRNA,46 miRNA,55 netAnoGam1,237 netDp2,237 netDroYak1,237 pscreen,60 pscreen,68 pscreen,73 orientations blatFugu,140 orthologous netAnoGam1,39 netDp2,39 netDroYak1,39 ostell est,717 intronEst,792 mrna,429 other augustusGene,208 netAnoGam1,102 netAnoGam1,195 netDp2,102 netDp2,195 netDroYak1,102 netDroYak1,195 rmsk,165 xenoRefGene,1 xenoRefGene,22 otherwise est,643 intronEst,718 mzDy1Dp2Ag1_phast,223 ouml augustusGene,269 our augustusGene,43 genscan,58 out chainAnoGam1,347 chainDp2,338 chainDroYak1,338 outputs rmsk,35 outside est,578 intronEst,653 over blastHg16KG,107 blastHg16KG,121 chainAnoGam1,168 chainAnoGam1,362 chainDp2,159 chainDp2,353 chainDroYak1,159 chainDroYak1,353 overall mzDy1Dp2Ag1_phast,80 overlapping chainAnoGam1,74 chainAnoGam1,148 chainDp2,74 chainDp2,139 chainDroYak1,74 chainDroYak1,139 overlaps genomicSuperDups,77 p anophelesEcores,200 anophelesEcores,202 genscan,205 pscreen,20 pscreen,47 pscreen,83 twinscan,160 p-element pscreen,7 p-screen pscreen,25 pscreen,144 pac chainAnoGam1,487 chainDp2,467 chainDroYak1,467 mzDy1Dp2Ag1_phast,815 pack chainAnoGam1,204 chainDp2,195 chainDroYak1,195 page est,113 genscan,78 genscan,123 intronEst,188 miRNA,116 mrna,59 refGene,49 refGene,121 refGene,123 rmsk,77 twinscan,68 twinscan,114 xenoRefGene,100 pages netAnoGam1,268 netDp2,268 netDroYak1,268 paired blatFugu,42 pairs blatFugu,89 blatFugu,98 pairwise chainAnoGam1,483 chainDp2,463 chainDroYak1,463 genomicSuperDups,187 mzDy1Dp2Ag1_phast,89 mzDy1Dp2Ag1_phast,107 mzDy1Dp2Ag1_phast,134 mzDy1Dp2Ag1_phast,288 mzDy1Dp2Ag1_phast,811 paralogs chainAnoGam1,198 chainDp2,189 chainDroYak1,189 part blastHg16KG,143 netAnoGam1,28 netDp2,28 netDroYak1,28 particular augustusGene,234 chainAnoGam1,170 chainDp2,161 chainDroYak1,161 parts blatFugu,108 miRNA,72 path genomicSuperDups,26 patterns augustusGene,56 paul miRNA,197 pedersen mzDy1Dp2Ag1_phast,634 penalty blastHg16KG,100 penn mzDy1Dp2Ag1_phast,568 pennsylvania chainAnoGam1,405 chainDp2,385 chainDroYak1,385 netAnoGam1,428 netDp2,452 netDroYak1,428 peptides blastHg16KG,22 percent gcPercent,2 gcPercent,15 percentage gcPercent,3 gcPercent,19 perfect microsat,31 perhaps est,569 intronEst,644 period microsat,65 permitted rmsk,273 phastcons mzDy1Dp2Ag1_phast,8 mzDy1Dp2Ag1_phast,36 mzDy1Dp2Ag1_phast,320 mzDy1Dp2Ag1_phast,322 mzDy1Dp2Ag1_phast,372 mzDy1Dp2Ag1_phast,468 mzDy1Dp2Ag1_phast,496 mzDy1Dp2Ag1_phast,505 mzDy1Dp2Ag1_phast,583 mzDy1Dp2Ag1_phast,602 phylo-hmm mzDy1Dp2Ag1_phast,330 mzDy1Dp2Ag1_phast,376 mzDy1Dp2Ag1_phast,412 phylo-hmms mzDy1Dp2Ag1_phast,600 phylogenetic mzDy1Dp2Ag1_phast,32 mzDy1Dp2Ag1_phast,677 phylogeny mzDy1Dp2Ag1_phast,417 place netAnoGam1,287 netDp2,287 netDroYak1,287 placed netAnoGam1,329 netDp2,329 netDroYak1,329 places est,652 intronEst,727 mrna,366 refGene,285 xenoRefGene,237 plasmid blatFugu,64 est,430 intronEst,505 plasmids blatFugu,78 play genomicSuperDups,119 please flyreg,94 miRNA,236 pscreen,173 refGene,39 plotted mzDy1Dp2Ag1_phast,391 plotting mzDy1Dp2Ag1_phast,592 pmc anophelesEcores,182 blatFugu,250 chainAnoGam1,532 chainAnoGam1,563 chainDp2,512 chainDp2,543 chainDroYak1,512 chainDroYak1,543 est,735 est,753 genomicSuperDups,322 intronEst,810 intronEst,828 miRNA,268 miRNA,287 miRNA,354 miRNA,378 microsat,136 mrna,447 mrna,465 mzDy1Dp2Ag1_phast,671 mzDy1Dp2Ag1_phast,716 mzDy1Dp2Ag1_phast,758 mzDy1Dp2Ag1_phast,801 mzDy1Dp2Ag1_phast,851 netAnoGam1,513 netAnoGam1,544 netDp2,537 netDp2,568 netDroYak1,513 netDroYak1,544 pscreen,232 refGene,357 refGene,391 simpleRepeat,96 xenoRefGene,310 pmc1182216 mzDy1Dp2Ag1_phast,672 pmc1206396 mzDy1Dp2Ag1_phast,717 pmc1347474 miRNA,269 pmc1370393 miRNA,355 pmc1470905 pscreen,233 pmc148217 microsat,137 simpleRepeat,97 pmc187518 blatFugu,251 est,754 intronEst,829 miRNA,379 mrna,466 refGene,358 xenoRefGene,311 pmc208784 chainAnoGam1,533 chainDp2,513 chainDroYak1,513 mzDy1Dp2Ag1_phast,759 netAnoGam1,514 netDp2,538 netDroYak1,514 pmc308757 miRNA,288 pmc308779 est,736 intronEst,811 mrna,448 pmc311093 genomicSuperDups,323 pmc383317 mzDy1Dp2Ag1_phast,802 pmc403732 anophelesEcores,183 pmc430961 chainAnoGam1,564 chainDp2,544 chainDroYak1,544 mzDy1Dp2Ag1_phast,852 netAnoGam1,545 netDp2,569 netDroYak1,545 pmc539979 refGene,392 pmid anophelesEcores,180 anophelesEcores,230 augustusGene,314 augustusGene,339 blatFugu,248 chainAnoGam1,492 chainAnoGam1,530 chainAnoGam1,561 chainDp2,472 chainDp2,510 chainDp2,541 chainDroYak1,472 chainDroYak1,510 chainDroYak1,541 est,733 est,751 flyreg,128 genomicSuperDups,289 genomicSuperDups,320 genscan,229 intronEst,808 intronEst,826 miRNA,266 miRNA,285 miRNA,308 miRNA,352 miRNA,376 microsat,134 mrna,445 mrna,463 mzDy1Dp2Ag1_phast,628 mzDy1Dp2Ag1_phast,669 mzDy1Dp2Ag1_phast,714 mzDy1Dp2Ag1_phast,756 mzDy1Dp2Ag1_phast,799 mzDy1Dp2Ag1_phast,820 mzDy1Dp2Ag1_phast,849 netAnoGam1,511 netAnoGam1,542 netDp2,535 netDp2,566 netDroYak1,511 netDroYak1,542 pscreen,230 refGene,355 refGene,389 rmsk,324 simpleRepeat,94 twinscan,178 xenoRefGene,308 point est,512 intronEst,587 pollard flyreg,70 flyreg,133 poly-a augustusGene,62 est,464 est,538 intronEst,539 intronEst,613 polymorphic microsat,41 simpleRepeat,46 population microsat,44 portions miRNA,32 position mzDy1Dp2Ag1_phast,238 positions miRNA,81 mzDy1Dp2Ag1_phast,183 pscreen,40 possible mzDy1Dp2Ag1_phast,535 netAnoGam1,96 netDp2,96 netDroYak1,96 possibly simpleRepeat,18 posterior mzDy1Dp2Ag1_phast,397 pp mzDy1Dp2Ag1_phast,694 pr pscreen,203 pre-mrna genscan,185 precursor miRNA,62 miRNA,120 miRNA,137 predicted blastHg16KG,25 blastHg16KG,39 blatFugu,147 miRNA,30 miRNA,145 refGene,91 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 refGene,76 twinscan,37 twinscan,63 twinscan,171 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 bdgpGene,10 bdgpNonCoding,10 blastHg16KG,13 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 miRNA,8 refGene,8 refGene,205 twinscan,4 twinscan,13 twinscan,102 xenoRefGene,10 xenoRefGene,157 predicts twinscan,18 predominant blatFugu,71 present rmsk,44 primary miRNA,35 primed est,456 intronEst,531 primer est,443 intronEst,518 priming est,539 intronEst,614 probabilistic mzDy1Dp2Ag1_phast,334 probability mzDy1Dp2Ag1_phast,398 proc chainAnoGam1,517 chainDp2,497 chainDroYak1,497 mzDy1Dp2Ag1_phast,743 netAnoGam1,498 netDp2,522 netDroYak1,498 process mzDy1Dp2Ag1_phast,340 mzDy1Dp2Ag1_phast,354 mzDy1Dp2Ag1_phast,434 mzDy1Dp2Ag1_phast,700 netAnoGam1,311 netDp2,311 netDroYak1,311 processed chainAnoGam1,186 chainDp2,177 chainDroYak1,177 produce blastHg16KG,191 produced blatFugu,46 blatFugu,122 est,693 intronEst,768 mrna,405 netDp2,418 refGene,323 xenoRefGene,275 produces miRNA,63 producing mzDy1Dp2Ag1_phast,519 program