0 nestedRepeats,237 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refSeqComposite,1274 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 est,709 intronEst,790 mrna,425 transMapEnsemblV5,226 transMapEnsemblV5,361 transMapEstV5,195 transMapEstV5,330 transMapRefSeqV5,195 transMapRefSeqV5,330 transMapRnaV5,195 transMapRnaV5,330 transMapV5,301 transMapV5,436 xenoRefGene,264 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 est,669 intronEst,750 transMapV5,110 1 augustusGene,310 chainNetRn6,397 chainNetRn6,528 chainNetRn6,720 chainNetRn6,1119 chainRn6,394 chainRn6,525 chainRn6,717 chainRn6,1116 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 est,792 genscan,227 intronEst,876 mrna,509 netRn6,394 netRn6,525 netRn6,717 netRn6,1116 refSeqComposite,1817 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,387 1.0 transMapEnsemblV5,369 transMapEstV5,338 transMapRefSeqV5,338 transMapRnaV5,338 transMapV5,444 10 uniprot,1928 100 augustusGene,134 chainNetRn6,1087 chainRn6,1084 microsat,70 nestedRepeats,230 netRn6,1084 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 nestedRepeats,238 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,674 transMapEstV5,643 transMapRefSeqV5,643 transMapRnaV5,643 transMapV5,749 uniprot,1824 103-7 chainNetRn6,1120 chainRn6,1117 netRn6,1117 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainNetRn6,716 chainNetRn6,723 chainRn6,713 chainRn6,720 netRn6,713 netRn6,720 1100 chainNetRn6,737 chainNetRn6,749 chainRn6,734 chainRn6,746 netRn6,734 netRn6,746 111 chainNetRn6,718 chainNetRn6,724 chainRn6,715 chainRn6,721 netRn6,715 netRn6,721 11484-9 chainNetRn6,1089 chainRn6,1086 netRn6,1086 115-26 chainNetRn6,1051 chainRn6,1048 netRn6,1048 11752248 ensGene,205 11928468 chainNetRn6,1053 chainRn6,1050 netRn6,1050 11932250 est,816 intronEst,900 mrna,533 refSeqComposite,1747 xenoRefGene,317 12 est,812 intronEst,896 mrna,529 refSeqComposite,1743 transMapEnsemblV5,751 transMapEnsemblV5,817 transMapEstV5,720 transMapEstV5,786 transMapRefSeqV5,720 transMapRefSeqV5,786 transMapRnaV5,720 transMapRnaV5,786 transMapV5,826 transMapV5,892 xenoRefGene,313 12111 chainNetRn6,726 chainRn6,723 netRn6,723 12529312 chainNetRn6,1122 chainRn6,1119 netRn6,1119 127-163 genscan,206 13 chainNetRn6,1118 chainRn6,1115 netRn6,1115 134-41 windowmaskerSdust,112 1400 chainNetRn6,761 chainRn6,758 netRn6,758 14500911 chainNetRn6,1091 chainRn6,1088 netRn6,1088 14534192 augustusGene,340 14681350 est,798 intronEst,882 mrna,515 147 gap,138 15 microsat,30 microsat,79 microsat,130 refSeqComposite,1246 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,236 15108278 uniprot,2051 152111 chainNetRn6,729 chainRn6,726 netRn6,726 15600 chainNetRn6,740 chainNetRn6,752 chainRn6,737 chainRn6,749 netRn6,737 netRn6,749 15608248 refSeqComposite,1823 xenoRefGene,393 16 nestedRepeats,357 rmsk,380 16000 chainNetRn6,764 chainRn6,761 netRn6,761 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,750 transMapEstV5,719 transMapRefSeqV5,719 transMapRnaV5,719 transMapV5,825 1763-73 transMapEnsemblV5,752 transMapEstV5,721 transMapRefSeqV5,721 transMapRnaV5,721 transMapV5,827 17989246 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 18085818 transMapEnsemblV5,820 transMapEstV5,789 transMapRefSeqV5,789 transMapRnaV5,789 transMapV5,895 18218656 augustusGene,315 transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainNetRn6,431 chainNetRn6,436 chainNetRn6,721 chainRn6,428 chainRn6,433 chainRn6,718 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netRn6,428 netRn6,433 netRn6,718 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainNetRn6,1088 chainRn6,1085 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netRn6,1085 transMapEnsemblV5,377 transMapEstV5,346 transMapRefSeqV5,346 transMapRnaV5,346 transMapV5,452 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainNetRn6,1050 chainRn6,1047 ensGene,47 ensGene,198 est,810 intronEst,894 mrna,527 netRn6,1047 refSeqComposite,1741 xenoRefGene,311 2003 augustusGene,333 chainNetRn6,1084 chainNetRn6,1116 chainRn6,1081 chainRn6,1113 netRn6,1081 netRn6,1113 2004 est,790 intronEst,874 mrna,507 uniprot,2045 2005 refSeqComposite,1815 xenoRefGene,385 2006 windowmaskerSdust,107 2007 chainNetRn6,1023 chainRn6,1020 netRn6,1020 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 2008 augustusGene,308 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 2012 uniprot,2000 2013 est,765 gap,16 gold,18 intronEst,849 mrna,482 2014 chainNetRn6,6 chainNetRn6,71 chainNetRn6,312 chainNetRn6Viewchain,4 chainNetRn6Viewnet,4 chainRn6,5 chainRn6,68 chainRn6,309 netRn6,5 netRn6,68 netRn6,309 refSeqComposite,1782 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 21 gap,137 2111 chainNetRn6,725 chainRn6,722 netRn6,722 217 gap,134 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 23 uniprot,2047 23193287 est,772 intronEst,856 mrna,489 24 augustusGene,311 transMapEnsemblV5,782 transMapEstV5,751 transMapRefSeqV5,751 transMapRnaV5,751 transMapV5,857 24259432 refSeqComposite,1789 xenoRefGene,359 25 genscan,225 transMapV5,113 xenoRefGene,271 252111 chainNetRn6,730 chainRn6,727 netRn6,727 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainNetRn6,443 chainNetRn6,722 chainRn6,440 chainRn6,719 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 est,481 est,534 est,588 intronEst,114 intronEst,562 intronEst,615 intronEst,669 microsat,68 netRn6,440 netRn6,719 transMapEnsemblV5,816 transMapEstV5,785 transMapRefSeqV5,785 transMapRnaV5,785 transMapV5,891 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainNetRn6,1086 chainRn6,1083 ensGene,201 netRn6,1083 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 31600 chainNetRn6,741 chainNetRn6,753 chainRn6,738 chainRn6,750 netRn6,738 netRn6,750 32 est,793 intronEst,84 intronEst,877 mrna,510 32000 chainNetRn6,765 chainRn6,762 netRn6,762 32111 chainNetRn6,727 chainRn6,724 netRn6,724 325 chainNetRn6,732 chainNetRn6,744 chainRn6,729 chainRn6,741 netRn6,729 netRn6,741 33 refSeqComposite,1818 xenoRefGene,388 34990190 refSeqComposite,1560 360 chainNetRn6,733 chainNetRn6,745 chainRn6,730 chainRn6,742 netRn6,730 netRn6,742 3600 chainNetRn6,738 chainNetRn6,750 chainRn6,735 chainRn6,747 netRn6,735 netRn6,747 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 36727467 refSeqComposite,1562 38-41 ensGene,203 39s ensGene,163 4 est,813 intronEst,897 mrna,530 refSeqComposite,1744 xenoRefGene,314 40 uniprot,2002 400 chainNetRn6,734 chainNetRn6,746 chainRn6,731 chainRn6,743 netRn6,731 netRn6,743 transMapV5,109 4000 chainNetRn6,762 chainRn6,759 netRn6,759 41 est,767 intronEst,851 mrna,484 418-420 nestedRepeats,359 rmsk,382 42 refSeqComposite,1784 xenoRefGene,354 420 gold,154 429 gap,139 45 refSeqComposite,945 450 chainNetRn6,735 chainNetRn6,747 chainRn6,732 chainRn6,744 netRn6,732 netRn6,744 46 gap,133 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 est,478 est,519 est,545 intronEst,559 intronEst,600 intronEst,626 transMapEnsemblV5,9 transMapEnsemblV5,783 transMapEstV5,7 transMapEstV5,752 transMapRefSeqV5,8 transMapRefSeqV5,752 transMapRnaV5,8 transMapRnaV5,752 transMapV5,6 transMapV5,858 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 500 est,35 intronEst,46 5000 chainNetRn6,694 chainRn6,691 netRn6,691 56600 chainNetRn6,742 chainNetRn6,754 chainRn6,739 chainRn6,751 netRn6,739 netRn6,751 57000 chainNetRn6,766 chainRn6,763 netRn6,763 573-80 microsat,133 simpleRepeat,93 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 6.0 chainNetRn6,8 chainNetRn6,73 chainNetRn6,314 chainNetRn6Viewchain,6 chainNetRn6Viewnet,6 chainRn6,7 chainRn6,70 chainRn6,311 netRn6,7 netRn6,70 netRn6,311 600 chainNetRn6,736 chainNetRn6,748 chainRn6,733 chainRn6,745 netRn6,733 netRn6,745 625 chainNetRn6,756 chainRn6,753 netRn6,753 637-44 augustusGene,313 transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 656-64 est,814 intronEst,898 mrna,531 refSeqComposite,1745 xenoRefGene,315 657-63 nestedRepeats,392 rmsk,415 660 chainNetRn6,757 chainRn6,754 netRn6,754 67 gold,153 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 700 chainNetRn6,758 chainRn6,755 netRn6,755 72111 chainNetRn6,728 chainRn6,725 netRn6,725 743-8 nestedRepeats,414 rmsk,437 750 chainNetRn6,759 chainRn6,756 est,668 intronEst,749 netRn6,756 7600 chainNetRn6,739 chainNetRn6,751 chainRn6,736 chainRn6,748 netRn6,736 netRn6,748 78-94 genscan,228 8000 chainNetRn6,763 chainRn6,760 netRn6,760 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainNetRn6,760 chainRn6,757 netRn6,757 9149143 genscan,230 93 uniprot,1483 96 est,716 intronEst,797 mrna,432 refSeqComposite,1281 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainNetRn6,81 chainNetRn6,151 chainNetRn6,204 chainNetRn6,463 chainNetRn6,473 chainNetRn6,477 chainNetRn6,544 chainNetRn6,561 chainNetRn6,564 chainNetRn6,631 chainNetRn6,636 chainNetRn6,642 chainNetRn6,646 chainNetRn6,657 chainNetRn6,689 chainNetRn6,808 chainNetRn6,822 chainNetRn6,828 chainNetRn6,834 chainNetRn6,838 chainNetRn6,841 chainNetRn6,869 chainNetRn6,1059 chainNetRn6,1083 chainNetRn6,1099 chainRn6,78 chainRn6,148 chainRn6,201 chainRn6,460 chainRn6,470 chainRn6,474 chainRn6,541 chainRn6,558 chainRn6,561 chainRn6,628 chainRn6,633 chainRn6,639 chainRn6,643 chainRn6,654 chainRn6,686 chainRn6,805 chainRn6,819 chainRn6,825 chainRn6,831 chainRn6,835 chainRn6,838 chainRn6,866 chainRn6,1056 chainRn6,1080 chainRn6,1096 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 est,118 est,135 est,170 est,196 est,269 est,388 est,468 est,472 est,598 est,624 est,632 est,685 est,704 gap,100 gap,104 gc5BaseBw,44 genscan,102 genscan,132 gold,118 gold,124 intronEst,117 intronEst,151 intronEst,199 intronEst,216 intronEst,251 intronEst,277 intronEst,350 intronEst,469 intronEst,549 intronEst,553 intronEst,679 intronEst,705 intronEst,713 intronEst,766 intronEst,785 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,215 mrna,334 mrna,401 mrna,420 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netRn6,78 netRn6,148 netRn6,201 netRn6,460 netRn6,470 netRn6,474 netRn6,541 netRn6,558 netRn6,561 netRn6,628 netRn6,633 netRn6,639 netRn6,643 netRn6,654 netRn6,686 netRn6,805 netRn6,819 netRn6,825 netRn6,831 netRn6,835 netRn6,838 netRn6,866 netRn6,1056 netRn6,1080 netRn6,1096 refSeqComposite,148 refSeqComposite,159 refSeqComposite,296 refSeqComposite,311 refSeqComposite,533 refSeqComposite,646 refSeqComposite,794 refSeqComposite,1056 refSeqComposite,1250 refSeqComposite,1269 refSeqComposite,1522 refSeqComposite,1541 refSeqComposite,1567 refSeqComposite,1656 refSeqComposite,1759 refSeqComposite,1802 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,116 transMapEnsemblV5,207 transMapEnsemblV5,320 transMapEnsemblV5,356 transMapEnsemblV5,400 transMapEnsemblV5,426 transMapEnsemblV5,479 transMapEnsemblV5,549 transMapEnsemblV5,628 transMapEnsemblV5,656 transMapEnsemblV5,715 transMapEstV5,52 transMapEstV5,85 transMapEstV5,176 transMapEstV5,289 transMapEstV5,325 transMapEstV5,369 transMapEstV5,395 transMapEstV5,448 transMapEstV5,518 transMapEstV5,597 transMapEstV5,625 transMapEstV5,684 transMapRefSeqV5,52 transMapRefSeqV5,85 transMapRefSeqV5,176 transMapRefSeqV5,289 transMapRefSeqV5,325 transMapRefSeqV5,369 transMapRefSeqV5,395 transMapRefSeqV5,448 transMapRefSeqV5,518 transMapRefSeqV5,597 transMapRefSeqV5,625 transMapRefSeqV5,684 transMapRnaV5,52 transMapRnaV5,85 transMapRnaV5,176 transMapRnaV5,289 transMapRnaV5,325 transMapRnaV5,369 transMapRnaV5,395 transMapRnaV5,448 transMapRnaV5,518 transMapRnaV5,597 transMapRnaV5,625 transMapRnaV5,684 transMapV5,53 transMapV5,191 transMapV5,282 transMapV5,395 transMapV5,431 transMapV5,475 transMapV5,501 transMapV5,554 transMapV5,624 transMapV5,703 transMapV5,731 transMapV5,790 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-114-31-123 chainNetRn6,682 chainRn6,679 netRn6,679 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainNetRn6,594 chainRn6,591 netRn6,591 about chainNetRn6,469 chainNetRn6,482 chainNetRn6,858 chainRn6,466 chainRn6,479 chainRn6,855 est,34 est,414 gap,36 genscan,127 gold,38 intronEst,45 intronEst,495 microsat,98 mrna,351 netRn6,466 netRn6,479 netRn6,855 refSeqComposite,96 refSeqComposite,854 refSeqComposite,1189 refSeqComposite,1385 refSeqComposite,1464 simpleRepeat,59 transMapEnsemblV5,133 transMapEstV5,102 transMapRefSeqV5,102 transMapRnaV5,102 transMapV5,208 xenoRefGene,178 above chainNetRn6,541 chainNetRn6,553 chainNetRn6,573 chainRn6,538 chainRn6,550 chainRn6,570 nestedRepeats,218 netRn6,538 netRn6,550 netRn6,570 uniprot,1525 abundance chainNetRn6,186 chainRn6,183 netRn6,183 acad chainNetRn6,1079 chainRn6,1076 netRn6,1076 acc ucscToRefSeq,2 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 refSeqComposite,1291 refSeqComposite,1355 refSeqComposite,1445 refSeqComposite,1654 transMapEnsemblV5,519 transMapEnsemblV5,578 transMapEstV5,488 transMapEstV5,547 transMapRefSeqV5,488 transMapRefSeqV5,547 transMapRnaV5,488 transMapRnaV5,547 transMapV5,594 transMapV5,653 uniprot,896 uniprot,1706 uniprot,1838 accessed refSeqComposite,1300 refSeqComposite,1323 transMapEnsemblV5,528 transMapEstV5,497 transMapRefSeqV5,497 transMapRnaV5,497 transMapV5,603 accesses refSeqComposite,1628 accessing refSeqComposite,1386 transMapEnsemblV5,571 transMapEstV5,540 transMapRefSeqV5,540 transMapRnaV5,540 transMapV5,646 accession refSeqComposite,781 refSeqComposite,806 ucscToINSDC,2 ucscToINSDC,23 ucscToRefSeq,4 ucscToRefSeq,18 xenoRefGene,118 xenoRefGene,130 accession.version-srcuniq.destuniq transMapEnsemblV5,422 transMapEstV5,391 transMapRefSeqV5,391 transMapRnaV5,391 transMapV5,497 accessions refSeqComposite,222 refSeqComposite,351 refSeqComposite,495 transMapEnsemblV5,394 transMapEstV5,363 transMapRefSeqV5,363 transMapRnaV5,363 transMapV5,469 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainNetRn6,681 chainRn6,678 netRn6,678 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 est,763 est,788 intronEst,847 intronEst,872 microsat,126 mrna,480 mrna,505 refSeqComposite,1780 refSeqComposite,1813 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainNetRn6,604 chainRn6,601 nestedRepeats,147 netRn6,601 transMapEnsemblV5,428 transMapEnsemblV5,438 transMapEstV5,397 transMapEstV5,407 transMapRefSeqV5,397 transMapRefSeqV5,407 transMapRnaV5,397 transMapRnaV5,407 transMapV5,503 transMapV5,513 uniprot,1187 additional nestedRepeats,288 rmsk,295 additions refSeqComposite,119 adjust refSeqComposite,744 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainNetRn6,944 chainNetRn6,976 chainRn6,941 chainRn6,973 netRn6,941 netRn6,973 advise refSeqComposite,78 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainNetRn6,91 chainRn6,88 netRn6,88 after chainNetRn6,916 chainRn6,913 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netRn6,913 uniprot,294 uniprot,1329 ag intronEst,91 again transMapEnsemblV5,410 transMapEstV5,379 transMapRefSeqV5,379 transMapRnaV5,379 transMapV5,485 uniprot,629 uniprot,1500 against est,653 intronEst,37 intronEst,734 mrna,344 mrna,393 refSeqComposite,1232 transMapEnsemblV5,126 transMapEstV5,95 transMapRefSeqV5,95 transMapRnaV5,95 transMapV5,201 xenoRefGene,222 agarwala windowmaskerSdust,98 agp gap,50 gap,59 gap,66 gold,49 gold,58 gold,65 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 refSeqComposite,1771 transMapEnsemblV5,736 transMapEstV5,705 transMapRefSeqV5,705 transMapRnaV5,705 transMapV5,811 xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainNetRn6,202 chainRn6,199 est,683 intronEst,764 netRn6,199 uniprot,1216 alignable chainNetRn6,26 chainNetRn6,42 chainRn6,23 chainRn6,39 netRn6,23 netRn6,39 aligned chainNetRn6,597 chainRn6,594 est,652 est,688 intronEst,36 intronEst,155 intronEst,733 intronEst,769 mrna,392 mrna,404 netRn6,594 refSeqComposite,81 refSeqComposite,190 refSeqComposite,305 refSeqComposite,898 refSeqComposite,1061 refSeqComposite,1231 refSeqComposite,1253 transMapV5,117 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,221 xenoRefGene,243 aligning chainNetRn6,140 chainNetRn6,341 chainNetRn6,371 chainRn6,137 chainRn6,338 chainRn6,368 est,400 intronEst,481 netRn6,137 netRn6,338 netRn6,368 uniprot,952 alignment chainNetRn6,266 chainNetRn6,1026 chainRn6,263 chainRn6,1023 est,58 est,423 est,429 est,441 est,693 est,806 intronEst,78 intronEst,142 intronEst,504 intronEst,510 intronEst,522 intronEst,774 intronEst,890 mrna,39 mrna,362 mrna,368 mrna,380 mrna,409 mrna,523 netRn6,9 netRn6,263 netRn6,1023 refSeqComposite,194 refSeqComposite,328 refSeqComposite,460 refSeqComposite,1150 refSeqComposite,1242 refSeqComposite,1258 refSeqComposite,1737 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,104 transMapEnsemblV5,141 transMapEnsemblV5,197 transMapEnsemblV5,211 transMapEnsemblV5,390 transMapEnsemblV5,433 transMapEstV5,25 transMapEstV5,48 transMapEstV5,73 transMapEstV5,110 transMapEstV5,166 transMapEstV5,180 transMapEstV5,359 transMapEstV5,402 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,73 transMapRefSeqV5,110 transMapRefSeqV5,166 transMapRefSeqV5,180 transMapRefSeqV5,359 transMapRefSeqV5,402 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,73 transMapRnaV5,110 transMapRnaV5,166 transMapRnaV5,180 transMapRnaV5,359 transMapRnaV5,402 transMapV5,24 transMapV5,49 transMapV5,179 transMapV5,216 transMapV5,272 transMapV5,286 transMapV5,465 transMapV5,508 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 chainNetRn6,13 chainNetRn6,67 chainNetRn6,456 chainNetRn6,609 chainNetRn6,621 chainNetRn6,629 chainNetRn6,656 chainNetRn6,774 chainNetRn6,1046 chainNetRn6,1111 chainNetRn6Viewchain,11 chainNetRn6Viewnet,11 chainRn6,10 chainRn6,64 chainRn6,453 chainRn6,606 chainRn6,618 chainRn6,626 chainRn6,653 chainRn6,771 chainRn6,1043 chainRn6,1108 est,16 est,702 intronEst,17 intronEst,783 mrna,17 mrna,418 ncbiRefSeqPsl,2 ncbiRefSeqPsl,4 netRn6,64 netRn6,453 netRn6,606 netRn6,618 netRn6,626 netRn6,653 netRn6,771 netRn6,1043 netRn6,1108 refSeqComposite,268 refSeqComposite,367 refSeqComposite,434 refSeqComposite,436 refSeqComposite,1211 refSeqComposite,1267 refSeqComposite,1424 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,155 transMapEnsemblV5,168 transMapEnsemblV5,327 transMapEnsemblV5,340 transMapEnsemblV5,350 transMapEnsemblV5,373 transMapEnsemblV5,444 transMapEnsemblV5,456 transMapEnsemblV5,771 transMapEstV5,19 transMapEstV5,41 transMapEstV5,124 transMapEstV5,137 transMapEstV5,296 transMapEstV5,309 transMapEstV5,319 transMapEstV5,342 transMapEstV5,413 transMapEstV5,425 transMapEstV5,740 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,124 transMapRefSeqV5,137 transMapRefSeqV5,296 transMapRefSeqV5,309 transMapRefSeqV5,319 transMapRefSeqV5,342 transMapRefSeqV5,413 transMapRefSeqV5,425 transMapRefSeqV5,740 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,124 transMapRnaV5,137 transMapRnaV5,296 transMapRnaV5,309 transMapRnaV5,319 transMapRnaV5,342 transMapRnaV5,413 transMapRnaV5,425 transMapRnaV5,740 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,68 transMapV5,86 transMapV5,128 transMapV5,141 transMapV5,230 transMapV5,243 transMapV5,402 transMapV5,415 transMapV5,425 transMapV5,448 transMapV5,519 transMapV5,531 transMapV5,846 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,257 aligns transMapV5,163 all augustusGene,207 chainNetRn6,628 chainRn6,625 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 est,192 est,246 est,301 est,396 est,488 intronEst,120 intronEst,273 intronEst,327 intronEst,382 intronEst,477 intronEst,569 mrna,138 mrna,192 mrna,247 ncbiRefSeq,2 nestedRepeats,138 nestedRepeats,170 netRn6,625 refSeqComposite,34 refSeqComposite,85 refSeqComposite,178 refSeqComposite,183 refSeqComposite,199 refSeqComposite,201 refSeqComposite,215 refSeqComposite,345 refSeqComposite,381 refSeqComposite,589 refSeqComposite,792 refSeqComposite,1410 refSeqComposite,1574 refSeqComposite,1666 refSeqComposite,1671 rmsk,65 transMapEnsemblV5,191 transMapEstV5,160 transMapRefSeqV5,160 transMapRnaV5,160 transMapV5,266 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allowed est,664 intronEst,745 allows augustusGene,168 chainNetRn6,86 chainRn6,83 est,391 intronEst,472 mrna,337 netRn6,83 refSeqComposite,825 transMapEnsemblV5,119 transMapEnsemblV5,289 transMapEstV5,88 transMapEstV5,258 transMapRefSeqV5,88 transMapRefSeqV5,258 transMapRnaV5,88 transMapRnaV5,258 transMapV5,194 transMapV5,364 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,182 transMapEstV5,151 transMapRefSeqV5,151 transMapRnaV5,151 transMapV5,257 alpha refSeqComposite,418 already chainNetRn6,819 chainRn6,816 netRn6,816 also chainNetRn6,97 chainRn6,94 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 est,273 est,381 est,432 est,601 gap,32 gold,34 intronEst,354 intronEst,462 intronEst,513 intronEst,682 mrna,219 mrna,327 mrna,371 netRn6,94 refSeqComposite,1129 refSeqComposite,1321 refSeqComposite,1354 refSeqComposite,1586 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,648 transMapEstV5,78 transMapEstV5,113 transMapEstV5,617 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,617 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,617 transMapV5,184 transMapV5,219 transMapV5,723 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter est,129 intronEst,210 mrna,75 alternating gold,90 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,121 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 ambiguous refSeqComposite,990 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainNetRn6,158 chainNetRn6,185 chainNetRn6,191 chainRn6,155 chainRn6,182 chainRn6,188 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 est,450 est,497 est,580 gc5BaseBw,65 intronEst,61 intronEst,531 intronEst,578 intronEst,661 nestedRepeats,196 nestedRepeats,347 netRn6,155 netRn6,182 netRn6,188 refSeqComposite,748 refSeqComposite,819 refSeqComposite,1241 refSeqComposite,1773 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis refSeqComposite,76 refSeqComposite,1459 transMapEnsemblV5,540 transMapEstV5,509 transMapRefSeqV5,509 transMapRnaV5,509 transMapV5,615 