anophelesEcores,32 augustusGene,21 augustusGene,257 blastHg16KG,56 blastHg16KG,81 chainAnoGam1,316 chainAnoGam1,358 chainAnoGam1,433 chainAnoGam1,436 chainDp2,307 chainDp2,349 chainDp2,413 chainDp2,416 chainDroYak1,307 chainDroYak1,349 chainDroYak1,413 chainDroYak1,416 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,358 mzDy1Dp2Ag1_phast,323 netAnoGam1,281 netAnoGam1,334 netAnoGam1,366 netAnoGam1,455 netDp2,281 netDp2,334 netDp2,366 netDp2,479 netDroYak1,281 netDroYak1,334 netDroYak1,366 netDroYak1,455 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 twinscan,17 programs mzDy1Dp2Ag1_phast,467 mzDy1Dp2Ag1_phast,554 netAnoGam1,411 netDp2,435 netDroYak1,411 project genomicSuperDups,311 pscreen,6 pscreen,34 pscreen,115 pscreen,160 pscreen,168 pscreen,214 refGene,340 xenoRefGene,292 projects est,533 est,552 est,582 intronEst,608 intronEst,627 intronEst,657 protein blastHg16KG,114 blastHg16KG,133 blatFugu,121 blatFugu,148 blatFugu,173 protein-coding anophelesEcores,70 augustusGene,73 bdgpGene,3 bdgpGene,15 refGene,18 refGene,238 xenoRefGene,16 xenoRefGene,190 proteins blastHg16KG,2 blastHg16KG,4 blastHg16KG,40 refGene,378 provided anophelesEcores,214 blatFugu,23 blatFugu,224 genomicSuperDups,236 pscreen,102 provides flyreg,24 miRNA,313 providing augustusGene,254 bdgpGene,27 bdgpNonCoding,27 cytoBand,43 flyreg,85 flyreg,135 genscan,175 pscreen,170 rmsk,292 twinscan,153 provisional refGene,93 xenoRefGene,72 pruitt refGene,359 pseudo chainDp2,2 netDp2,2 pseudogenes chainAnoGam1,187 chainAnoGam1,201 chainDp2,178 chainDp2,192 chainDroYak1,178 chainDroYak1,192 pseudoobscura chainDp2,5 chainDp2,22 chainDp2,57 chainDp2,111 chainDp2,291 chainDp2,323 mzDy1Dp2Ag1_phast,63 mzDy1Dp2Ag1_phast,95 mzDy1Dp2Ag1_phast,306 netDp2,5 netDp2,22 netDp2,48 twinscan,8 psl est,57 intronEst,135 mrna,38 pt anophelesEcores,155 public est,704 intronEst,779 mrna,416 publication blatFugu,232 miRNA,312 publications pscreen,155 publicly rmsk,241 published flyreg,92 pull-down refGene,221 xenoRefGene,173 purpose simpleRepeat,32 putative blastHg16KG,84 genomicSuperDups,20 pw genomicSuperDups,272 qu anophelesEcores,203 quality est,75 mrna,56 quentin miRNA,202 query blastHg16KG,113 blastHg16KG,125 blatFugu,117 rmsk,47 rmsk,61 question mzDy1Dp2Ag1_phast,425 quickly mrna,330 refGene,200 xenoRefGene,152 quite simpleRepeat,45 quot chainAnoGam1,63 chainAnoGam1,65 chainAnoGam1,259 chainAnoGam1,261 chainDp2,63 chainDp2,65 chainDp2,250 chainDp2,252 chainDroYak1,63 chainDroYak1,65 chainDroYak1,250 chainDroYak1,252 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 genomicSuperDups,171 genomicSuperDups,173 genomicSuperDups,205 genomicSuperDups,207 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 mzDy1Dp2Ag1_phast,219 mzDy1Dp2Ag1_phast,220 mzDy1Dp2Ag1_phast,224 mzDy1Dp2Ag1_phast,225 r anophelesEcores,143 augustusGene,291 chainAnoGam1,497 chainAnoGam1,543 chainDp2,477 chainDp2,523 chainDroYak1,477 chainDroYak1,523 mzDy1Dp2Ag1_phast,683 mzDy1Dp2Ag1_phast,723 mzDy1Dp2Ag1_phast,774 mzDy1Dp2Ag1_phast,831 netAnoGam1,478 netAnoGam1,524 netDp2,502 netDp2,548 netDroYak1,478 netDroYak1,524 r3 mzDy1Dp2Ag1_phast,54 ra genomicSuperDups,260 raja genomicSuperDups,243 random augustusGene,119 est,535 intronEst,610 random-primed est,581 intronEst,656 raney blastHg16KG,201 ranked netAnoGam1,278 netDp2,278 netDroYak1,278 rate mzDy1Dp2Ag1_phast,617 rather est,536 intronEst,611 rc chainAnoGam1,545 chainDp2,525 chainDroYak1,525 mzDy1Dp2Ag1_phast,833 netAnoGam1,526 netDp2,550 netDroYak1,526 rmsk,170 read est,434 intronEst,509 reads blatFugu,45 blatFugu,62 rearrangement chainAnoGam1,510 chainDp2,490 chainDroYak1,490 mzDy1Dp2Ag1_phast,736 netAnoGam1,45 netAnoGam1,182 netAnoGam1,491 netDp2,45 netDp2,182 netDp2,515 netDroYak1,45 netDroYak1,182 netDroYak1,491 reasonably est,502 est,525 intronEst,577 intronEst,600 recent genomicSuperDups,149 genomicSuperDups,275 record refGene,88 xenoRefGene,67 records refGene,63 red genomicSuperDups,60 reduced intronEst,100 refer genscan,144 reference pscreen,43 pscreen,179 refGene,27 refGene,46 refGene,366 xenoRefGene,31 references anophelesEcores,137 augustusGene,285 blatFugu,234 chainAnoGam1,475 chainDp2,455 chainDroYak1,455 est,710 genomicSuperDups,254 genscan,152 genscan,179 intronEst,785 miRNA,175 miRNA,229 microsat,113 mrna,422 mzDy1Dp2Ag1_phast,599 netAnoGam1,474 netDp2,498 netDroYak1,474 pscreen,187 refGene,341 rmsk,103 rmsk,303 simpleRepeat,73 twinscan,135 twinscan,156 xenoRefGene,293 reflect mzDy1Dp2Ag1_phast,415 reflects rmsk,183 refseq refGene,1 refGene,3 refGene,11 refGene,30 refGene,48 refGene,62 refGene,87 refGene,257 refGene,339 refGene,368 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,291 region anophelesEcores,61 chainAnoGam1,171 chainDp2,162 chainDroYak1,162 gap,26 genomicSuperDups,80 netAnoGam1,85 netDp2,85 netDroYak1,85 regions anophelesEcores,14 anophelesEcores,23 anophelesEcores,90 augustusGene,76 chainAnoGam1,105 chainDp2,96 chainDroYak1,96 genomicSuperDups,17 genscan,48 microsat,14 mzDy1Dp2Ag1_phast,382 mzDy1Dp2Ag1_phast,388 mzDy1Dp2Ag1_phast,482 mzDy1Dp2Ag1_phast,487 mzDy1Dp2Ag1_phast,526 netAnoGam1,40 netDp2,40 netDroYak1,40 simpleRepeat,39 registry miRNA,125 miRNA,162 miRNA,274 regulation flyreg,10 reinert genomicSuperDups,261 reinserted genomicSuperDups,184 related augustusGene,242 relationship est,96 intronEst,171 netAnoGam1,344 netDp2,344 netDroYak1,344 relative mzDy1Dp2Ag1_phast,184 netAnoGam1,360 netDp2,360 netDroYak1,360 release anophelesEcores,114 cytoBand,19 relevant est,160 intronEst,235 mrna,106 rely mzDy1Dp2Ag1_phast,471 remaining blastHg16KG,187 chainAnoGam1,393 chainDp2,373 chainDroYak1,373 remove mzDy1Dp2Ag1_phast,140 removing genomicSuperDups,164 repbase rmsk,81 rmsk,93 rmsk,306 repeat blatFugu,195 microsat,83 rmsk,139 rmsk,146 rmsk,197 rmsk,223 rmsk,296 simpleRepeat,47 repeating rmsk,2 repeatmasker blatFugu,192 chainAnoGam1,432 chainDp2,412 chainDroYak1,412 netAnoGam1,456 netDp2,480 netDroYak1,456 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,220 rmsk,251 repeats chainAnoGam1,424 chainDp2,404 chainDroYak1,404 genomicSuperDups,12 genomicSuperDups,163 genomicSuperDups,166 genomicSuperDups,181 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 netAnoGam1,447 netDp2,471 netDroYak1,447 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,123 rmsk,150 rmsk,154 rmsk,156 rmsk,158 rmsk,166 rmsk,262 rmsk,269 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 repetitive rmsk,315 reported flyreg,46 represent chainAnoGam1,103 chainAnoGam1,132 chainDp2,94 chainDp2,123 chainDroYak1,94 chainDroYak1,123 est,41 intronEst,52 netAnoGam1,132 netAnoGam1,137 netDp2,132 netDp2,137 netDroYak1,132 