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainNetRn6,11 chainNetRn6,103 chainNetRn6,118 chainNetRn6,234 chainNetRn6,242 chainNetRn6,256 chainNetRn6,296 chainNetRn6,319 chainNetRn6,445 chainNetRn6,600 chainNetRn6,635 chainNetRn6,644 chainNetRn6,785 chainNetRn6,863 chainNetRn6,895 chainNetRn6,906 chainNetRn6,915 chainNetRn6,940 chainNetRn6,955 chainNetRn6,980 chainNetRn6,986 chainNetRn6,992 chainNetRn6,999 chainNetRn6,1005 chainNetRn6,1069 chainNetRn6,1074 chainNetRn6Viewchain,9 chainNetRn6Viewnet,9 chainRn6,100 chainRn6,115 chainRn6,231 chainRn6,239 chainRn6,253 chainRn6,293 chainRn6,316 chainRn6,442 chainRn6,597 chainRn6,632 chainRn6,641 chainRn6,782 chainRn6,860 chainRn6,892 chainRn6,903 chainRn6,912 chainRn6,937 chainRn6,952 chainRn6,977 chainRn6,983 chainRn6,989 chainRn6,996 chainRn6,1002 chainRn6,1066 chainRn6,1071 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 est,10 est,26 est,48 est,88 est,132 est,293 est,457 est,471 est,479 est,607 est,713 gap,5 gap,81 gap,103 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,92 gold,106 gold,112 intronEst,11 intronEst,27 intronEst,88 intronEst,132 intronEst,169 intronEst,213 intronEst,374 intronEst,538 intronEst,552 intronEst,560 intronEst,688 intronEst,794 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,239 mrna,358 mrna,429 ncbiRefSeq,7 ncbiRefSeq,16 ncbiRefSeqCurated,14 ncbiRefSeqGenomicDiff,8 ncbiRefSeqGenomicDiff,13 ncbiRefSeqOther,16 ncbiRefSeqPredicted,12 ncbiRefSeqPsl,8 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netRn6,100 netRn6,115 netRn6,231 netRn6,239 netRn6,253 netRn6,293 netRn6,316 netRn6,442 netRn6,597 netRn6,632 netRn6,641 netRn6,782 netRn6,860 netRn6,892 netRn6,903 netRn6,912 netRn6,937 netRn6,952 netRn6,977 netRn6,983 netRn6,989 netRn6,996 netRn6,1002 netRn6,1066 netRn6,1071 refSeqComposite,8 refSeqComposite,22 refSeqComposite,72 refSeqComposite,110 refSeqComposite,120 refSeqComposite,143 refSeqComposite,192 refSeqComposite,203 refSeqComposite,231 refSeqComposite,257 refSeqComposite,265 refSeqComposite,273 refSeqComposite,301 refSeqComposite,365 refSeqComposite,469 refSeqComposite,493 refSeqComposite,575 refSeqComposite,594 refSeqComposite,657 refSeqComposite,667 refSeqComposite,707 refSeqComposite,719 refSeqComposite,805 refSeqComposite,830 refSeqComposite,863 refSeqComposite,883 refSeqComposite,915 refSeqComposite,957 refSeqComposite,973 refSeqComposite,996 refSeqComposite,1011 refSeqComposite,1128 refSeqComposite,1147 refSeqComposite,1173 refSeqComposite,1178 refSeqComposite,1278 refSeqComposite,1373 refSeqComposite,1475 refSeqComposite,1493 refSeqComposite,1633 refSeqComposite,1674 refSeqComposite,1724 refSeqComposite,1810 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,94 transMapEnsemblV5,174 transMapEnsemblV5,199 transMapEnsemblV5,366 transMapEnsemblV5,368 transMapEnsemblV5,392 transMapEnsemblV5,409 transMapEnsemblV5,435 transMapEnsemblV5,466 transMapEnsemblV5,482 transMapEnsemblV5,497 transMapEnsemblV5,554 transMapEnsemblV5,639 transMapEnsemblV5,688 transMapEnsemblV5,702 transMapEnsemblV5,709 transMapEnsemblV5,767 transMapEstV5,9 transMapEstV5,63 transMapEstV5,143 transMapEstV5,168 transMapEstV5,335 transMapEstV5,337 transMapEstV5,361 transMapEstV5,378 transMapEstV5,404 transMapEstV5,435 transMapEstV5,451 transMapEstV5,466 transMapEstV5,523 transMapEstV5,608 transMapEstV5,657 transMapEstV5,671 transMapEstV5,678 transMapEstV5,736 transMapRefSeqV5,10 transMapRefSeqV5,63 transMapRefSeqV5,143 transMapRefSeqV5,168 transMapRefSeqV5,335 transMapRefSeqV5,337 transMapRefSeqV5,361 transMapRefSeqV5,378 transMapRefSeqV5,404 transMapRefSeqV5,435 transMapRefSeqV5,451 transMapRefSeqV5,466 transMapRefSeqV5,523 transMapRefSeqV5,608 transMapRefSeqV5,657 transMapRefSeqV5,671 transMapRefSeqV5,678 transMapRefSeqV5,736 transMapRnaV5,10 transMapRnaV5,63 transMapRnaV5,143 transMapRnaV5,168 transMapRnaV5,335 transMapRnaV5,337 transMapRnaV5,361 transMapRnaV5,378 transMapRnaV5,404 transMapRnaV5,435 transMapRnaV5,451 transMapRnaV5,466 transMapRnaV5,523 transMapRnaV5,608 transMapRnaV5,657 transMapRnaV5,671 transMapRnaV5,678 transMapRnaV5,736 transMapV5,8 transMapV5,16 transMapV5,74 transMapV5,88 transMapV5,139 transMapV5,162 transMapV5,169 transMapV5,249 transMapV5,274 transMapV5,441 transMapV5,443 transMapV5,467 transMapV5,484 transMapV5,510 transMapV5,541 transMapV5,557 transMapV5,572 transMapV5,629 transMapV5,714 transMapV5,763 transMapV5,777 transMapV5,784 transMapV5,842 ucscToINSDC,11 ucscToRefSeq,6 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotated refSeqComposite,558 rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainNetRn6,307 chainRn6,304 ensGene,165 netRn6,304 refSeqComposite,67 refSeqComposite,668 refSeqComposite,1117 refSeqComposite,1146 refSeqComposite,1192 rmsk,38 transMapEnsemblV5,609 transMapEstV5,578 transMapRefSeqV5,578 transMapRnaV5,578 transMapV5,684 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations ensGene,156 genscan,120 ncbiRefSeqOther,6 nestedRepeats,71 refSeqComposite,191 refSeqComposite,197 refSeqComposite,205 refSeqComposite,220 refSeqComposite,349 refSeqComposite,383 refSeqComposite,483 refSeqComposite,864 refSeqComposite,1471 refSeqComposite,1503 refSeqComposite,1539 transMapEnsemblV5,60 transMapEnsemblV5,542 transMapEnsemblV5,703 transMapEnsemblV5,711 transMapEstV5,511 transMapEstV5,672 transMapEstV5,680 transMapRefSeqV5,511 transMapRefSeqV5,672 transMapRefSeqV5,680 transMapRnaV5,511 transMapRnaV5,672 transMapRnaV5,680 transMapV5,76 transMapV5,617 transMapV5,778 transMapV5,786 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 another refSeqComposite,327 transMapV5,81 any est,316 est,550 intronEst,397 intronEst,631 mrna,262 refSeqComposite,274 refSeqComposite,1356 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 refSeqComposite,1312 refSeqComposite,1366 transMapEnsemblV5,566 transMapEstV5,535 transMapRefSeqV5,535 transMapRnaV5,535 transMapV5,641 appending transMapEnsemblV5,399 transMapEstV5,368 transMapRefSeqV5,368 transMapRnaV5,368 transMapV5,474 apply est,188 intronEst,269 mrna,134 approach uniprot,1531 appropriate refSeqComposite,775 xenoRefGene,112 apr est,811 genscan,224 intronEst,895 mrna,528 refSeqComposite,1742 xenoRefGene,312 apsects gc5BaseBw,51 arbitrary refSeqComposite,941 archive ensGene,142 refSeqComposite,1708 uniprot,893 uniprot,1670 uniprot,1908 archives refSeqComposite,1347 refSeqComposite,1692 uniprot,1832 are augustusGene,27 chainNetRn6,25 chainNetRn6,44 chainNetRn6,57 chainNetRn6,147 chainNetRn6,217 chainNetRn6,228 chainNetRn6,330 chainNetRn6,399 chainNetRn6,420 chainNetRn6,427 chainNetRn6,510 chainNetRn6,701 chainRn6,22 chainRn6,41 chainRn6,54 chainRn6,144 chainRn6,214 chainRn6,225 chainRn6,327 chainRn6,396 chainRn6,417 chainRn6,424 chainRn6,507 chainRn6,698 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 est,30 est,67 est,149 est,159 gap,24 gap,69 genscan,25 genscan,160 gold,26 gold,84 gold,101 intronEst,41 intronEst,230 intronEst,240 intronEst,804 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netRn6,22 netRn6,41 netRn6,54 netRn6,144 netRn6,214 netRn6,225 netRn6,327 netRn6,396 netRn6,417 netRn6,424 netRn6,507 netRn6,698 refSeqComposite,180 refSeqComposite,233 refSeqComposite,407 refSeqComposite,428 refSeqComposite,768 refSeqComposite,893 refSeqComposite,935 refSeqComposite,999 refSeqComposite,1026 refSeqComposite,1343 refSeqComposite,1377 refSeqComposite,1400 refSeqComposite,1478 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,454 transMapEnsemblV5,461 transMapEnsemblV5,470 transMapEnsemblV5,504 transMapEnsemblV5,514 transMapEnsemblV5,543 transMapEnsemblV5,582 transMapEstV5,42 transMapEstV5,423 transMapEstV5,430 transMapEstV5,439 transMapEstV5,473 transMapEstV5,483 transMapEstV5,512 transMapEstV5,551 transMapRefSeqV5,42 transMapRefSeqV5,423 transMapRefSeqV5,430 transMapRefSeqV5,439 transMapRefSeqV5,473 transMapRefSeqV5,483 transMapRefSeqV5,512 transMapRefSeqV5,551 transMapRnaV5,42 transMapRnaV5,423 transMapRnaV5,430 transMapRnaV5,439 transMapRnaV5,473 transMapRnaV5,483 transMapRnaV5,512 transMapRnaV5,551 transMapV5,41 transMapV5,69 transMapV5,529 transMapV5,536 transMapV5,545 transMapV5,579 transMapV5,589 transMapV5,618 transMapV5,657 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainNetRn6,953 chainRn6,950 nestedRepeats,305 netRn6,950 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 articles refSeqComposite,1105 as augustusGene,77 augustusGene,79 chainNetRn6,472 chainNetRn6,512 chainNetRn6,535 chainNetRn6,550 chainNetRn6,812 chainNetRn6,867 chainNetRn6,925 chainRn6,469 chainRn6,509 chainRn6,532 chainRn6,547 chainRn6,809 chainRn6,864 chainRn6,922 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 est,597 gap,71 genscan,35 genscan,37 intronEst,678 microsat,21 nestedRepeats,125 netRn6,469 netRn6,509 netRn6,532 netRn6,547 netRn6,809 netRn6,864 netRn6,922 refSeqComposite,414 refSeqComposite,506 refSeqComposite,526 refSeqComposite,539 refSeqComposite,626 refSeqComposite,894 refSeqComposite,1223 refSeqComposite,1405 refSeqComposite,1521 refSeqComposite,1641 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,188 transMapEnsemblV5,215 transMapEnsemblV5,227 transMapEnsemblV5,516 transMapEnsemblV5,627 transMapEstV5,157 transMapEstV5,184 transMapEstV5,196 transMapEstV5,485 transMapEstV5,596 transMapRefSeqV5,157 transMapRefSeqV5,184 transMapRefSeqV5,196 transMapRefSeqV5,485 transMapRefSeqV5,596 transMapRnaV5,157 transMapRnaV5,184 transMapRnaV5,196 transMapRnaV5,485 transMapRnaV5,596 transMapV5,263 transMapV5,290 transMapV5,302 transMapV5,591 transMapV5,702 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refSeqComposite,123 aspect refSeqComposite,709 assemblies augustusGene,196 augustusGene,237 chainNetRn6,329 chainNetRn6,592 chainRn6,326 chainRn6,589 gap,131 netRn6,326 netRn6,589 refSeqComposite,184 rmsk,107 transMapEnsemblV5,193 transMapEstV5,162 transMapRefSeqV5,162 transMapRnaV5,162 transMapV5,268 assembly augustusGene,197 chainNetRn6,156 chainNetRn6,164 chainNetRn6,316 chainRn6,153 chainRn6,161 chainRn6,313 gap,20 gap,22 gap,29 gap,38 gap,46 gap,117 gold,1 gold,2 gold,22 gold,24 gold,31 gold,40 gold,45 netRn6,153 netRn6,161 netRn6,313 refSeqComposite,371 refSeqComposite,479 transMapV5,106 transMapV5,124 transMapV5,135 ucscToINSDC,40 ucscToRefSeq,34 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assessing refSeqComposite,653 assigned transMapEnsemblV5,462 transMapEstV5,431 transMapRefSeqV5,431 transMapRnaV5,431 transMapV5,537 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 est,110 gc5BaseBw,34 intronEst,191 refSeqComposite,1401 rmsk,224 simpleRepeat,51 transMapEnsemblV5,583 transMapEstV5,552 transMapRefSeqV5,552 transMapRnaV5,552 transMapV5,658 uniprot,787 associates ucscToINSDC,16 ucscToRefSeq,11 association refSeqComposite,685 astashyn refSeqComposite,1758 xenoRefGene,328 at chainNetRn6,429 chainNetRn6,807 chainNetRn6,929 chainNetRn6,964 chainNetRn6,969 chainNetRn6,1010 chainRn6,426 