netDroYak1,137 represented gap,13 miRNA,25 rmsk,49 required genomicSuperDups,115 requiring blatFugu,175 intronEst,88 res anophelesEcores,174 blatFugu,242 chainAnoGam1,555 chainDp2,535 chainDroYak1,535 est,725 est,745 genomicSuperDups,314 intronEst,800 intronEst,820 miRNA,258 miRNA,277 miRNA,370 microsat,127 mrna,437 mrna,457 mzDy1Dp2Ag1_phast,663 mzDy1Dp2Ag1_phast,793 mzDy1Dp2Ag1_phast,843 netAnoGam1,536 netDp2,560 netDroYak1,536 refGene,349 refGene,381 simpleRepeat,87 xenoRefGene,302 research rmsk,90 result chainAnoGam1,145 chainDp2,136 chainDroYak1,136 resulting blatFugu,54 mzDy1Dp2Ag1_phast,311 results flyreg,27 retrieve est,544 intronEst,619 retroposons rmsk,144 rev mzDy1Dp2Ag1_phast,457 reverse est,419 est,453 est,470 intronEst,494 intronEst,528 intronEst,545 miRNA,54 pscreen,72 reversible mzDy1Dp2Ag1_phast,456 review refGene,85 xenoRefGene,64 reviewed refGene,95 xenoRefGene,74 richards mzDy1Dp2Ag1_phast,648 riemer mzDy1Dp2Ag1_phast,765 right-pointing pscreen,64 rj miRNA,241 rna est,104 est,413 intronEst,179 intronEst,488 miRNA,346 refGene,26 refGene,281 refGene,327 rmsk,157 rmsk,160 xenoRefGene,30 xenoRefGene,233 xenoRefGene,279 rnas refGene,258 xenoRefGene,210 robert chainAnoGam1,470 chainDp2,450 chainDroYak1,450 netAnoGam1,469 netDp2,493 netDroYak1,469 roest anophelesEcores,28 anophelesEcores,184 role genomicSuperDups,122 rolling rmsk,171 rosenbloom mzDy1Dp2Ag1_phast,640 mzDy1Dp2Ag1_phast,775 roskin mzDy1Dp2Ag1_phast,771 ross chainAnoGam1,421 chainDp2,401 chainDroYak1,401 netAnoGam1,444 netDp2,468 netDroYak1,444 roth anophelesEcores,150 rrna rmsk,162 rubin pscreen,206 rubripes blatFugu,208 run chainAnoGam1,361 chainDp2,352 chainDroYak1,352 running blatFugu,198 rv genomicSuperDups,264 rw pscreen,191 s augustusGene,104 augustusGene,221 augustusGene,319 blastHg16KG,134 chainAnoGam1,505 chainAnoGam1,522 chainAnoGam1,535 chainDp2,485 chainDp2,502 chainDp2,515 chainDroYak1,485 chainDroYak1,502 chainDroYak1,515 genomicSuperDups,266 genscan,190 genscan,194 genscan,210 miRNA,156 miRNA,167 miRNA,239 miRNA,244 miRNA,271 miRNA,335 mzDy1Dp2Ag1_phast,649 mzDy1Dp2Ag1_phast,731 mzDy1Dp2Ag1_phast,748 mzDy1Dp2Ag1_phast,823 netAnoGam1,486 netAnoGam1,503 netAnoGam1,516 netDp2,510 netDp2,527 netDp2,540 netDroYak1,486 netDroYak1,503 netDroYak1,516 pscreen,116 refGene,136 refGene,146 rmsk,18 rmsk,252 twinscan,143 s140-8 twinscan,177 sabatier miRNA,198 saccharomyces augustusGene,223 salzberg genscan,189 sam miRNA,219 same anophelesEcores,111 blatFugu,157 blatFugu,162 netAnoGam1,211 netAnoGam1,226 netDp2,211 netDp2,226 netDroYak1,211 netDroYak1,226 samonte genomicSuperDups,263 sample augustusGene,133 sampling augustusGene,129 sanger miRNA,225 santa chainAnoGam1,445 chainDp2,425 chainDroYak1,425 netAnoGam1,419 netDp2,443 netDroYak1,419 satellite rmsk,155 scaffolds blatFugu,84 blatFugu,93 scarpelli anophelesEcores,152 school netDp2,427 schulze pscreen,204 schwartz chainAnoGam1,412 chainAnoGam1,534 chainDp2,392 chainDp2,514 chainDroYak1,392 chainDroYak1,514 genomicSuperDups,265 mzDy1Dp2Ag1_phast,562 mzDy1Dp2Ag1_phast,822 netAnoGam1,435 netAnoGam1,515 netDp2,459 netDp2,539 netDroYak1,435 netDroYak1,515 sci chainAnoGam1,520 chainDp2,500 chainDroYak1,500 mzDy1Dp2Ag1_phast,746 netAnoGam1,501 netDp2,525 netDroYak1,501 science genomicSuperDups,282 genscan,203 scientists est,708 intronEst,783 mrna,420 refGene,332 xenoRefGene,284 score miRNA,96 miRNA,100 mzDy1Dp2Ag1_phast,82 mzDy1Dp2Ag1_phast,145 scores mzDy1Dp2Ag1_phast,9 mzDy1Dp2Ag1_phast,318 mzDy1Dp2Ag1_phast,326 mzDy1Dp2Ag1_phast,414 mzDy1Dp2Ag1_phast,492 mzDy1Dp2Ag1_phast,523 scoring chainAnoGam1,37 chainAnoGam1,47 chainAnoGam1,369 chainAnoGam1,386 chainAnoGam1,482 chainDp2,37 chainDp2,47 chainDp2,360 chainDp2,366 chainDp2,462 chainDroYak1,37 chainDroYak1,47 chainDroYak1,360 chainDroYak1,366 chainDroYak1,462 mzDy1Dp2Ag1_phast,810 scott chainAnoGam1,411 chainDp2,391 chainDroYak1,391 mzDy1Dp2Ag1_phast,561 netAnoGam1,434 netDp2,458 netDroYak1,434 screens rmsk,22 scrna rmsk,164 se flyreg,101 search blastHg16KG,169 miRNA,300 searching genomicSuperDups,175 searls genscan,191 second blatFugu,126 section genscan,153 miRNA,176 mzDy1Dp2Ag1_phast,126 rmsk,104 twinscan,136 sections netAnoGam1,301 netDp2,301 netDroYak1,301 see anophelesEcores,92 augustusGene,42 blastHg16KG,155 flyreg,52 genomicSuperDups,210 genomicSuperDups,227 genscan,57 intronEst,118 miRNA,361 microsat,101 pscreen,142 pscreen,150 refGene,248 rmsk,278 simpleRepeat,63 xenoRefGene,200 segmental genomicSuperDups,1 genomicSuperDups,70 genomicSuperDups,117 genomicSuperDups,276 genomicSuperDups,301 segments genomicSuperDups,142 segurens anophelesEcores,146 select genscan,90 refGene,210 twinscan,80 xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 selecting microsat,60 semi-markov augustusGene,117 sense miRNA,45 sep chainAnoGam1,525 chainDp2,505 chainDroYak1,505 mzDy1Dp2Ag1_phast,69 mzDy1Dp2Ag1_phast,751 netAnoGam1,506 netDp2,530 netDroYak1,506 rmsk,320 sequence anophelesEcores,64 anophelesEcores,98 anophelesEcores,171 anophelesEcores,222 augustusGene,32 augustusGene,70 blastHg16KG,77 blatFugu,57 blatFugu,118 blatFugu,136 blatFugu,144 chainAnoGam1,82 chainAnoGam1,139 chainAnoGam1,485 chainDp2,130 chainDp2,465 chainDroYak1,130 chainDroYak1,465 cytoBand,22 est,21 est,92 est,390 est,399 est,545 est,683 est,698 est,705 gap,23 gap,34 genomicSuperDups,9 genomicSuperDups,94 genomicSuperDups,102 genomicSuperDups,108 genomicSuperDups,147 genomicSuperDups,170 genomicSuperDups,177 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,620 intronEst,758 intronEst,773 intronEst,780 mrna,336 mrna,397 mrna,410 mrna,417 mzDy1Dp2Ag1_phast,179 mzDy1Dp2Ag1_phast,190 mzDy1Dp2Ag1_phast,813 netAnoGam1,49 netDp2,49 netDroYak1,49 pscreen,44 refGene,316 refGene,328 refGene,367 refGene,372 rmsk,48 rmsk,62 xenoRefGene,268 xenoRefGene,280 sequences anophelesEcores,75 blastHg16KG,65 blatFugu,149 est,32 est,564 est,572 intronEst,43 intronEst,639 intronEst,647 miRNA,138 miRNA,251 microsat,26 microsat,124 mzDy1Dp2Ag1_phast,707 mzDy1Dp2Ag1_phast,786 refGene,28 refGene,47 rmsk,24 rmsk,32 simpleRepeat,84 xenoRefGene,32 sequencing blatFugu,44 cytoBand,7 cytoBandIdeo,12 gap,6 gcPercent,11 netAnoGam1,383 netDp2,383 netDp2,423 netDroYak1,383 pscreen,12 series gap,37 server twinscan,44 set anophelesEcores,54 blastHg16KG,149 flyreg,73 sets augustusGene,158 several mzDy1Dp2Ag1_phast,534 sf blastHg16KG,157 shaded est,70 mrna,51 shading intronEst,143 refGene,80 rmsk,178 rmsk,209 xenoRefGene,59 she genomicSuperDups,241 short mzDy1Dp2Ag1_phast,480 rmsk,124 shotgun blatFugu,20 should est,321 est,597 intronEst,396 intronEst,672 mrna,267 show intronEst,31 intronEst,64 pscreen,71 refGene,173 xenoRefGene,125 shown est,150 intronEst,225 miRNA,48 microsat,48 mrna,96 mzDy1Dp2Ag1_phast,110 mzDy1Dp2Ag1_phast,205 mzDy1Dp2Ag1_phast,227 shows anophelesEcores,20 augustusGene,15 augustusGene,108 bdgpGene,14 bdgpNonCoding,14 chainAnoGam1,18 chainDp2,18 chainDroYak1,18 cytoBand,11 est,15 flyreg,14 gcPercent,17 genomicSuperDups,16 genscan,13 intronEst,16 miRNA,13 mrna,16 mzDy1Dp2Ag1_phast,15 mzDy1Dp2Ag1_phast,78 mzDy1Dp2Ag1_phast,155 netAnoGam1,18 netDp2,18 netDroYak1,18 pscreen,16 refGene,14 xenoRefGene,14 side est,560 intronEst,635 siepel mzDy1Dp2Ag1_phast,368 mzDy1Dp2Ag1_phast,501 mzDy1Dp2Ag1_phast,586 mzDy1Dp2Ag1_phast,630 mzDy1Dp2Ag1_phast,673 signal augustusGene,48 augustusGene,63 signals genscan,34 genscan,187 signs intronEst,32 similar mzDy1Dp2Ag1_phast,450 twinscan,23 similarity genomicSuperDups,37 genomicSuperDups,44 genomicSuperDups,51 genomicSuperDups,59 genomicSuperDups,66 genomicSuperDups,179 simple microsat,57 microsat,85 rmsk,149 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainAnoGam1,61 chainDp2,61 chainDroYak1,61 sine rmsk,128 single blastHg16KG,102 chainAnoGam1,97 chainAnoGam1,106 chainAnoGam1,330 chainAnoGam1,336 chainDp2,88 chainDp2,97 chainDp2,321 chainDp2,327 chainDroYak1,88 chainDroYak1,97 chainDroYak1,321 chainDroYak1,327 est,594 est,647 intronEst,669 intronEst,722 miRNA,61 mrna,361 pscreen,215 refGene,280 xenoRefGene,232 single-lined chainAnoGam1,180 chainDp2,171 chainDroYak1,171 single-read est,31 intronEst,42 singleton anophelesEcores,36 site genscan,157 mzDy1Dp2Ag1_phast,346 mzDy1Dp2Ag1_phast,358 mzDy1Dp2Ag1_phast,394 sites augustusGene,54 augustusGene,59 flyreg,115 mzDy1Dp2Ag1_phast,453 mzDy1Dp2Ag1_phast,615 size blastHg16KG,96 mzDy1Dp2Ag1_phast,200 mzDy1Dp2Ag1_phast,212 mzDy1Dp2Ag1_phast,478 skepticism est,602 intronEst,677 sliding mzDy1Dp2Ag1_phast,474 small refGene,128 smit chainAnoGam1,429 chainAnoGam1,538 chainDp2,409 chainDp2,518 chainDroYak1,409 chainDroYak1,518 mzDy1Dp2Ag1_phast,769 mzDy1Dp2Ag1_phast,826 netAnoGam1,452 netAnoGam1,519 netDp2,476 netDp2,543 netDroYak1,452 netDroYak1,519 rmsk,17 rmsk,288 snrna rmsk,163 so mzDy1Dp2Ag1_phast,479 netAnoGam1,124 netDp2,124 netDroYak1,124 soft-masked rmsk,264 software mzDy1Dp2Ag1_phast,593 rmsk,221 some est,158 est,516 est,532 est,635 intronEst,233 intronEst,591 intronEst,607 intronEst,710 mrna,104 sometimes mzDy1Dp2Ag1_phast,514 simpleRepeat,50 sorted netAnoGam1,270 netDp2,270 netDroYak1,270 space mzDy1Dp2Ag1_phast,195 space-time mzDy1Dp2Ag1_phast,699 span netAnoGam1,83 netDp2,83 netDroYak1,83 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainAnoGam1,78 chainAnoGam1,142 chainAnoGam1,161 chainDp2,78 chainDp2,133 chainDp2,152 chainDroYak1,78 chainDroYak1,133 chainDroYak1,152 mzDy1Dp2Ag1_phast,24 mzDy1Dp2Ag1_phast,85 mzDy1Dp2Ag1_phast,131 mzDy1Dp2Ag1_phast,423 netAnoGam1,389 netDp2,389 netDroYak1,389 species-specific augustusGene,156 specific est,197 intronEst,272 miRNA,94 mrna,143 mzDy1Dp2Ag1_phast,237 simpleRepeat,53 spieth mzDy1Dp2Ag1_phast,644 splice augustusGene,53 genscan,156 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,89 springer mzDy1Dp2Ag1_phast,692 sr miRNA,333 st twinscan,150 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,524 intronEst,599 state chainAnoGam1,406 chainDp2,386 chainDroYak1,386 mzDy1Dp2Ag1_phast,379 mzDy1Dp2Ag1_phast,385 mzDy1Dp2Ag1_phast,409 mzDy1Dp2Ag1_phast,569 netAnoGam1,429 netDp2,453 netDroYak1,429 statistical augustusGene,47 mzDy1Dp2Ag1_phast,685 stefanie augustusGene,267 stem-loop miRNA,31 stock pscreen,91 pscreen,106 storage chainAnoGam1,463 chainDp2,443 chainDroYak1,443 netAnoGam1,462 netDp2,486 netDroYak1,462 strain pscreen,79 pscreen,98 pscreen,110 pscreen,117 strains pscreen,123 pscreen,183 strand blatFugu,100 chainAnoGam1,216 chainDp2,207 chainDroYak1,207 est,77 intronEst,152 structure augustusGene,113 miRNA,150 twinscan,170 structures augustusGene,164 genscan,215 studying netAnoGam1,43 netDp2,43 netDroYak1,43 submit refGene,53 submitted est,700 intronEst,775 mrna,412 submodel augustusGene,331 subsections chainAnoGam1,351 chainDp2,342 chainDroYak1,342 subsequently mzDy1Dp2Ag1_phast,302 subset est,136 intronEst,211 microsat,54 mrna,82 substantial chainAnoGam1,138 chainDp2,129 chainDroYak1,129 substitution mzDy1Dp2Ag1_phast,343 mzDy1Dp2Ag1_phast,433 mzDy1Dp2Ag1_phast,458 successful est,554 intronEst,629 such netAnoGam1,350 netDp2,350 netDroYak1,350 sufficient genomicSuperDups,69 mzDy1Dp2Ag1_phast,194 suggestions refGene,52 suppl augustusGene,336 twinscan,175 symbols mzDy1Dp2Ag1_phast,165 symp chainAnoGam1,488 chainDp2,468 chainDroYak1,468 mzDy1Dp2Ag1_phast,816 syn netAnoGam1,207 netDp2,207 netDroYak1,207 syntenic anophelesEcores,60 netAnoGam1,357 netDp2,357 netDroYak1,357 syntenically augustusGene,297 system chainAnoGam1,38 chainDp2,38 chainDroYak1,38 miRNA,342 systematic flyreg,30 flyreg,108 systems chainAnoGam1,48 chainDp2,48 chainDroYak1,48 t refGene,362 t-100-25-9091 chainAnoGam1,384 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 tags est,22 intronEst,23 tail est,465 intronEst,540 taken est,436 intronEst,511 refGene,22 xenoRefGene,26 takes twinscan,29 tandem blatFugu,194 microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 targets miRNA,252 task est,164 intronEst,239 mrna,110 tatusova refGene,361 tblastn blastHg16KG,9 blastHg16KG,18 blastHg16KG,80 blastHg16KG,141 techniques est,530 intronEst,605 temperature augustusGene,141 ten rmsk,119 tend microsat,37 tendency mzDy1Dp2Ag1_phast,437 term est,171 intronEst,246 mrna,117 terminal rmsk,138 terms est,215 intronEst,290 mrna,161 tetraodon anophelesEcores,219 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 miRNA,107 mrna,124 mrna,164 mrna,204 than blastHg16KG,109 chainAnoGam1,43 chainDp2,43 chainDroYak1,43 est,272 est,537 gcPercent,42 genomicSuperDups,57 genomicSuperDups,64 intronEst,347 intronEst,612 mrna,218 netAnoGam1,196 netDp2,196 netDroYak1,196 pscreen,121 refGene,274 rmsk,237 xenoRefGene,23 xenoRefGene,226 thank cytoBand,36 thanks anophelesEcores,127 augustusGene,248 bdgpGene,23 bdgpNonCoding,23 flyreg,80 flyreg,130 genscan,170 pscreen,162 rmsk,285 twinscan,139 that blastHg16KG,66 blastHg16KG,119 chainAnoGam1,39 chainAnoGam1,110 chainAnoGam1,136 chainAnoGam1,286 chainDp2,39 chainDp2,101 chainDp2,127 chainDp2,277 chainDroYak1,39 chainDroYak1,101 chainDroYak1,127 chainDroYak1,277 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,620 est,641 gap,45 genomicSuperDups,67 genscan,141 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,695 intronEst,716 miRNA,91 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 mzDy1Dp2Ag1_phast,336 mzDy1Dp2Ag1_phast,399 