chainRn6,804 chainRn6,926 chainRn6,961 chainRn6,966 chainRn6,1007 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 est,265 est,549 est,594 est,714 est,730 intronEst,67 intronEst,82 intronEst,107 intronEst,346 intronEst,630 intronEst,675 intronEst,795 intronEst,814 microsat,28 microsat,77 mrna,211 mrna,430 mrna,447 netRn6,426 netRn6,804 netRn6,926 netRn6,961 netRn6,966 netRn6,1007 refSeqComposite,735 refSeqComposite,1050 refSeqComposite,1154 refSeqComposite,1279 refSeqComposite,1716 rmsk,243 rmsk,267 transMapEnsemblV5,295 transMapEnsemblV5,684 transMapEstV5,264 transMapEstV5,653 transMapRefSeqV5,264 transMapRefSeqV5,653 transMapRnaV5,264 transMapRnaV5,653 transMapV5,118 transMapV5,370 transMapV5,759 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,581 intronEst,662 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,539 transMapEstV5,508 transMapRefSeqV5,508 transMapRnaV5,508 transMapV5,614 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 refSeqComposite,181 refSeqComposite,277 refSeqComposite,476 refSeqComposite,569 refSeqComposite,654 refSeqComposite,1344 refSeqComposite,1596 rmsk,73 transMapEnsemblV5,189 transMapEnsemblV5,247 transMapEstV5,158 transMapEstV5,216 transMapRefSeqV5,158 transMapRefSeqV5,216 transMapRnaV5,158 transMapRnaV5,216 transMapV5,264 transMapV5,322 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainNetRn6,613 chainNetRn6,620 chainRn6,610 chainRn6,617 netRn6,610 netRn6,617 axtchain chainNetRn6,625 chainNetRn6,712 chainNetRn6,960 chainRn6,622 chainRn6,709 chainRn6,957 netRn6,622 netRn6,709 netRn6,957 b transMapEnsemblV5,720 transMapEnsemblV5,730 transMapEstV5,689 transMapEstV5,699 transMapRefSeqV5,689 transMapRefSeqV5,699 transMapRnaV5,689 transMapRnaV5,699 transMapV5,795 transMapV5,805 back chainNetRn6,605 chainRn6,602 netRn6,602 baertsch augustusGene,290 chainNetRn6,998 chainNetRn6,1056 chainNetRn6,1102 chainRn6,995 chainRn6,1053 chainRn6,1099 netRn6,995 netRn6,1053 netRn6,1099 transMapEnsemblV5,761 transMapEstV5,730 transMapRefSeqV5,730 transMapRnaV5,730 transMapV5,836 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 est,386 est,420 est,697 est,705 est,717 intronEst,467 intronEst,501 intronEst,778 intronEst,786 intronEst,798 mrna,359 mrna,413 mrna,421 mrna,433 refSeqComposite,1262 refSeqComposite,1270 refSeqComposite,1282 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 base-level transMapEnsemblV5,321 transMapEstV5,290 transMapRefSeqV5,290 transMapRnaV5,290 transMapV5,396 based augustusGene,28 chainNetRn6,332 chainNetRn6,358 chainRn6,329 chainRn6,355 genscan,26 netRn6,329 netRn6,355 refSeqComposite,252 refSeqComposite,360 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 est,36 est,397 est,670 gap,140 gc5BaseBw,25 intronEst,47 intronEst,85 intronEst,478 intronEst,751 refSeqComposite,901 transMapV5,166 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 bc149621.1-1 transMapEnsemblV5,465 transMapEnsemblV5,476 transMapEstV5,434 transMapEstV5,445 transMapRefSeqV5,434 transMapRefSeqV5,445 transMapRnaV5,434 transMapRnaV5,445 transMapV5,540 transMapV5,551 bc149621.1-1.1 transMapEnsemblV5,487 transMapEstV5,456 transMapRefSeqV5,456 transMapRnaV5,456 transMapV5,562 bc149621.1-2 transMapEnsemblV5,467 transMapEnsemblV5,489 transMapEstV5,436 transMapEstV5,458 transMapRefSeqV5,436 transMapRefSeqV5,458 transMapRnaV5,436 transMapRnaV5,458 transMapV5,542 transMapV5,564 bc149621.1-2.1 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 bc149621.1-2.2 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 be augustusGene,99 chainNetRn6,113 chainNetRn6,439 chainRn6,110 chainRn6,436 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 est,109 est,122 est,144 est,253 est,263 est,274 est,305 est,323 est,333 est,382 est,433 est,529 est,637 gc5BaseBw,41 intronEst,58 intronEst,81 intronEst,190 intronEst,203 intronEst,225 intronEst,334 intronEst,344 intronEst,355 intronEst,386 intronEst,404 intronEst,414 intronEst,463 intronEst,514 intronEst,610 intronEst,718 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,220 mrna,251 mrna,269 mrna,279 mrna,328 mrna,372 nestedRepeats,269 nestedRepeats,291 netRn6,110 netRn6,436 refSeqComposite,304 refSeqComposite,729 refSeqComposite,939 refSeqComposite,970 refSeqComposite,1030 refSeqComposite,1107 refSeqComposite,1195 refSeqComposite,1299 refSeqComposite,1306 refSeqComposite,1322 refSeqComposite,1394 refSeqComposite,1454 refSeqComposite,1485 refSeqComposite,1505 refSeqComposite,1513 refSeqComposite,1587 refSeqComposite,1609 refSeqComposite,1679 refSeqComposite,1704 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,110 transMapEnsemblV5,145 transMapEnsemblV5,527 transMapEnsemblV5,556 transMapEnsemblV5,611 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,649 transMapEstV5,79 transMapEstV5,114 transMapEstV5,496 transMapEstV5,525 transMapEstV5,580 transMapEstV5,588 transMapEstV5,611 transMapEstV5,618 transMapRefSeqV5,79 transMapRefSeqV5,114 transMapRefSeqV5,496 transMapRefSeqV5,525 transMapRefSeqV5,580 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,618 transMapRnaV5,79 transMapRnaV5,114 transMapRnaV5,496 transMapRnaV5,525 transMapRnaV5,580 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,618 transMapV5,185 transMapV5,220 transMapV5,602 transMapV5,631 transMapV5,686 transMapV5,694 transMapV5,717 transMapV5,724 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,88 bears est,94 intronEst,175 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 est,629 intronEst,710 uniprot,674 bed3 windowmaskerSdust,76 been chainNetRn6,580 chainRn6,577 intronEst,8 nestedRepeats,89 netRn6,577 refSeqComposite,639 refSeqComposite,677 refSeqComposite,687 refSeqComposite,702 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainNetRn6,914 chainRn6,911 est,566 intronEst,647 netRn6,911 uniprot,934 begin refSeqComposite,223 refSeqComposite,352 beginning refSeqComposite,1052 refSeqComposite,1650 beloow refSeqComposite,338 below chainNetRn6,688 chainRn6,685 ensGene,54 genscan,154 genscan,168 nestedRepeats,68 netRn6,685 refSeqComposite,1396 refSeqComposite,1533 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,747 est,775 intronEst,831 intronEst,859 microsat,102 microsat,112 microsat,114 mrna,464 mrna,492 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainNetRn6,274 chainNetRn6,522 chainRn6,271 chainRn6,519 est,712 intronEst,793 mrna,428 netRn6,271 netRn6,519 refSeqComposite,1277 transMapEnsemblV5,242 transMapEstV5,211 transMapRefSeqV5,211 transMapRnaV5,211 transMapV5,67 transMapV5,317 uniprot,1074 uniprot,1415 xenoRefGene,267 beta uniprot,364 better est,74 mrna,55 between chainNetRn6,55 chainNetRn6,630 chainNetRn6,861 chainRn6,52 chainRn6,627 chainRn6,858 est,17 est,85 gap,127 gold,98 gold,103 intronEst,18 intronEst,76 intronEst,166 mrna,18 ncbiRefSeqGenomicDiff,4 netRn6,52 netRn6,627 netRn6,858 refSeqComposite,65 refSeqComposite,462 refSeqComposite,878 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed refSeqComposite,1380 refSeqComposite,1391 refSeqComposite,1481 uniprot,1736 bigbedtobed refSeqComposite,1510 refSeqComposite,1550 transMapEnsemblV5,616 transMapEnsemblV5,661 transMapEstV5,585 transMapEstV5,630 transMapRefSeqV5,585 transMapRefSeqV5,630 transMapRnaV5,585 transMapRnaV5,630 transMapV5,691 transMapV5,736 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,546 transMapEstV5,515 transMapRefSeqV5,515 transMapRnaV5,515 transMapV5,621 bin refSeqComposite,1436 refSeqComposite,1466 binaries transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 refSeqComposite,1524 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1781 biocomput chainNetRn6,1049 chainRn6,1046 netRn6,1046 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 biological uniprot,320 biology genscan,200 birds augustusGene,203 birney ensGene,172 black gap,72 gap,111 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like est,805 intronEst,889 mrna,522 refSeqComposite,1736 xenoRefGene,306 blastz chainNetRn6,926 chainNetRn6,1113 chainRn6,923 chainRn6,1110 netRn6,923 netRn6,1110 transMapEnsemblV5,78 transMapEnsemblV5,196 transMapEstV5,47 transMapEstV5,165 transMapRefSeqV5,47 transMapRefSeqV5,165 transMapRnaV5,47 transMapRnaV5,165 transMapV5,48 transMapV5,144 transMapV5,271 blat est,657 est,666 est,803 intronEst,738 intronEst,747 intronEst,887 mrna,398 mrna,520 refSeqComposite,1238 refSeqComposite,1734 transMapEnsemblV5,167 transMapEstV5,136 transMapRefSeqV5,136 transMapRnaV5,136 transMapV5,126 transMapV5,150 transMapV5,157 transMapV5,242 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainNetRn6,48 chainNetRn6,653 chainNetRn6,674 chainRn6,45 chainRn6,650 chainRn6,671 gold,108 gold,135 intronEst,79 netRn6,45 netRn6,650 netRn6,671 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainNetRn6,101 chainNetRn6,122 chainNetRn6,176 chainNetRn6,904 chainRn6,98 chainRn6,119 chainRn6,173 chainRn6,901 netRn6,98 netRn6,119 netRn6,173 netRn6,901 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 bothgap chainNetRn6,755 chainRn6,752 netRn6,752 boundaries gold,83 box chainNetRn6,382 chainNetRn6,464 chainRn6,379 chainRn6,461 est,208 est,219 est,259 gap,112 intronEst,289 intronEst,300 intronEst,340 mrna,154 mrna,165 mrna,205 netRn6,379 netRn6,461 xenoRefGene,216 boxes chainNetRn6,128 chainNetRn6,138 chainNetRn6,453 chainRn6,125 chainRn6,135 chainRn6,450 est,179 gap,73 intronEst,260 mrna,125 nestedRepeats,126 netRn6,125 netRn6,135 netRn6,450 refSeqComposite,166 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 refSeqComposite,946 branch transMapEnsemblV5,220 transMapEstV5,189 transMapRefSeqV5,189 transMapRnaV5,189 transMapV5,295 branch-point augustusGene,55 brejov transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 brian uniprot,1959 bridge gold,133 bridged gap,101 briefly uniprot,778 brown gold,93 gold,107 refSeqComposite,1752 xenoRefGene,322 browser chainNetRn6,984 chainRn6,981 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 est,226 est,350 est,367 intronEst,307 intronEst,431 intronEst,448 mrna,172 mrna,296 mrna,313 nestedRepeats,243 netRn6,981 refSeqComposite,1125 refSeqComposite,1187 refSeqComposite,1314 refSeqComposite,1451 transMapEnsemblV5,37 transMapEnsemblV5,165 transMapEnsemblV5,533 transMapEstV5,35 transMapEstV5,134 transMapEstV5,502 transMapRefSeqV5,35 transMapRefSeqV5,134 transMapRefSeqV5,502 transMapRnaV5,35 transMapRnaV5,134 transMapRnaV5,502 transMapV5,34 transMapV5,240 transMapV5,608 ucscToINSDC,19 ucscToRefSeq,14 uniprot,1544 uniprot,1721 browsing uniprot,1662 build refSeqComposite,300 uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainNetRn6,555 chainRn6,552 est,486 est,543 est,596 intronEst,567 intronEst,624 intronEst,677 netRn6,552 refSeqComposite,427 refSeqComposite,899 refSeqComposite,1032 refSeqComposite,1452 rmsk,311 uniprot,638 uniprot,1047 button chainNetRn6,353 chainRn6,350 netRn6,350 by augustusGene,147 augustusGene,266 augustusGene,282 chainNetRn6,115 chainNetRn6,131 chainNetRn6,323 chainNetRn6,386 chainNetRn6,423 