mzDy1Dp2Ag1_phast,463 netAnoGam1,82 netAnoGam1,104 netAnoGam1,320 netAnoGam1,331 netDp2,82 netDp2,104 netDp2,320 netDp2,331 netDroYak1,82 netDroYak1,104 netDroYak1,320 netDroYak1,331 pscreen,80 pscreen,87 refGene,196 rmsk,42 rmsk,231 rmsk,239 twinscan,27 xenoRefGene,148 the anophelesEcores,26 anophelesEcores,69 anophelesEcores,73 anophelesEcores,77 anophelesEcores,82 anophelesEcores,97 anophelesEcores,102 anophelesEcores,110 anophelesEcores,118 anophelesEcores,135 anophelesEcores,161 augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastHg16KG,21 blastHg16KG,24 blastHg16KG,31 blastHg16KG,38 blastHg16KG,42 blastHg16KG,50 blastHg16KG,54 blastHg16KG,62 blastHg16KG,74 blastHg16KG,79 blastHg16KG,83 blastHg16KG,101 blastHg16KG,112 blastHg16KG,124 blastHg16KG,132 blastHg16KG,145 blastHg16KG,186 blatFugu,15 blatFugu,25 blatFugu,32 blatFugu,37 blatFugu,70 blatFugu,90 blatFugu,99 blatFugu,109 blatFugu,113 blatFugu,116 blatFugu,123 blatFugu,125 blatFugu,129 blatFugu,132 blatFugu,138 blatFugu,156 blatFugu,161 blatFugu,165 blatFugu,185 blatFugu,201 blatFugu,205 blatFugu,213 blatFugu,226 chainAnoGam1,30 chainAnoGam1,79 chainAnoGam1,85 chainAnoGam1,88 chainAnoGam1,101 chainAnoGam1,118 chainAnoGam1,126 chainAnoGam1,173 chainAnoGam1,177 chainAnoGam1,203 chainAnoGam1,209 chainAnoGam1,214 chainAnoGam1,222 chainAnoGam1,234 chainAnoGam1,249 chainAnoGam1,255 chainAnoGam1,258 chainAnoGam1,273 chainAnoGam1,279 chainAnoGam1,283 chainAnoGam1,298 chainAnoGam1,314 chainAnoGam1,317 chainAnoGam1,349 chainAnoGam1,354 chainAnoGam1,363 chainAnoGam1,367 chainAnoGam1,374 chainAnoGam1,392 chainAnoGam1,434 chainAnoGam1,440 chainAnoGam1,458 chainAnoGam1,465 chainAnoGam1,512 chainDp2,30 chainDp2,79 chainDp2,92 chainDp2,109 chainDp2,117 chainDp2,164 chainDp2,168 chainDp2,194 chainDp2,200 chainDp2,205 chainDp2,213 chainDp2,225 chainDp2,240 chainDp2,246 chainDp2,249 chainDp2,264 chainDp2,270 chainDp2,274 chainDp2,289 chainDp2,305 chainDp2,308 chainDp2,340 chainDp2,345 chainDp2,354 chainDp2,358 chainDp2,372 chainDp2,414 chainDp2,420 chainDp2,438 chainDp2,445 chainDp2,492 chainDroYak1,30 chainDroYak1,79 chainDroYak1,92 chainDroYak1,109 chainDroYak1,117 chainDroYak1,164 chainDroYak1,168 chainDroYak1,194 chainDroYak1,200 chainDroYak1,205 chainDroYak1,213 chainDroYak1,225 chainDroYak1,240 chainDroYak1,246 chainDroYak1,249 chainDroYak1,264 chainDroYak1,270 chainDroYak1,274 chainDroYak1,289 chainDroYak1,305 chainDroYak1,308 chainDroYak1,340 chainDroYak1,345 chainDroYak1,354 chainDroYak1,358 chainDroYak1,372 chainDroYak1,414 chainDroYak1,420 chainDroYak1,438 chainDroYak1,445 chainDroYak1,492 cytoBand,18 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,424 est,438 est,452 est,463 est,469 est,479 est,483 est,494 est,498 est,505 est,514 est,518 est,528 est,548 est,574 est,580 est,615 est,621 est,653 est,656 est,672 est,681 est,702 est,740 flyreg,29 flyreg,42 flyreg,72 flyreg,86 flyreg,117 flyreg,136 gap,19 gap,33 gap,40 gcPercent,13 gcPercent,18 genomicSuperDups,24 genomicSuperDups,27 genomicSuperDups,85 genomicSuperDups,92 genomicSuperDups,136 genomicSuperDups,168 genomicSuperDups,180 genomicSuperDups,186 genomicSuperDups,189 genomicSuperDups,204 genomicSuperDups,250 genomicSuperDups,279 genomicSuperDups,307 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,499 intronEst,513 intronEst,527 intronEst,538 intronEst,544 intronEst,554 intronEst,558 intronEst,569 intronEst,573 intronEst,580 intronEst,589 intronEst,593 intronEst,603 intronEst,623 intronEst,649 intronEst,655 intronEst,690 intronEst,696 intronEst,728 intronEst,731 intronEst,747 intronEst,756 intronEst,777 intronEst,815 miRNA,10 miRNA,29 miRNA,34 miRNA,44 miRNA,53 miRNA,78 miRNA,83 miRNA,106 miRNA,110 miRNA,113 miRNA,123 miRNA,129 miRNA,133 miRNA,136 miRNA,160 miRNA,174 miRNA,222 miRNA,272 miRNA,310 miRNA,365 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,353 mrna,356 mrna,367 mrna,370 mrna,386 mrna,395 mrna,401 mrna,414 mrna,452 mzDy1Dp2Ag1_phast,40 mzDy1Dp2Ag1_phast,79 mzDy1Dp2Ag1_phast,102 mzDy1Dp2Ag1_phast,106 mzDy1Dp2Ag1_phast,120 mzDy1Dp2Ag1_phast,123 mzDy1Dp2Ag1_phast,128 mzDy1Dp2Ag1_phast,133 mzDy1Dp2Ag1_phast,143 mzDy1Dp2Ag1_phast,150 mzDy1Dp2Ag1_phast,153 mzDy1Dp2Ag1_phast,156 mzDy1Dp2Ag1_phast,162 mzDy1Dp2Ag1_phast,167 mzDy1Dp2Ag1_phast,171 mzDy1Dp2Ag1_phast,176 mzDy1Dp2Ag1_phast,186 mzDy1Dp2Ag1_phast,197 mzDy1Dp2Ag1_phast,199 mzDy1Dp2Ag1_phast,202 mzDy1Dp2Ag1_phast,210 mzDy1Dp2Ag1_phast,233 mzDy1Dp2Ag1_phast,241 mzDy1Dp2Ag1_phast,252 mzDy1Dp2Ag1_phast,269 mzDy1Dp2Ag1_phast,273 mzDy1Dp2Ag1_phast,282 mzDy1Dp2Ag1_phast,310 mzDy1Dp2Ag1_phast,321 mzDy1Dp2Ag1_phast,339 mzDy1Dp2Ag1_phast,351 mzDy1Dp2Ag1_phast,360 mzDy1Dp2Ag1_phast,389 mzDy1Dp2Ag1_phast,396 mzDy1Dp2Ag1_phast,400 mzDy1Dp2Ag1_phast,407 mzDy1Dp2Ag1_phast,411 mzDy1Dp2Ag1_phast,416 mzDy1Dp2Ag1_phast,422 mzDy1Dp2Ag1_phast,431 mzDy1Dp2Ag1_phast,445 mzDy1Dp2Ag1_phast,454 mzDy1Dp2Ag1_phast,516 mzDy1Dp2Ag1_phast,528 mzDy1Dp2Ag1_phast,539 mzDy1Dp2Ag1_phast,552 mzDy1Dp2Ag1_phast,567 mzDy1Dp2Ag1_phast,703 mzDy1Dp2Ag1_phast,738 mzDy1Dp2Ag1_phast,788 netAnoGam1,19 netAnoGam1,30 netAnoGam1,46 netAnoGam1,56 netAnoGam1,72 netAnoGam1,78 netAnoGam1,92 netAnoGam1,110 netAnoGam1,127 netAnoGam1,130 netAnoGam1,135 netAnoGam1,148 netAnoGam1,161 netAnoGam1,163 netAnoGam1,170 netAnoGam1,173 netAnoGam1,180 netAnoGam1,186 netAnoGam1,199 netAnoGam1,210 netAnoGam1,214 netAnoGam1,217 netAnoGam1,225 netAnoGam1,229 netAnoGam1,235 netAnoGam1,246 netAnoGam1,249 netAnoGam1,260 netAnoGam1,264 netAnoGam1,272 netAnoGam1,276 netAnoGam1,280 netAnoGam1,288 netAnoGam1,333 netAnoGam1,343 netAnoGam1,362 netAnoGam1,365 netAnoGam1,377 netAnoGam1,401 netAnoGam1,406 netAnoGam1,415 netAnoGam1,457 netAnoGam1,464 netAnoGam1,493 netDp2,19 netDp2,30 netDp2,46 netDp2,56 netDp2,72 netDp2,78 netDp2,92 netDp2,110 netDp2,127 netDp2,130 netDp2,135 netDp2,148 netDp2,161 netDp2,163 netDp2,170 netDp2,173 netDp2,180 netDp2,186 netDp2,199 netDp2,210 netDp2,214 netDp2,217 netDp2,225 netDp2,229 netDp2,235 netDp2,246 netDp2,249 netDp2,260 netDp2,264 netDp2,272 netDp2,276 netDp2,280 netDp2,288 netDp2,333 netDp2,343 netDp2,362 netDp2,365 netDp2,377 netDp2,401 netDp2,406 netDp2,414 netDp2,420 netDp2,430 netDp2,439 netDp2,481 netDp2,488 netDp2,517 netDroYak1,19 netDroYak1,30 netDroYak1,46 netDroYak1,56 netDroYak1,72 netDroYak1,78 netDroYak1,92 netDroYak1,110 netDroYak1,127 netDroYak1,130 netDroYak1,135 netDroYak1,148 netDroYak1,161 netDroYak1,163 netDroYak1,170 netDroYak1,173 netDroYak1,180 netDroYak1,186 netDroYak1,199 netDroYak1,210 netDroYak1,214 netDroYak1,217 netDroYak1,225 netDroYak1,229 netDroYak1,235 netDroYak1,246 netDroYak1,249 netDroYak1,260 netDroYak1,264 