chainNetRn6,441 chainNetRn6,821 chainNetRn6,933 chainNetRn6,952 chainNetRn6,972 chainNetRn6,996 chainNetRn6,1017 chainRn6,112 chainRn6,128 chainRn6,320 chainRn6,383 chainRn6,420 chainRn6,438 chainRn6,818 chainRn6,930 chainRn6,949 chainRn6,969 chainRn6,993 chainRn6,1014 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 est,268 est,496 est,665 est,743 gap,94 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,86 intronEst,93 intronEst,349 intronEst,577 intronEst,746 intronEst,827 microsat,110 mrna,214 mrna,460 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netRn6,112 netRn6,128 netRn6,320 netRn6,383 netRn6,420 netRn6,438 netRn6,818 netRn6,930 netRn6,949 netRn6,969 netRn6,993 netRn6,1014 refSeqComposite,39 refSeqComposite,50 refSeqComposite,70 refSeqComposite,207 refSeqComposite,372 refSeqComposite,385 refSeqComposite,446 refSeqComposite,559 refSeqComposite,628 refSeqComposite,641 refSeqComposite,645 refSeqComposite,689 refSeqComposite,765 refSeqComposite,770 refSeqComposite,847 refSeqComposite,865 refSeqComposite,1204 refSeqComposite,1721 refSeqComposite,1726 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,229 transMapEnsemblV5,398 transMapEnsemblV5,681 transMapEnsemblV5,699 transMapEnsemblV5,705 transMapEnsemblV5,743 transMapEstV5,21 transMapEstV5,198 transMapEstV5,367 transMapEstV5,650 transMapEstV5,668 transMapEstV5,674 transMapEstV5,712 transMapRefSeqV5,21 transMapRefSeqV5,198 transMapRefSeqV5,367 transMapRefSeqV5,650 transMapRefSeqV5,668 transMapRefSeqV5,674 transMapRefSeqV5,712 transMapRnaV5,21 transMapRnaV5,198 transMapRnaV5,367 transMapRnaV5,650 transMapRnaV5,668 transMapRnaV5,674 transMapRnaV5,712 transMapV5,20 transMapV5,304 transMapV5,473 transMapV5,756 transMapV5,774 transMapV5,780 transMapV5,818 ucscToINSDC,50 ucscToRefSeq,44 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 refSeqComposite,917 refSeqComposite,958 refSeqComposite,985 refSeqComposite,1044 refSeqComposite,1071 refSeqComposite,1083 transMapEnsemblV5,728 transMapEnsemblV5,734 transMapEstV5,697 transMapEstV5,703 transMapRefSeqV5,697 transMapRefSeqV5,703 transMapRnaV5,697 transMapRnaV5,703 transMapV5,803 transMapV5,809 windowmaskerSdust,30 c-114100-125-31 chainNetRn6,683 chainRn6,680 netRn6,680 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainNetRn6,968 chainNetRn6,1014 chainRn6,965 chainRn6,1011 netRn6,965 netRn6,1011 calmil1 ensGene,80 refSeqComposite,1554 refSeqComposite,1618 transMapEnsemblV5,205 transMapEnsemblV5,665 transMapEstV5,174 transMapEstV5,634 transMapRefSeqV5,174 transMapRefSeqV5,634 transMapRnaV5,174 transMapRnaV5,634 transMapV5,280 transMapV5,740 uniprot,1816 calmil1.ensembl.transmapv4.bigpsl transMapEnsemblV5,593 transMapEstV5,562 transMapRefSeqV5,562 transMapRnaV5,562 calmil1.ensembl.transmapv5.bigpsl transMapV5,668 calmil1.est.transmapv4.bigpsl transMapEnsemblV5,602 transMapEstV5,571 transMapRefSeqV5,571 transMapRnaV5,571 calmil1.est.transmapv5.bigpsl transMapV5,677 calmil1.fa windowmaskerSdust,62 windowmaskerSdust,71 calmil1.refseq.transmapv4.bigpsl transMapEnsemblV5,596 transMapEnsemblV5,668 transMapEstV5,565 transMapEstV5,637 transMapRefSeqV5,565 transMapRefSeqV5,637 transMapRnaV5,565 transMapRnaV5,637 calmil1.refseq.transmapv5.bigpsl transMapV5,671 transMapV5,743 calmil1.rna.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 calmil1.rna.transmapv5.bigpsl transMapV5,674 cameron ensGene,174 can augustusGene,98 chainNetRn6,96 chainNetRn6,112 chainRn6,93 chainRn6,109 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 est,121 est,252 intronEst,202 intronEst,333 mrna,67 mrna,198 netRn6,93 netRn6,109 refSeqComposite,287 refSeqComposite,728 refSeqComposite,1106 refSeqComposite,1194 refSeqComposite,1298 refSeqComposite,1305 refSeqComposite,1320 refSeqComposite,1353 refSeqComposite,1393 refSeqComposite,1453 refSeqComposite,1461 refSeqComposite,1484 refSeqComposite,1504 refSeqComposite,1512 refSeqComposite,1565 refSeqComposite,1585 refSeqComposite,1608 refSeqComposite,1678 refSeqComposite,1703 rmsk,116 simpleRepeat,35 transMapEnsemblV5,526 transMapEnsemblV5,555 transMapEnsemblV5,610 transMapEnsemblV5,618 transMapEnsemblV5,641 transMapEnsemblV5,647 transMapEstV5,495 transMapEstV5,524 transMapEstV5,579 transMapEstV5,587 transMapEstV5,610 transMapEstV5,616 transMapRefSeqV5,495 transMapRefSeqV5,524 transMapRefSeqV5,579 transMapRefSeqV5,587 transMapRefSeqV5,610 transMapRefSeqV5,616 transMapRnaV5,495 transMapRnaV5,524 transMapRnaV5,579 transMapRnaV5,587 transMapRnaV5,610 transMapRnaV5,616 transMapV5,601 transMapV5,630 transMapV5,685 transMapV5,693 transMapV5,716 transMapV5,722 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,87 cannot uniprot,1269 canonical intronEst,70 cap-selected est,559 intronEst,640 cap-selection est,568 intronEst,649 cases chainNetRn6,198 chainNetRn6,410 chainRn6,195 chainRn6,407 netRn6,195 netRn6,407 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainNetRn6,511 chainRn6,508 netRn6,508 cauldron chainNetRn6,1066 chainRn6,1063 netRn6,1063 cause chainNetRn6,493 chainRn6,490 netRn6,490 caused chainNetRn6,114 chainRn6,111 netRn6,111 cavanaugh est,749 intronEst,833 mrna,466 cb transMapEnsemblV5,794 transMapEstV5,763 transMapRefSeqV5,763 transMapRnaV5,763 transMapV5,869 cdna augustusGene,299 est,461 est,464 intronEst,542 intronEst,545 refSeqComposite,267 refSeqComposite,363 transMapEnsemblV5,391 transMapEnsemblV5,687 transMapEnsemblV5,770 transMapEstV5,360 transMapEstV5,656 transMapEstV5,739 transMapRefSeqV5,360 transMapRefSeqV5,656 transMapRefSeqV5,739 transMapRnaV5,360 transMapRnaV5,656 transMapRnaV5,739 transMapV5,15 transMapV5,466 transMapV5,762 transMapV5,845 cdnas transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 cell uniprot,563 cells est,456 intronEst,537 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainNetRn6,2 chainNetRn6,10 chainNetRn6,31 chainNetRn6,61 chainNetRn6,64 chainNetRn6,125 chainNetRn6,278 chainNetRn6,321 chainNetRn6,416 chainNetRn6,471 chainNetRn6,575 chainNetRn6,781 chainNetRn6,824 chainNetRn6,835 chainNetRn6,843 chainNetRn6,848 chainNetRn6,871 chainNetRn6,880 chainNetRn6Viewchain,1 chainNetRn6Viewchain,8 chainNetRn6Viewnet,8 chainRn6,2 chainRn6,28 chainRn6,58 chainRn6,61 chainRn6,122 chainRn6,275 chainRn6,318 chainRn6,413 chainRn6,468 chainRn6,572 chainRn6,778 chainRn6,821 chainRn6,832 chainRn6,840 chainRn6,845 chainRn6,868 chainRn6,877 netRn6,28 netRn6,58 netRn6,61 netRn6,122 netRn6,275 netRn6,318 netRn6,413 netRn6,468 netRn6,572 netRn6,778 netRn6,821 netRn6,832 netRn6,840 netRn6,845 netRn6,868 netRn6,877 transMapV5,138 uniprot,290 chained chainRn6,9 chainnet chainNetRn6,798 chainNetRn6,1003 chainRn6,795 chainRn6,1000 netRn6,795 netRn6,1000 chains chainNetRn6,201 chainNetRn6,213 chainNetRn6,224 chainNetRn6,326 chainNetRn6,365 chainNetRn6,398 chainNetRn6,403 chainNetRn6,425 chainNetRn6,437 chainNetRn6,444 chainNetRn6,501 chainNetRn6,671 chainNetRn6,686 chainNetRn6,700 chainNetRn6,769 chainNetRn6,790 chainNetRn6,805 chainNetRn6,865 chainNetRn6,896 chainNetRn6,991 chainRn6,198 chainRn6,210 chainRn6,221 chainRn6,323 chainRn6,362 chainRn6,395 chainRn6,400 chainRn6,422 chainRn6,434 chainRn6,441 chainRn6,498 chainRn6,668 chainRn6,683 chainRn6,697 chainRn6,766 chainRn6,787 chainRn6,802 chainRn6,862 chainRn6,893 chainRn6,988 netRn6,198 netRn6,210 netRn6,221 netRn6,323 netRn6,362 netRn6,395 netRn6,400 netRn6,422 netRn6,434 netRn6,441 netRn6,498 netRn6,668 netRn6,683 netRn6,697 netRn6,766 netRn6,787 netRn6,802 netRn6,862 netRn6,893 netRn6,988 transMapEnsemblV5,80 transMapEnsemblV5,198 transMapEnsemblV5,212 transMapEnsemblV5,258 transMapEnsemblV5,283 transMapEnsemblV5,331 transMapEnsemblV5,513 transMapEstV5,49 transMapEstV5,167 transMapEstV5,181 transMapEstV5,227 transMapEstV5,252 transMapEstV5,300 transMapEstV5,482 transMapRefSeqV5,49 transMapRefSeqV5,167 transMapRefSeqV5,181 transMapRefSeqV5,227 transMapRefSeqV5,252 transMapRefSeqV5,300 transMapRefSeqV5,482 transMapRnaV5,49 transMapRnaV5,167 transMapRnaV5,181 transMapRnaV5,227 transMapRnaV5,252 transMapRnaV5,300 transMapRnaV5,482 transMapV5,50 transMapV5,87 transMapV5,273 transMapV5,287 transMapV5,333 transMapV5,358 transMapV5,406 transMapV5,588 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 est,125 intronEst,206 mrna,71 refSeqComposite,909 refSeqComposite,923 changed rmsk,285 uniprot,1382 characteristic est,330 intronEst,411 mrna,276 check chainNetRn6,348 chainRn6,345 netRn6,345 check-box refSeqComposite,733 checkbox uniprot,231 chen ensGene,176 chiaromonte chainNetRn6,1036 chainRn6,1033 netRn6,1033 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 est,286 est,325 intronEst,367 intronEst,406 mrna,232 mrna,271 uniprot,657 chosen est,348 intronEst,429 mrna,294 refSeqComposite,538 chr16 refSeqComposite,1558 chr4 chainNetRn6,380 chainRn6,377 netRn6,377 chr6 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,159 chrom refSeqComposite,1557 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1819 chromosome chainNetRn6,254 chainNetRn6,335 chainNetRn6,360 chainNetRn6,368 chainNetRn6,378 chainNetRn6,387 chainNetRn6,534 chainNetRn6,549 chainNetRn6,565 chainNetRn6,634 chainNetRn6,640 chainRn6,251 chainRn6,332 chainRn6,357 chainRn6,365 chainRn6,375 chainRn6,384 chainRn6,531 chainRn6,546 chainRn6,562 chainRn6,631 chainRn6,637 cytoBandIdeo,1 gap,130 netRn6,251 netRn6,332 netRn6,357 netRn6,365 netRn6,375 netRn6,384 netRn6,531 netRn6,546 netRn6,562 netRn6,631 netRn6,637 ucscToINSDC,20 ucscToRefSeq,15 uniprot,1416 chromosome-based chainNetRn6,328 chainRn6,325 netRn6,325 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 clark ensGene,178 est,751 intronEst,835 mrna,468 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 ucscToRefSeq,46 cleaved uniprot,249 click chainNetRn6,461 chainNetRn6,475 chainRn6,458 chainRn6,472 gc5BaseBw,56 netRn6,458 netRn6,472 refSeqComposite,751 refSeqComposite,773 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEstV5,105 transMapEstV5,119 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRnaV5,105 transMapRnaV5,119 transMapV5,211 transMapV5,225 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 clinical refSeqComposite,585 clipped nestedRepeats,224 cloned est,466 intronEst,547 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 clusters refSeqComposite,412 cm refSeqComposite,1763 xenoRefGene,333 code refSeqComposite,1518 transMapEnsemblV5,624 transMapEnsemblV5,638 transMapEstV5,593 transMapEstV5,607 transMapRefSeqV5,593 transMapRefSeqV5,607 transMapRnaV5,593 transMapRnaV5,607 transMapV5,699 transMapV5,713 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding refSeqComposite,1084 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon genscan,100 genscan,122 mrna,332 mrna,357 refSeqComposite,720 refSeqComposite,814 refSeqComposite,821 refSeqComposite,836 refSeqComposite,866 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons genscan,89 genscan,93 refSeqComposite,841 refSeqComposite,848 xenoRefGene,165 xenoRefGene,172 cognate transMapEnsemblV5,180 transMapEstV5,149 transMapRefSeqV5,149 transMapRnaV5,149 transMapV5,255 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collaborator refSeqComposite,647 collaborators refSeqComposite,691 collapsed nestedRepeats,173 collection refSeqComposite,32 xenoRefGene,33 color chainNetRn6,356 chainRn6,353 est,131 est,327 genscan,86 genscan,96 intronEst,212 intronEst,408 mrna,77 mrna,273 netRn6,353 refSeqComposite,607 refSeqComposite,630 refSeqComposite,845 rmsk,207 xenoRefGene,58 xenoRefGene,169 coloration gold,94 colored chainNetRn6,331 chainRn6,328 est,434 intronEst,515 mrna,373 netRn6,328 transMapEnsemblV5,146 transMapEstV5,115 transMapRefSeqV5,115 transMapRnaV5,115 transMapV5,221 uniprot,160 uniprot,176 coloring chainNetRn6,347 chainRn6,344 est,421 genscan,116 intronEst,502 mrna,333 mrna,360 netRn6,344 refSeqComposite,815 refSeqComposite,822 refSeqComposite,860 transMapEnsemblV5,115 transMapEstV5,84 transMapRefSeqV5,84 transMapRnaV5,84 transMapV5,190 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors refSeqComposite,837 xenoRefGene,81 xenoRefGene,161 column nestedRepeats,107 refSeqComposite,1428 refSeqComposite,1439 columns transMapEnsemblV5,553 transMapEstV5,522 transMapRefSeqV5,522 transMapRnaV5,522 transMapV5,628 combination est,289 intronEst,370 mrna,235 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 refSeqComposite,1549 refSeqComposite,1613 transMapEnsemblV5,256 transMapEstV5,225 transMapRefSeqV5,225 transMapRnaV5,225 transMapV5,331 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainNetRn6,14 chainNetRn6Viewchain,12 chainNetRn6Viewnet,12 chainRn6,11 netRn6,11 transMapEnsemblV5,744 transMapEnsemblV5,799 transMapEstV5,713 transMapEstV5,768 transMapRefSeqV5,713 transMapRefSeqV5,768 transMapRnaV5,713 transMapRnaV5,768 transMapV5,819 transMapV5,874 compare mrna,342 refSeqComposite,831 transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 xenoRefGene,155 compared transMapV5,154 comparison genscan,109 uniprot,1260 compiled refSeqComposite,1514 transMapEnsemblV5,620 transMapEstV5,589 transMapRefSeqV5,589 transMapRnaV5,589 transMapV5,695 uniprot,1771 complete genscan,213 completely refSeqComposite,813 uniprot,1464 xenoRefGene,137 complex chainNetRn6,169 chainRn6,166 netRn6,166 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,136 composed uniprot,1396 composite refSeqComposite,16 refSeqComposite,149 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,812 transMapEstV5,781 transMapRefSeqV5,781 transMapRnaV5,781 transMapV5,887 computational genscan,196 uniprot,51 computed transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 comstock transMapEnsemblV5,725 transMapEstV5,694 transMapRefSeqV5,694 transMapRnaV5,694 transMapV5,800 concerning refSeqComposite,126 conditional augustusGene,118 configuration chainNetRn6,320 chainRn6,317 est,49 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 intronEst,133 mrna,30 nestedRepeats,114 netRn6,317 refSeqComposite,144 rmsk,138 transMapEnsemblV5,95 transMapEstV5,64 transMapRefSeqV5,64 transMapRnaV5,64 transMapV5,170 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,46 configured est,383 gc5BaseBw,42 intronEst,464 mrna,329 refSeqComposite,730 transMapEnsemblV5,111 transMapEstV5,80 transMapRefSeqV5,80 transMapRnaV5,80 transMapV5,186 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,232 transMapEstV5,201 transMapRefSeqV5,201 transMapRnaV5,201 transMapV5,307 considerable est,640 intronEst,721 considered intronEst,59 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 refSeqComposite,1218 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult est,220 intronEst,301 mrna,166 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainNetRn6,897 chainRn6,894 netRn6,894 refSeqComposite,1142 containing refSeqComposite,1658 transMapEnsemblV5,548 transMapEstV5,517 transMapRefSeqV5,517 transMapRnaV5,517 transMapV5,623 contains est,245 gap,118 intronEst,326 mrna,191 refSeqComposite,152 refSeqComposite,872 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,142 contamination est,628 intronEst,99 intronEst,709 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,82 contigs gap,85 gold,74 gold,99 gold,116 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refSeqComposite,734 xenoRefGene,92 convenience uniprot,404 conventions chainNetRn6,318 chainRn6,315 est,47 est,55 genscan,62 genscan,70 intronEst,131 intronEst,139 mrna,28 mrna,36 nestedRepeats,112 netRn6,315 refSeqComposite,142 refSeqComposite,453 refSeqComposite,601 rmsk,136 transMapEnsemblV5,93 transMapEnsemblV5,101 transMapEstV5,62 transMapEstV5,70 transMapRefSeqV5,62 transMapRefSeqV5,70 transMapRnaV5,62 transMapRnaV5,70 transMapV5,168 transMapV5,176 uniprot,447 xenoRefGene,44 xenoRefGene,52 converted chainNetRn6,611 chainRn6,608 netRn6,608 refSeqComposite,1174 refSeqComposite,1588 uniprot,1477 uniprot,1760 coordinates refSeqComposite,37 refSeqComposite,68 uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refSeqComposite,121 corresponding transMapEnsemblV5,259 transMapEstV5,228 transMapRefSeqV5,228 transMapRnaV5,228 transMapV5,334 corresponds est,228 intronEst,309 mrna,174 could refSeqComposite,969 refSeqComposite,1545 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,132 counts gold,143 cover est,561 intronEst,642 coverage uniprot,1485 covered chainNetRn6,820 chainRn6,817 gap,25 gold,27 netRn6,817 cow transMapEnsemblV5,451 transMapEstV5,420 transMapRefSeqV5,420 transMapRnaV5,420 transMapV5,526 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create refSeqComposite,310 windowmaskerSdust,48 created chainNetRn6,995 chainRn6,992 microsat,89 netRn6,992 refSeqComposite,102 refSeqComposite,1153 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainNetRn6,645 chainRn6,642 netRn6,642 credits augustusGene,247 chainNetRn6,921 chainRn6,918 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 est,725 gc5BaseBw,71 genscan,169 intronEst,809 microsat,104 mrna,441 nestedRepeats,302 netRn6,918 refSeqComposite,1711 rmsk,325 simpleRepeat,66 transMapEnsemblV5,676 transMapEstV5,645 transMapRefSeqV5,645 transMapRnaV5,645 transMapV5,751 ucscToINSDC,42 ucscToRefSeq,36 uniprot,1938 xenoRefGene,280 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 est,303 est,321 est,359 est,377 intronEst,384 intronEst,402 intronEst,440 intronEst,458 mrna,249 mrna,267 mrna,305 mrna,323 transMapEnsemblV5,359 transMapEstV5,328 transMapRefSeqV5,328 transMapRnaV5,328 transMapV5,434 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainNetRn6,971 chainNetRn6,1016 chainRn6,968 chainRn6,1013 netRn6,968 netRn6,1013 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 curated ncbiRefSeq,6 ncbiRefSeqCurated,2 ncbiRefSeqCurated,6 refSeqComposite,88 refSeqComposite,202 refSeqComposite,210 refSeqComposite,251 refSeqComposite,315 refSeqComposite,400 refSeqComposite,422 refSeqComposite,471 refSeqComposite,523 refSeqComposite,556 refSeqComposite,591 refSeqComposite,1413 refSeqComposite,1673 refSeqComposite,1725 refSeqComposite,1803 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current est,163 intronEst,244 mrna,109 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,79 refSeqComposite,475 curwen ensGene,184 cutoff refSeqComposite,942 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainNetRn6,1063 chainNetRn6,1107 chainRn6,1060 chainRn6,1104 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 genscan,192 netRn6,1060 netRn6,1104 transMapEnsemblV5,764 transMapEnsemblV5,798 transMapEstV5,733 transMapEstV5,767 transMapRefSeqV5,733 transMapRefSeqV5,767 transMapRnaV5,733 transMapRnaV5,767 transMapV5,839 transMapV5,873 d23-6 est,796 intronEst,880 mrna,513 d36-42 est,770 intronEst,854 mrna,487 d501-4 refSeqComposite,1821 xenoRefGene,391 d71-5 uniprot,2005 d756-63 refSeqComposite,1787 xenoRefGene,357 da est,748 est,776 intronEst,832 intronEst,860 mrna,465 mrna,493 dark refSeqComposite,625 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,148 darkly est,69 mrna,50 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 est,735 gap,97 gc5BaseBw,73 intronEst,819 microsat,47 mrna,452 nestedRepeats,263 nestedRepeats,280 refSeqComposite,154 refSeqComposite,656 refSeqComposite,1157 refSeqComposite,1163 refSeqComposite,1290 refSeqComposite,1294 refSeqComposite,1316 refSeqComposite,1368 refSeqComposite,1653 refSeqComposite,1719 rmsk,126 rmsk,287 transMapEnsemblV5,518 transMapEnsemblV5,522 transMapEnsemblV5,536 transMapEnsemblV5,573 transMapEnsemblV5,577 transMapEnsemblV5,691 transMapEstV5,487 transMapEstV5,491 transMapEstV5,505 transMapEstV5,542 transMapEstV5,546 transMapEstV5,660 transMapRefSeqV5,487 transMapRefSeqV5,491 transMapRefSeqV5,505 transMapRefSeqV5,542 transMapRefSeqV5,546 transMapRefSeqV5,660 transMapRnaV5,487 transMapRnaV5,491 transMapRnaV5,505 transMapRnaV5,542 transMapRnaV5,546 transMapRnaV5,660 transMapV5,593 transMapV5,597 transMapV5,611 transMapV5,648 transMapV5,652 transMapV5,766 ucscToINSDC,34 ucscToINSDC,44 ucscToRefSeq,28 ucscToRefSeq,38 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,36 xenoRefGene,290 database chainNetRn6,987 chainRn6,984 ensGene,193 est,768 est,794 intronEst,852 intronEst,878 mrna,485 mrna,511 nestedRepeats,345 netRn6,984 refSeqComposite,564 refSeqComposite,1403 refSeqComposite,1785 refSeqComposite,1806 refSeqComposite,1819 rmsk,125 rmsk,368 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,241 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 ucscToRefSeq,25 ucscToRefSeq,35 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,615 est,742 intronEst,103 intronEst,696 intronEst,826 mrna,459 refSeqComposite,279 refSeqComposite,426 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 dataset refSeqComposite,532 david chainNetRn6,981 chainRn6,978 netRn6,978 davis transMapEnsemblV5,727 transMapEstV5,696 transMapRefSeqV5,696 transMapRnaV5,696 transMapV5,802 de augustusGene,303 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec gap,15 gold,17 nestedRepeats,389 nestedRepeats,411 rmsk,412 rmsk,434 transMapEnsemblV5,749 transMapEnsemblV5,815 transMapEstV5,718 transMapEstV5,784 transMapRefSeqV5,718 transMapRefSeqV5,784 transMapRnaV5,718 transMapRnaV5,784 transMapV5,824 transMapV5,890 default chainNetRn6,324 chainRn6,321 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netRn6,321 refSeqComposite,766 refSeqComposite,1040 refSeqComposite,1067 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined refSeqComposite,627 uniprot,305 uniprot,1387 definition gap,40 gold,42 degraded est,530 intronEst,611 degree est,625 intronEst,706 deletion chainNetRn6,152 chainNetRn6,1068 chainRn6,149 chainRn6,1065 est,443 intronEst,524 mrna,382 netRn6,149 netRn6,1065 refSeqComposite,950 refSeqComposite,1046 refSeqComposite,1073 rmsk,220 deletions chainNetRn6,120 chainNetRn6,184 chainRn6,117 chainRn6,181 netRn6,117 netRn6,181 delivered gap,52 gold,51 dense est,61 gold,68 intronEst,145 mrna,42 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,72 windowmaskerSdust,15 deposited