netDroYak1,272 netDroYak1,276 netDroYak1,280 netDroYak1,288 netDroYak1,333 netDroYak1,343 netDroYak1,362 netDroYak1,365 netDroYak1,377 netDroYak1,401 netDroYak1,406 netDroYak1,415 netDroYak1,457 netDroYak1,464 netDroYak1,493 pscreen,17 pscreen,26 pscreen,30 pscreen,38 pscreen,42 pscreen,52 pscreen,55 pscreen,59 pscreen,62 pscreen,74 pscreen,78 pscreen,97 pscreen,104 pscreen,109 pscreen,114 pscreen,134 pscreen,143 pscreen,157 pscreen,164 pscreen,175 pscreen,185 pscreen,210 refGene,10 refGene,24 refGene,31 refGene,41 refGene,71 refGene,78 refGene,82 refGene,86 refGene,97 refGene,112 refGene,115 refGene,118 refGene,127 refGene,131 refGene,134 refGene,141 refGene,144 refGene,159 refGene,165 refGene,170 refGene,175 refGene,183 refGene,211 refGene,216 refGene,237 refGene,250 refGene,262 refGene,286 refGene,289 refGene,305 refGene,314 refGene,337 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,102 rmsk,174 rmsk,180 rmsk,184 rmsk,199 rmsk,201 rmsk,206 rmsk,208 rmsk,214 rmsk,219 rmsk,244 rmsk,250 rmsk,279 rmsk,293 simpleRepeat,60 twinscan,15 twinscan,58 twinscan,65 twinscan,70 twinscan,81 twinscan,104 twinscan,111 twinscan,122 twinscan,134 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,189 xenoRefGene,202 xenoRefGene,209 xenoRefGene,214 xenoRefGene,238 xenoRefGene,241 xenoRefGene,257 xenoRefGene,266 xenoRefGene,289 xenoRefGene,297 them mzDy1Dp2Ag1_phast,141 netAnoGam1,295 netDp2,295 netDroYak1,295 rmsk,277 then chainAnoGam1,360 chainDp2,351 chainDroYak1,351 genomicSuperDups,183 mzDy1Dp2Ag1_phast,249 mzDy1Dp2Ag1_phast,315 netAnoGam1,284 netAnoGam1,369 netDp2,284 netDp2,369 netDroYak1,284 netDroYak1,369 there blatFugu,150 est,583 intronEst,658 mzDy1Dp2Ag1_phast,192 these augustusGene,95 augustusGene,190 bdgpGene,28 bdgpNonCoding,28 blatFugu,220 chainAnoGam1,62 chainAnoGam1,372 chainDp2,62 chainDp2,363 chainDroYak1,62 chainDroYak1,363 est,551 genomicSuperDups,140 genomicSuperDups,165 genomicSuperDups,233 intronEst,626 miRNA,234 microsat,24 mzDy1Dp2Ag1_phast,413 netAnoGam1,97 netDp2,97 netDroYak1,97 pscreen,171 rmsk,205 rmsk,228 rmsk,232 simpleRepeat,33 twinscan,154 they chainAnoGam1,245 chainDp2,236 chainDroYak1,236 thick miRNA,27 thin anophelesEcores,47 thinner miRNA,40 this anophelesEcores,18 augustusGene,13 augustusGene,106 augustusGene,224 bdgpGene,12 bdgpNonCoding,12 blastHg16KG,15 blastHg16KG,192 blatFugu,79 blatFugu,103 blatFugu,231 chainAnoGam1,16 chainAnoGam1,143 chainAnoGam1,398 chainDp2,16 chainDp2,134 chainDp2,378 chainDroYak1,16 chainDroYak1,134 chainDroYak1,378 cytoBand,9 cytoBand,44 est,13 est,50 est,115 est,142 est,367 est,404 est,556 est,592 est,605 est,687 est,690 flyreg,12 flyreg,77 gap,8 gcPercent,58 genomicSuperDups,14 genomicSuperDups,130 genomicSuperDups,215 genscan,11 genscan,65 genscan,128 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,631 intronEst,667 intronEst,680 intronEst,762 intronEst,765 miRNA,179 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 mzDy1Dp2Ag1_phast,13 mzDy1Dp2Ag1_phast,47 mzDy1Dp2Ag1_phast,76 mzDy1Dp2Ag1_phast,137 mzDy1Dp2Ag1_phast,254 mzDy1Dp2Ag1_phast,353 mzDy1Dp2Ag1_phast,545 netAnoGam1,16 netAnoGam1,52 netAnoGam1,84 netAnoGam1,310 netDp2,16 netDp2,52 netDp2,84 netDp2,310 netDroYak1,16 netDroYak1,52 netDroYak1,84 netDroYak1,310 pscreen,14 refGene,34 refGene,68 refGene,106 refGene,122 refGene,188 refGene,229 refGene,254 refGene,320 rmsk,10 rmsk,51 rmsk,114 rmsk,301 simpleRepeat,12 simpleRepeat,31 twinscan,55 twinscan,119 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,181 xenoRefGene,206 xenoRefGene,272 those est,360 est,393 intronEst,435 intronEst,468 miRNA,51 miRNA,89 microsat,62 mrna,306 mzDy1Dp2Ag1_phast,181 refGene,268 rmsk,238 xenoRefGene,220 thousands chainAnoGam1,220 chainDp2,211 chainDroYak1,211 threaded mzDy1Dp2Ag1_phast,789 three mzDy1Dp2Ag1_phast,22 threshold chainAnoGam1,389 chainDp2,369 chainDroYak1,369 through refGene,111 refGene,140 rmsk,268 xenoRefGene,90 tier anophelesEcores,205 time netAnoGam1,293 netDp2,293 netDroYak1,293 tin genomicSuperDups,244 tique miRNA,212 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,325 mrna,196 to anophelesEcores,39 anophelesEcores,50 anophelesEcores,86 anophelesEcores,128 augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 bdgpGene,24 bdgpNonCoding,24 blastHg16KG,57 blastHg16KG,190 blatFugu,180 chainAnoGam1,29 chainAnoGam1,114 chainAnoGam1,185 chainAnoGam1,197 chainAnoGam1,236 chainAnoGam1,247 chainAnoGam1,252 chainAnoGam1,264 chainAnoGam1,270 chainAnoGam1,293 chainAnoGam1,365 chainDp2,29 chainDp2,105 chainDp2,176 chainDp2,188 chainDp2,227 chainDp2,238 chainDp2,243 chainDp2,255 chainDp2,261 chainDp2,284 chainDp2,356 chainDroYak1,29 chainDroYak1,105 chainDroYak1,176 chainDroYak1,188 chainDroYak1,227 chainDroYak1,238 chainDroYak1,243 chainDroYak1,255 chainDroYak1,261 chainDroYak1,284 chainDroYak1,356 cytoBand,17 cytoBand,35 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,409 est,478 est,543 est,603 est,701 flyreg,26 flyreg,81 flyreg,131 genomicSuperDups,33 genomicSuperDups,39 genomicSuperDups,46 genomicSuperDups,53 genomicSuperDups,81 genomicSuperDups,104 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,484 intronEst,553 intronEst,618 intronEst,678 intronEst,776 miRNA,86 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,413 mzDy1Dp2Ag1_phast,45 mzDy1Dp2Ag1_phast,101 mzDy1Dp2Ag1_phast,149 mzDy1Dp2Ag1_phast,185 mzDy1Dp2Ag1_phast,228 mzDy1Dp2Ag1_phast,243 mzDy1Dp2Ag1_phast,264 mzDy1Dp2Ag1_phast,359 mzDy1Dp2Ag1_phast,441 mzDy1Dp2Ag1_phast,448 mzDy1Dp2Ag1_phast,612 netAnoGam1,143 netAnoGam1,157 netAnoGam1,241 netAnoGam1,286 netAnoGam1,298 netAnoGam1,338 netAnoGam1,361 netAnoGam1,371 netDp2,143 netDp2,157 netDp2,241 netDp2,286 netDp2,298 netDp2,338 netDp2,361 netDp2,371 netDroYak1,143 netDroYak1,157 netDroYak1,241 netDroYak1,286 netDroYak1,298 netDroYak1,338 netDroYak1,361 netDroYak1,371 pscreen,58 pscreen,103 pscreen,131 pscreen,163 refGene,50 refGene,130 refGene,163 refGene,199 refGene,206 refGene,247 rmsk,118 rmsk,226 rmsk,274 rmsk,286 rmsk,299 simpleRepeat,81 twinscan,24 twinscan,34 twinscan,85 twinscan,95 twinscan,140 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,199 together blastHg16KG,90 chainAnoGam1,94 chainDp2,85 chainDroYak1,85 tolerate chainAnoGam1,52 chainDp2,52 chainDroYak1,52 tool blastHg16KG,148 blastHg16KG,170 blatFugu,240 est,743 intronEst,818 miRNA,368 mrna,455 refGene,347 xenoRefGene,300 tools rmsk,294 top miRNA,111 netAnoGam1,198 netDp2,198 netDroYak1,198 refGene,116 xenoRefGene,95 top-level netAnoGam1,73 netAnoGam1,93 netDp2,73 netDp2,93 netDroYak1,73 netDroYak1,93 total blatFugu,94 genomicSuperDups,93 totaling blatFugu,85 toulouse