est,602 intronEst,683 deprecated uniprot,1044 derived chainNetRn6,771 chainRn6,768 netRn6,768 uniprot,830 described chainNetRn6,778 chainRn6,775 genscan,161 nestedRepeats,60 nestedRepeats,338 netRn6,775 refSeqComposite,1642 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,61 gold,60 describing refSeqComposite,255 description augustusGene,12 chainNetRn6,16 chainNetRn6,783 chainRn6,13 chainRn6,780 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 est,12 est,112 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 intronEst,13 intronEst,193 microsat,10 mrna,12 mrna,58 nestedRepeats,14 netRn6,13 netRn6,780 refSeqComposite,11 refSeqComposite,741 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,234 transMapEstV5,12 transMapEstV5,203 transMapRefSeqV5,13 transMapRefSeqV5,203 transMapRnaV5,13 transMapRnaV5,203 transMapV5,11 transMapV5,309 ucscToINSDC,13 ucscToRefSeq,8 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed refSeqComposite,1441 uniprot,1355 desired est,288 intronEst,369 mrna,234 destination transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 destined uniprot,244 destuniq transMapEnsemblV5,436 transMapEstV5,405 transMapRefSeqV5,405 transMapRnaV5,405 transMapV5,511 detail genscan,164 detailed augustusGene,90 chainNetRn6,467 chainNetRn6,486 chainRn6,464 chainRn6,483 nestedRepeats,70 netRn6,464 netRn6,483 rmsk,37 uniprot,692 details refSeqComposite,95 refSeqComposite,1126 rmsk,119 transMapEnsemblV5,236 transMapEstV5,205 transMapRefSeqV5,205 transMapRnaV5,205 transMapV5,311 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 determine transMapV5,91 determined windowmaskerSdust,19 determining chainNetRn6,491 chainRn6,488 netRn6,488 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainNetRn6,928 chainNetRn6,963 chainNetRn6,1009 chainRn6,925 chainRn6,960 chainRn6,1006 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netRn6,925 netRn6,960 netRn6,1006 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diagnostics refSeqComposite,586 diekhans augustusGene,288 transMapEnsemblV5,683 transMapEnsemblV5,716 transMapEnsemblV5,759 transMapEnsemblV5,791 transMapEstV5,652 transMapEstV5,685 transMapEstV5,728 transMapEstV5,760 transMapRefSeqV5,652 transMapRefSeqV5,685 transMapRefSeqV5,728 transMapRefSeqV5,760 transMapRnaV5,652 transMapRnaV5,685 transMapRnaV5,728 transMapRnaV5,760 transMapV5,758 transMapV5,791 transMapV5,834 transMapV5,866 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,406 intronEst,487 refSeqComposite,288 uniprot,746 uniprot,1131 difference uniprot,1251 differences ncbiRefSeqGenomicDiff,3 refSeqComposite,64 refSeqComposite,461 refSeqComposite,892 refSeqComposite,961 uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainNetRn6,566 chainRn6,563 ensGene,22 gc5BaseBw,50 genscan,54 netRn6,563 refSeqComposite,99 refSeqComposite,134 refSeqComposite,874 rmsk,149 uniprot,634 differing refSeqComposite,153 difficult transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 diffs ncbiRefSeqGenomicDiff,2 refSeqComposite,458 refSeqComposite,870 refSeqComposite,1200 refSeqComposite,1375 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direction est,81 est,99 intronEst,162 intronEst,180 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 refSeqComposite,1531 refSeqComposite,1580 refSeqComposite,1600 rmsk,134 discarded chainNetRn6,697 chainRn6,694 netRn6,694 refSeqComposite,1248 transMapEnsemblV5,383 transMapEstV5,352 transMapRefSeqV5,352 transMapRnaV5,352 transMapV5,458 xenoRefGene,238 discovery transMapEnsemblV5,738 transMapEstV5,707 transMapRefSeqV5,707 transMapRnaV5,707 transMapV5,813 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainNetRn6,246 chainNetRn6,317 chainNetRn6,362 chainNetRn6,392 chainNetRn6,451 chainNetRn6,480 chainNetRn6,509 chainNetRn6,985 chainRn6,243 chainRn6,314 chainRn6,359 chainRn6,389 chainRn6,448 chainRn6,477 chainRn6,506 chainRn6,982 est,46 est,54 est,62 est,127 est,154 est,184 est,329 est,353 est,369 est,385 est,395 est,444 genscan,61 genscan,69 genscan,104 gold,131 intronEst,118 intronEst,130 intronEst,138 intronEst,146 intronEst,208 intronEst,235 intronEst,265 intronEst,410 intronEst,434 intronEst,450 intronEst,466 intronEst,476 intronEst,525 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,275 mrna,299 mrna,315 mrna,331 mrna,383 nestedRepeats,111 netRn6,243 netRn6,314 netRn6,359 netRn6,389 netRn6,448 netRn6,477 netRn6,506 netRn6,982 refSeqComposite,141 refSeqComposite,452 refSeqComposite,600 refSeqComposite,721 refSeqComposite,779 refSeqComposite,835 refSeqComposite,1183 refSeqComposite,1447 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEnsemblV5,113 transMapEstV5,61 transMapEstV5,69 transMapEstV5,82 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRefSeqV5,82 transMapRnaV5,61 transMapRnaV5,69 transMapRnaV5,82 transMapV5,167 transMapV5,175 transMapV5,188 uniprot,446 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainNetRn6,428 chainNetRn6,525 chainNetRn6,702 chainRn6,425 chainRn6,522 chainRn6,699 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 intronEst,805 nestedRepeats,124 nestedRepeats,217 netRn6,425 netRn6,522 netRn6,699 refSeqComposite,1119 xenoRefGene,204 displays chainNetRn6,127 chainRn6,124 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netRn6,124 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant est,585 intronEst,666 transMapEnsemblV5,270 transMapEstV5,239 transMapRefSeqV5,239 transMapRnaV5,239 transMapV5,64 transMapV5,345 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,85 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainNetRn6,920 chainRn6,917 nestedRepeats,212 netRn6,917 transMapV5,152 divided uniprot,56 dj est,756 est,780 intronEst,840 intronEst,864 mrna,473 mrna,497 dl est,784 intronEst,868 mrna,501 dna chainNetRn6,1029 chainRn6,1026 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netRn6,1026 refSeqComposite,1085 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 refSeqComposite,390 transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 uniprot,168 uniprot,1129 doc rmsk,132 document gap,58 gold,57 documentation gap,30 gold,32 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainNetRn6,135 chainNetRn6,165 chainRn6,132 chainRn6,162 netRn6,132 netRn6,162 refSeqComposite,1020 double-lined chainNetRn6,226 chainRn6,223 netRn6,223 double-sided chainNetRn6,109 chainRn6,106 netRn6,106 down ensGene,186 download ensGene,93 ensGene,143 refSeqComposite,1566 refSeqComposite,1709 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 uniprot,1744 uniprot,1983 downloaded refSeqComposite,1166 refSeqComposite,1331 refSeqComposite,1520 transMapEnsemblV5,557 transMapEnsemblV5,626 transMapEstV5,526 transMapEstV5,595 transMapRefSeqV5,526 transMapRefSeqV5,595 transMapRnaV5,526 transMapRnaV5,595 transMapV5,632 transMapV5,701 ucscToINSDC,36 ucscToRefSeq,30 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,636 transMapEstV5,605 transMapRefSeqV5,605 transMapRnaV5,605 transMapV5,711 uniprot,1787 downloads ensGene,74 ensGene,85 refSeqComposite,1334 refSeqComposite,1350 refSeqComposite,1489 refSeqComposite,1579 refSeqComposite,1604 refSeqComposite,1683 rmsk,76 uniprot,1698 downstream refSeqComposite,1458 dr refSeqComposite,1797 xenoRefGene,367 drastically intronEst,105 drawn gap,108 gold,127 draws uniprot,1532 drosophila augustusGene,213 due chainNetRn6,149 chainNetRn6,219 chainNetRn6,231 chainRn6,146 chainRn6,216 chainRn6,228 netRn6,146 netRn6,216 netRn6,228 refSeqComposite,979 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainNetRn6,1067 chainRn6,1064 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netRn6,1064 duplications transMapEnsemblV5,312 transMapEnsemblV5,510 transMapEstV5,281 transMapEstV5,479 transMapRefSeqV5,281 transMapRefSeqV5,479 transMapRnaV5,281 transMapRnaV5,479 transMapV5,387 transMapV5,585 during chainNetRn6,825 chainRn6,822 netRn6,822 dynamic chainNetRn6,658 chainRn6,655 netRn6,655 e ensGene,173 uniprot,2021 e.g chainNetRn6,379 chainRn6,376 netRn6,376 refSeqComposite,1136 uniprot,398 uniprot,467 e247 transMapEnsemblV5,818 transMapEstV5,787 transMapRefSeqV5,787 transMapRnaV5,787 transMapV5,893 each chainNetRn6,264 chainRn6,261 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 est,217 genscan,99 intronEst,298 mrna,163 nestedRepeats,120 netRn6,261 refSeqComposite,542 refSeqComposite,1430 transMapEnsemblV5,389 transMapEnsemblV5,403 transMapEnsemblV5,412 transMapEnsemblV5,431 transMapEstV5,358 transMapEstV5,372 transMapEstV5,381 transMapEstV5,400 transMapRefSeqV5,358 transMapRefSeqV5,372 transMapRefSeqV5,381 transMapRefSeqV5,400 transMapRnaV5,358 transMapRnaV5,372 transMapRnaV5,381 transMapRnaV5,400 transMapV5,464 transMapV5,478 transMapV5,487 transMapV5,506 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,600 intronEst,681 either chainNetRn6,132 chainRn6,129 gap,87 netRn6,129 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 elephant chainNetRn6,77 chainNetRn6,104 chainNetRn6,162 chainNetRn6,209 chainNetRn6,276 chainNetRn6,284 chainNetRn6,585 chainNetRn6,638 chainRn6,74 chainRn6,101 chainRn6,159 chainRn6,206 chainRn6,273 chainRn6,281 chainRn6,582 chainRn6,635 est,1 est,4 est,18 est,646 gap,17 gold,19 intronEst,3 intronEst,19 intronEst,126 intronEst,727 mrna,1 mrna,4 mrna,19 mrna,388 netRn6,74 netRn6,101 netRn6,159 netRn6,206 netRn6,273 netRn6,281 netRn6,582 netRn6,635 refSeqComposite,19 refSeqComposite,442 refSeqComposite,464 refSeqComposite,498 refSeqComposite,1234 transMapEnsemblV5,90 transMapEnsemblV5,203 transMapEnsemblV5,334 transMapEstV5,59 transMapEstV5,172 transMapEstV5,303 transMapRefSeqV5,59 transMapRefSeqV5,172 transMapRefSeqV5,303 transMapRnaV5,59 transMapRnaV5,172 transMapRnaV5,303 transMapV5,60 transMapV5,278 transMapV5,409 xenoRefGene,24 xenoRefGene,224 eliminate est,673 intronEst,754 eliminating intronEst,111 elsevier genscan,202 em windowmaskerSdust,93 emerged chainNetRn6,831 chainRn6,828 est,570 intronEst,651 netRn6,828 end est,520 est,538 est,548 est,589 intronEst,601 intronEst,619 intronEst,629 intronEst,670 refSeqComposite,1054 refSeqComposite,1561 rmsk,245 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,92 enough refSeqComposite,1028 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,592 transMapEnsemblV5,708 transMapEstV5,561 transMapEstV5,677 transMapRefSeqV5,561 transMapRefSeqV5,677 transMapRnaV5,561 transMapRnaV5,677 transMapV5,667 transMapV5,783 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,385 transMapEstV5,354 transMapRefSeqV5,354 transMapRnaV5,354 transMapV5,460 enter chainNetRn6,373 chainRn6,370 netRn6,370 entered est,254 est,264 intronEst,335 intronEst,345 mrna,200 mrna,210 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 entries refSeqComposite,1359 ermolaeva refSeqComposite,1760 xenoRefGene,330 errors refSeqComposite,953 especially est,155 intronEst,236 mrna,101 est est,11 est,87 est,183 est,451 est,614 est,635 est,687 est,733 intronEst,12 intronEst,62 intronEst,77 intronEst,102 