miRNA,199 miRNA,216 track anophelesEcores,19 augustusGene,14 augustusGene,107 bdgpGene,13 bdgpNonCoding,13 blastHg16KG,16 blastHg16KG,35 blastHg16KG,46 blastHg16KG,193 blatFugu,104 chainAnoGam1,17 chainAnoGam1,90 chainAnoGam1,266 chainAnoGam1,399 chainDp2,17 chainDp2,81 chainDp2,257 chainDp2,379 chainDroYak1,17 chainDroYak1,81 chainDroYak1,257 chainDroYak1,379 cytoBand,10 est,14 est,51 est,116 est,141 est,153 est,368 est,606 est,688 est,691 flyreg,13 gap,9 gcPercent,16 gcPercent,59 genomicSuperDups,15 genomicSuperDups,86 genomicSuperDups,131 genscan,12 genscan,66 genscan,76 genscan,87 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,681 intronEst,763 intronEst,766 miRNA,12 miRNA,114 miRNA,180 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,403 mzDy1Dp2Ag1_phast,14 mzDy1Dp2Ag1_phast,77 mzDy1Dp2Ag1_phast,124 mzDy1Dp2Ag1_phast,154 mzDy1Dp2Ag1_phast,255 mzDy1Dp2Ag1_phast,546 mzDy1Dp2Ag1_phast,591 netAnoGam1,17 netDp2,17 netDroYak1,17 pscreen,15 refGene,13 refGene,35 refGene,69 refGene,107 refGene,119 refGene,135 refGene,145 refGene,189 refGene,218 refGene,321 rmsk,11 rmsk,52 rmsk,115 rmsk,302 simpleRepeat,13 twinscan,56 twinscan,66 twinscan,77 twinscan,112 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,273 tracks augustusGene,41 est,59 genscan,56 genscan,74 intronEst,137 mrna,40 netAnoGam1,266 netDp2,266 netDroYak1,266 refGene,77 twinscan,64 xenoRefGene,56 traditional chainAnoGam1,44 chainDp2,44 chainDroYak1,44 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,420 intronEst,55 intronEst,495 transcript est,515 intronEst,590 transcriptase est,471 intronEst,546 transcription est,101 est,454 est,501 est,523 flyreg,112 intronEst,176 intronEst,529 intronEst,576 intronEst,598 transcriptional genscan,28 transcripts augustusGene,124 miRNA,36 refGene,376 translated blatFugu,9 blatFugu,120 blatFugu,134 blatFugu,172 translation augustusGene,57 translational genscan,29 transposable pscreen,21 transposon pscreen,216 transposons netAnoGam1,396 netDp2,396 netDroYak1,396 trask genomicSuperDups,297 treats mzDy1Dp2Ag1_phast,507 trends rmsk,317 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 triangular pscreen,35 trigger blatFugu,181 trimmed genomicSuperDups,193 trimming netAnoGam1,294 netDp2,294 netDroYak1,294 trna rmsk,161 true augustusGene,132 trust miRNA,224 tsang pscreen,198 turn chainAnoGam1,253 chainDp2,244 chainDroYak1,244 refGene,181 xenoRefGene,133 twice miRNA,76 twinscan twinscan,1 twinscan,2 twinscan,16 twinscan,28 twinscan,123 two anophelesEcores,42 blatFugu,107 blatFugu,139 blatFugu,176 miRNA,64 miRNA,79 netAnoGam1,402 netDp2,402 netDroYak1,402 two-state mzDy1Dp2Ag1_phast,375 type est,169 est,199 intronEst,244 intronEst,274 mrna,115 mrna,145 mzDy1Dp2Ag1_phast,332 types augustusGene,89 est,248 intronEst,323 mrna,194 netAnoGam1,194 netDp2,194 netDroYak1,194 typically est,33 est,423 gcPercent,52 intronEst,44 intronEst,498 u chainAnoGam1,521 chainDp2,501 chainDroYak1,501 mzDy1Dp2Ag1_phast,747 netAnoGam1,502 netDp2,526 netDroYak1,502 ucsc anophelesEcores,119 blatFugu,214 est,695 gcPercent,63 intronEst,770 mrna,407 mzDy1Dp2Ag1_phast,550 mzDy1Dp2Ag1_phast,582 mzDy1Dp2Ag1_phast,598 refGene,325 rmsk,211 xenoRefGene,277 uk miRNA,228 undergone refGene,90 xenoRefGene,69 underlies genscan,142 underlying refGene,33 xenoRefGene,37 underneath netAnoGam1,330 netDp2,330 netDroYak1,330 undesirably mzDy1Dp2Ag1_phast,520 ungapped netAnoGam1,133 netDp2,133 netDroYak1,133 uniform miRNA,341 universit miRNA,195 university chainAnoGam1,407 chainAnoGam1,441 chainDp2,387 chainDp2,421 chainDroYak1,387 chainDroYak1,421 genomicSuperDups,251 mzDy1Dp2Ag1_phast,589 netAnoGam1,416 netAnoGam1,430 netDp2,440 netDp2,454 netDroYak1,416 netDroYak1,430 twinscan,149 unknown rmsk,173 unlike mzDy1Dp2Ag1_phast,464 unnormalized miRNA,95 unprocessed chainAnoGam1,200 chainDp2,191 chainDroYak1,191 est,566 intronEst,641 unsequenced chainAnoGam1,157 chainDp2,148 chainDroYak1,148 unspliced est,8 est,595 intronEst,117 intronEst,670 up blastHg16KG,68 rmsk,117 update est,722 intronEst,797 mrna,434 rmsk,82 rmsk,94 rmsk,307 updated refGene,37 xenoRefGene,41 us blatFugu,26 use blatFugu,229 est,166 intronEst,241 miRNA,232 mrna,112 used anophelesEcores,100 anophelesEcores,116 augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastHg16KG,189 blatFugu,211 chainAnoGam1,378 est,123 est,264 est,323 est,534 flyreg,90 genomicSuperDups,32 genscan,159 intronEst,198 intronEst,339 intronEst,398 intronEst,609 mrna,69 mrna,210 mrna,269 mzDy1Dp2Ag1_phast,44 mzDy1Dp2Ag1_phast,461 netAnoGam1,50 netAnoGam1,285 netAnoGam1,337 netAnoGam1,370 netDp2,50 netDp2,285 netDp2,337 netDp2,370 netDroYak1,50 netDroYak1,285 netDroYak1,337 netDroYak1,370 rmsk,213 rmsk,258 rmsk,298 useful microsat,20 netAnoGam1,36 netAnoGam1,167 netDp2,36 netDp2,167 netDroYak1,36 netDroYak1,167 user est,382 intronEst,457 mrna,328 users refGene,198 xenoRefGene,150 uses mzDy1Dp2Ag1_phast,373 rmsk,79 using anophelesEcores,169 anophelesEcores,218 augustusGene,294 blastHg16KG,53 blastHg16KG,78 blastHg16KG,91 chainAnoGam1,34 chainAnoGam1,313 chainDp2,34 chainDp2,304 chainDroYak1,34 chainDroYak1,304 est,617 intronEst,692 miRNA,131 microsat,90 mrna,355 mzDy1Dp2Ag1_phast,115 mzDy1Dp2Ag1_phast,293 mzDy1Dp2Ag1_phast,551 netAnoGam1,259 netDp2,259 netDroYak1,259 pscreen,182 refGene,266 rmsk,15 rmsk,249 twinscan,5 xenoRefGene,218 usually est,40 intronEst,51 utilities blastHg16KG,188 v miRNA,319 v.16.2.1 anophelesEcores,125 v.16.3a.1 anophelesEcores,107 v.3.0 blatFugu,17 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 validate refGene,201 xenoRefGene,153 validation genscan,107 twinscan,97 value est,274 intronEst,349 mrna,220 mzDy1Dp2Ag1_phast,390 van miRNA,242 variation genomicSuperDups,10 microsat,7 mzDy1Dp2Ag1_phast,613 rmsk,6 simpleRepeat,8 varies gap,49 variety mzDy1Dp2Ag1_phast,261 vb chainAnoGam1,479 chainDp2,459 chainDroYak1,459 mzDy1Dp2Ag1_phast,807 vector est,431 intronEst,506 version augustusGene,23 augustusGene,263 bdgpGene,20 bdgpNonCoding,20 flyreg,21 rmsk,58 versions anophelesEcores,99 augustusGene,279 rmsk,217 rmsk,233 vertebrate mzDy1Dp2Ag1_phast,656 vertebrates augustusGene,209 very est,638 intronEst,713 via refGene,126 view est,210 intronEst,285 mrna,156 mzDy1Dp2Ag1_phast,229 netAnoGam1,144 netDp2,144 netDroYak1,144 viewed est,599 intronEst,674 visit refGene,40 w blastHg16KG,159 blastHg16KG,161 chainAnoGam1,481 chainAnoGam1,501 chainAnoGam1,549 chainDp2,461 chainDp2,481 chainDp2,529 chainDroYak1,461 chainDroYak1,481 chainDroYak1,529 mzDy1Dp2Ag1_phast,727 mzDy1Dp2Ag1_phast,809 mzDy1Dp2Ag1_phast,837 netAnoGam1,482 netAnoGam1,530 netDp2,506 netDp2,554 netDroYak1,482 netDroYak1,530 waack augustusGene,318 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastHg16KG,181 blatFugu,22 blatFugu,34 blatFugu,189 blatFugu,210 chainAnoGam1,359 chainAnoGam1,377 chainAnoGam1,402 chainAnoGam1,437 chainDp2,350 chainDp2,382 chainDp2,417 chainDroYak1,350 chainDroYak1,382 chainDroYak1,417 est,660 est,692 gcPercent,60 genomicSuperDups,114 intronEst,735 intronEst,767 miRNA,181 microsat,108 mrna,374 mrna,404 mzDy1Dp2Ag1_phast,404 mzDy1Dp2Ag1_phast,460 mzDy1Dp2Ag1_phast,547 netAnoGam1,283 netAnoGam1,328 netAnoGam1,336 netAnoGam1,356 netAnoGam1,368 netAnoGam1,393 netAnoGam1,425 netDp2,283 netDp2,328 netDp2,336 netDp2,356 netDp2,368 netDp2,393 netDp2,449 netDroYak1,283 netDroYak1,328 netDroYak1,336 netDroYak1,356 netDroYak1,368 netDroYak1,393 netDroYak1,425 refGene,293 refGene,322 rmsk,12 simpleRepeat,68 xenoRefGene,245 xenoRefGene,274 washington genomicSuperDups,253 twinscan,148 way mzDy1Dp2Ag1_phast,352 ways mzDy1Dp2Ag1_phast,263 mzDy1Dp2Ag1_phast,536 we cytoBand,32 mzDy1Dp2Ag1_phast,530 web twinscan,43 webb chainAnoGam1,416 chainAnoGam1,453 chainDp2,396 chainDp2,433 chainDroYak1,396 chainDroYak1,433 mzDy1Dp2Ag1_phast,564 netAnoGam1,439 netDp2,463 netDroYak1,439 weber miRNA,170 miRNA,185 miRNA,289 website blatFugu,209 weekly refGene,38 xenoRefGene,42 weissenbach anophelesEcores,156 well augustusGene,78 est,503 est,526 genscan,36 intronEst,578 intronEst,601 mzDy1Dp2Ag1_phast,87 rmsk,54 wellcome miRNA,223 were anophelesEcores,66 anophelesEcores,104 augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastHg16KG,47 blastHg16KG,71 blastHg16KG,88 blastHg16KG,115 blastHg16KG,137 blastHg16KG,194 blatFugu,167 blatFugu,222 chainAnoGam1,304 chainAnoGam1,320 chainAnoGam1,390 chainAnoGam1,425 chainAnoGam1,467 chainDp2,295 chainDp2,311 chainDp2,370 chainDp2,405 chainDp2,447 chainDroYak1,295 chainDroYak1,311 chainDroYak1,370 chainDroYak1,405 chainDroYak1,447 est,553 est,612 genomicSuperDups,158 genomicSuperDups,182 genomicSuperDups,197 genomicSuperDups,235 intronEst,628 intronEst,687 miRNA,126 miRNA,139 miRNA,144 mrna,350 mrna,398 mzDy1Dp2Ag1_phast,43 mzDy1Dp2Ag1_phast,290 mzDy1Dp2Ag1_phast,314 netAnoGam1,254 netAnoGam1,412 netAnoGam1,448 netAnoGam1,466 netDp2,254 netDp2,411 netDp2,436 netDp2,472 netDp2,490 netDroYak1,254 netDroYak1,412 netDroYak1,448 netDroYak1,466 refGene,259 refGene,276 refGene,317 xenoRefGene,211 xenoRefGene,228 xenoRefGene,269 wgac genomicSuperDups,221 wheeler est,719 intronEst,794 mrna,431 when augustusGene,188 augustusGene,238 est,146 est,156 est,645 flyreg,54 intronEst,35 intronEst,221 intronEst,231 intronEst,720 miRNA,59 miRNA,230 mrna,92 mrna,102 mrna,359 mzDy1Dp2Ag1_phast,147 netAnoGam1,95 netDp2,95 netDroYak1,95 pscreen,89 pscreen,181 refGene,278 xenoRefGene,230 where chainAnoGam1,164 chainDp2,155 chainDroYak1,155 pscreen,108 whether netAnoGam1,352 netDp2,352 netDroYak1,352 which augustusGene,159 augustusGene,227 chainAnoGam1,243 chainAnoGam1,324 chainDp2,234 chainDp2,315 chainDroYak1,234 chainDroYak1,315 est,106 est,233 est,460 est,485 est,632 intronEst,181 intronEst,308 intronEst,535 intronEst,560 intronEst,707 mrna,179 mzDy1Dp2Ag1_phast,513 netAnoGam1,317 netDp2,317 netDroYak1,317 pscreen,46 rmsk,21 rmsk,64 rmsk,129 rmsk,142 rmsk,167 simpleRepeat,27 while chainAnoGam1,188 chainDp2,179 chainDroYak1,179 whole blatFugu,18 netAnoGam1,152 netDp2,152 netDroYak1,152 whole-genome genomicSuperDups,222 whose blatFugu,119 wiggle mzDy1Dp2Ag1_phast,590 wildcards est,260 intronEst,335 mrna,206 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 wincker anophelesEcores,199 window gcPercent,32 mzDy1Dp2Ag1_phast,475 windows gcPercent,8 gcPercent,33 gcPercent,43 wish est,235 intronEst,310 mrna,181 refGene,246 xenoRefGene,198 with augustusGene,127 augustusGene,322 blastHg16KG,49 blastHg16KG,73 blatFugu,36 blatFugu,69 blatFugu,169 blatFugu,191 chainAnoGam1,179 chainAnoGam1,190 chainAnoGam1,306 chainAnoGam1,418 chainAnoGam1,450 chainAnoGam1,552 chainDp2,170 chainDp2,181 chainDp2,297 chainDp2,398 chainDp2,430 chainDp2,532 chainDroYak1,170 chainDroYak1,181 chainDroYak1,297 chainDroYak1,398 chainDroYak1,430 chainDroYak1,532 est,105 est,462 est,600 est,637 est,680 gcPercent,34 gcPercent,44 gcPercent,54 intronEst,180 intronEst,537 intronEst,675 intronEst,712 intronEst,755 miRNA,77 microsat,69 microsat,76 mrna,394 mzDy1Dp2Ag1_phast,296 mzDy1Dp2Ag1_phast,377 mzDy1Dp2Ag1_phast,787 mzDy1Dp2Ag1_phast,840 netAnoGam1,271 netAnoGam1,395 netAnoGam1,441 netAnoGam1,533 netDp2,271 netDp2,395 netDp2,465 netDp2,557 netDroYak1,271 netDroYak1,395 netDroYak1,441 netDroYak1,533 pscreen,219 refGene,269 refGene,313 rmsk,195 simpleRepeat,52 xenoRefGene,221 xenoRefGene,265 within est,139 est,513 est,669 genomicSuperDups,23 genomicSuperDups,306 intronEst,214 intronEst,588 intronEst,744 mrna,85 mrna,383 refGene,105 refGene,302 simpleRepeat,37 xenoRefGene,84 xenoRefGene,254 wj blatFugu,236 chainAnoGam1,495 chainAnoGam1,537 chainDp2,475 chainDp2,517 chainDroYak1,475 chainDroYak1,517 est,738 intronEst,813 miRNA,363 mrna,450 mzDy1Dp2Ag1_phast,721 mzDy1Dp2Ag1_phast,764 mzDy1Dp2Ag1_phast,825 netAnoGam1,476 netAnoGam1,518 netDp2,500 netDp2,542 netDroYak1,476 netDroYak1,518 refGene,343 xenoRefGene,295 work flyreg,93 worldwide est,709 intronEst,784 mrna,421 refGene,333 xenoRefGene,285 worm mzDy1Dp2Ag1_phast,658 would cytoBand,33 written blastHg16KG,182 blastHg16KG,195 genscan,19 microsat,109 simpleRepeat,69 wugsc chainDroYak1,8 chainDroYak1,26 netDroYak1,8 netDroYak1,59 x miRNA,329 xinwei genomicSuperDups,240 y pscreen,195 yakuba chainDroYak1,2 chainDroYak1,5 chainDroYak1,22 chainDroYak1,57 chainDroYak1,111 chainDroYak1,291 chainDroYak1,323 mzDy1Dp2Ag1_phast,58 mzDy1Dp2Ag1_phast,93 mzDy1Dp2Ag1_phast,299 netDroYak1,2 netDroYak1,5 netDroYak1,22 netDroYak1,48 yang mzDy1Dp2Ag1_phast,366 mzDy1Dp2Ag1_phast,696 yap chainAnoGam1,478 chainDp2,458 chainDroYak1,458 mzDy1Dp2Ag1_phast,806 yavor genomicSuperDups,293 yeast mzDy1Dp2Ag1_phast,660 yellow genomicSuperDups,48 york mzDy1Dp2Ag1_phast,691 you est,234 intronEst,309 mrna,180 refGene,245 xenoRefGene,197 yves miRNA,201 z chainAnoGam1,541 chainDp2,521 chainDroYak1,521 genomicSuperDups,258 mzDy1Dp2Ag1_phast,697 mzDy1Dp2Ag1_phast,829 netAnoGam1,522 netDp2,546 netDroYak1,522 zebrafish augustusGene,202 augustusGene,278 zhang chainAnoGam1,414 chainAnoGam1,540 chainDp2,394 chainDp2,520 chainDroYak1,394 chainDroYak1,520 mzDy1Dp2Ag1_phast,828 netAnoGam1,437 netAnoGam1,521 netDp2,461 netDp2,545 netDroYak1,437 netDroYak1,521 zheng chainAnoGam1,413 chainDp2,393 chainDroYak1,393 netAnoGam1,436 netDp2,460 netDroYak1,436 zoom mzDy1Dp2Ag1_phast,239 zoomed-in genscan,103 mzDy1Dp2Ag1_phast,148 twinscan,93