intronEst,128 intronEst,168 intronEst,264 intronEst,532 intronEst,695 intronEst,716 intronEst,768 intronEst,817 mrna,11 refSeqComposite,264 refSeqComposite,364 transMapEnsemblV5,689 transMapEstV5,4 transMapEstV5,18 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 established refSeqComposite,688 ests est,3 est,6 est,23 est,29 est,193 est,298 est,313 est,354 est,372 est,490 est,535 est,546 est,648 est,675 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,115 intronEst,121 intronEst,156 intronEst,274 intronEst,379 intronEst,394 intronEst,435 intronEst,453 intronEst,571 intronEst,616 intronEst,627 intronEst,729 intronEst,756 transMapEnsemblV5,177 transMapEnsemblV5,601 transMapEstV5,2 transMapEstV5,146 transMapEstV5,570 transMapRefSeqV5,146 transMapRefSeqV5,570 transMapRnaV5,146 transMapRnaV5,570 transMapV5,252 transMapV5,676 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 refSeqComposite,1770 transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 xenoRefGene,340 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even est,609 est,616 intronEst,690 intronEst,697 uniprot,136 every chainNetRn6,280 chainRn6,277 netRn6,277 refSeqComposite,478 uniprot,1571 evidence intronEst,65 refSeqComposite,261 refSeqComposite,276 evolution chainNetRn6,1064 chainRn6,1061 netRn6,1061 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew est,760 intronEst,844 mrna,477 ewing transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 exact uniprot,1622 uniprot,1747 example est,186 est,239 intronEst,267 intronEst,320 mrna,132 mrna,185 refSeqComposite,1535 rmsk,256 transMapEnsemblV5,448 transMapEnsemblV5,660 transMapEstV5,417 transMapEstV5,629 transMapRefSeqV5,417 transMapRefSeqV5,629 transMapRnaV5,417 transMapRnaV5,629 transMapV5,97 transMapV5,523 transMapV5,735 uniprot,1450 uniprot,1811 uniprot,1901 examples refSeqComposite,406 except refSeqComposite,41 uniprot,508 exclude est,134 est,339 est,345 intronEst,215 intronEst,420 intronEst,426 mrna,80 mrna,285 mrna,291 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exist chainNetRn6,412 chainRn6,409 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,97 netRn6,409 refSeqComposite,293 exists refSeqComposite,330 exon augustusGene,86 exons chainNetRn6,52 chainRn6,49 genscan,44 netRn6,49 transMapEnsemblV5,742 transMapEstV5,711 transMapRefSeqV5,711 transMapRnaV5,711 transMapV5,817 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expanded refSeqComposite,665 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense intronEst,109 transMapEnsemblV5,297 transMapEstV5,266 transMapRefSeqV5,266 transMapRnaV5,266 transMapV5,372 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 refSeqComposite,1307 uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,275 mrna,140 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,552 transMapEstV5,521 transMapRefSeqV5,521 transMapRnaV5,521 transMapV5,627 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extract refSeqComposite,1537 extracted nestedRepeats,23 f chainNetRn6,1037 chainRn6,1034 gold,155 netRn6,1034 refSeqComposite,1757 xenoRefGene,327 facilitate genscan,106 uniprot,1852 factor est,231 intronEst,312 mrna,177 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 refSeqComposite,140 rmsk,321 transMapEnsemblV5,579 transMapEstV5,548 transMapRefSeqV5,548 transMapRnaV5,548 transMapV5,654 uniprot,1839 far uniprot,599 farrell refSeqComposite,1762 xenoRefGene,332 fasta refSeqComposite,1663 feature chainNetRn6,250 chainRn6,247 est,389 genscan,129 intronEst,470 mrna,335 netRn6,247 refSeqComposite,823 refSeqComposite,856 transMapEnsemblV5,117 transMapEstV5,86 transMapRefSeqV5,86 transMapRnaV5,86 transMapV5,192 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,147 xenoRefGene,180 features refSeqComposite,724 transMapEnsemblV5,654 transMapEstV5,623 transMapRefSeqV5,623 transMapRnaV5,623 transMapV5,729 uniprot,694 uniprot,1805 xenoRefGene,83 fed chainNetRn6,623 chainRn6,620 netRn6,620 feedback refSeqComposite,107 uniprot,1445 uniprot,1961 fewer transMapV5,160 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,51 gap,67 gold,50 gold,66 refSeqComposite,1171 refSeqComposite,1381 refSeqComposite,1392 refSeqComposite,1657 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 refSeqComposite,1164 refSeqComposite,1482 transMapEnsemblV5,547 transMapEnsemblV5,581 transMapEstV5,516 transMapEstV5,550 transMapRefSeqV5,516 transMapRefSeqV5,550 transMapRnaV5,516 transMapRnaV5,550 transMapV5,622 transMapV5,656 uniprot,1863 fill chainNetRn6,855 chainNetRn6,888 chainRn6,852 chainRn6,885 netRn6,852 netRn6,885 filled chainNetRn6,421 chainNetRn6,440 chainNetRn6,837 chainNetRn6,910 chainRn6,418 chainRn6,437 chainRn6,834 chainRn6,907 netRn6,418 netRn6,437 netRn6,834 netRn6,907 filter chainNetRn6,385 chainRn6,382 est,119 est,168 est,181 est,190 est,237 est,278 est,302 est,320 est,358 est,376 genscan,82 intronEst,200 intronEst,249 intronEst,262 intronEst,271 intronEst,318 intronEst,359 intronEst,383 intronEst,401 intronEst,439 intronEst,457 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,224 mrna,248 mrna,266 mrna,304 mrna,322 netRn6,382 uniprot,187 uniprot,664 filtered est,341 intronEst,422 mrna,287 transMapEnsemblV5,77 transMapEnsemblV5,352 transMapEstV5,46 transMapEstV5,321 transMapRefSeqV5,46 transMapRefSeqV5,321 transMapRnaV5,46 transMapRnaV5,321 transMapV5,45 transMapV5,427 uniprot,1480 uniprot,1499 filtering est,280 intronEst,361 mrna,226 transMapEnsemblV5,238 transMapEnsemblV5,306 transMapEstV5,207 transMapEstV5,275 transMapRefSeqV5,207 transMapRefSeqV5,275 transMapRnaV5,207 transMapRnaV5,275 transMapV5,313 transMapV5,381 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainNetRn6,667 chainRn6,664 netRn6,664 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainNetRn6,291 chainRn6,288 netRn6,288 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 finds transMapV5,159 finger uniprot,327 finished gold,157 transMapEnsemblV5,363 transMapEstV5,332 transMapRefSeqV5,332 transMapRnaV5,332 transMapV5,438 first chainNetRn6,795 chainRn6,792 netRn6,792 refSeqComposite,1427 uniprot,70 fish augustusGene,201 fit chainNetRn6,815 chainRn6,812 nestedRepeats,175 netRn6,812 refSeqComposite,392 five refSeqComposite,873 refSeqComposite,889 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 follow refSeqComposite,598 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainNetRn6,676 chainRn6,673 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,120 genscan,81 netRn6,673 refSeqComposite,450 refSeqComposite,1548 transMapEnsemblV5,589 transMapEstV5,558 transMapRefSeqV5,558 transMapRnaV5,558 transMapV5,664 windowmaskerSdust,56 follows est,52 genscan,67 intronEst,136 mrna,33 refSeqComposite,895 refSeqComposite,1406 transMapEnsemblV5,98 transMapEnsemblV5,216 transMapEstV5,67 transMapEstV5,185 transMapRefSeqV5,67 transMapRefSeqV5,185 transMapRnaV5,67 transMapRnaV5,185 transMapV5,173 transMapV5,291 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainNetRn6,263 chainNetRn6,279 chainNetRn6,290 chainNetRn6,297 chainNetRn6,498 chainRn6,260 chainRn6,276 chainRn6,287 chainRn6,294 chainRn6,495 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 est,56 est,114 est,185 est,216 est,238 est,411 est,422 est,435 est,483 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,116 intronEst,140 intronEst,195 intronEst,266 intronEst,297 intronEst,319 intronEst,492 intronEst,503 intronEst,516 intronEst,564 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,348 mrna,361 mrna,374 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netRn6,260 netRn6,276 netRn6,287 netRn6,294 netRn6,495 refSeqComposite,42 refSeqComposite,74 refSeqComposite,93 refSeqComposite,108 refSeqComposite,124 refSeqComposite,129 refSeqComposite,236 refSeqComposite,245 refSeqComposite,331 refSeqComposite,395 refSeqComposite,454 refSeqComposite,477 refSeqComposite,541 refSeqComposite,602 refSeqComposite,723 refSeqComposite,747 refSeqComposite,851 refSeqComposite,1182 refSeqComposite,1295 refSeqComposite,1336 refSeqComposite,1446 refSeqComposite,1525 refSeqComposite,1534 refSeqComposite,1665 refSeqComposite,1693 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,102 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,190 transMapEnsemblV5,217 transMapEnsemblV5,235 transMapEnsemblV5,266 transMapEnsemblV5,268 transMapEnsemblV5,286 transMapEnsemblV5,290 transMapEnsemblV5,388 transMapEnsemblV5,402 transMapEnsemblV5,411 transMapEnsemblV5,447 transMapEnsemblV5,523 transMapEnsemblV5,538 transMapEnsemblV5,567 transMapEnsemblV5,631 transMapEnsemblV5,635 transMapEnsemblV5,659 transMapEnsemblV5,802 transMapEstV5,36 transMapEstV5,71 transMapEstV5,99 transMapEstV5,116 transMapEstV5,159 transMapEstV5,186 transMapEstV5,204 transMapEstV5,235 transMapEstV5,237 transMapEstV5,255 transMapEstV5,259 transMapEstV5,357 transMapEstV5,371 transMapEstV5,380 transMapEstV5,416 transMapEstV5,492 transMapEstV5,507 transMapEstV5,536 transMapEstV5,600 transMapEstV5,604 transMapEstV5,628 transMapEstV5,771 transMapRefSeqV5,36 transMapRefSeqV5,71 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,159 transMapRefSeqV5,186 transMapRefSeqV5,204 transMapRefSeqV5,235 transMapRefSeqV5,237 transMapRefSeqV5,255 transMapRefSeqV5,259 transMapRefSeqV5,357 transMapRefSeqV5,371 transMapRefSeqV5,380 transMapRefSeqV5,416 transMapRefSeqV5,492 transMapRefSeqV5,507 transMapRefSeqV5,536 transMapRefSeqV5,600 transMapRefSeqV5,604 transMapRefSeqV5,628 transMapRefSeqV5,771 transMapRnaV5,36 transMapRnaV5,71 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,159 transMapRnaV5,186 transMapRnaV5,204 transMapRnaV5,235 transMapRnaV5,237 transMapRnaV5,255 transMapRnaV5,259 transMapRnaV5,357 transMapRnaV5,371 transMapRnaV5,380 transMapRnaV5,416 transMapRnaV5,492 transMapRnaV5,507 transMapRnaV5,536 transMapRnaV5,600 transMapRnaV5,604 transMapRnaV5,628 transMapRnaV5,771 transMapV5,35 transMapV5,62 transMapV5,96 transMapV5,98 transMapV5,151 transMapV5,177 transMapV5,205 transMapV5,222 transMapV5,265 transMapV5,292 transMapV5,310 transMapV5,341 transMapV5,343 transMapV5,361 transMapV5,365 transMapV5,463 transMapV5,477 transMapV5,486 transMapV5,522 transMapV5,598 transMapV5,613 transMapV5,642 transMapV5,706 transMapV5,710 transMapV5,734 transMapV5,877 ucscToINSDC,45 ucscToRefSeq,39 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainNetRn6,614 chainRn6,611 ensGene,77 ensGene,97 gap,63 gold,62 netRn6,611 refSeqComposite,1172 refSeqComposite,1362 refSeqComposite,1382 refSeqComposite,1408 refSeqComposite,1422 refSeqComposite,1569 refSeqComposite,1583 refSeqComposite,1591 refSeqComposite,1664 transMapEnsemblV5,420 transMapEstV5,389 transMapRefSeqV5,389 transMapRnaV5,389 transMapV5,495 formats refSeqComposite,1181 uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainNetRn6,447 chainRn6,444 netRn6,444 found augustusGene,100 ensGene,139 gold,138 mrna,416 refSeqComposite,1196 refSeqComposite,1395 refSeqComposite,1680 refSeqComposite,1705 transMapEnsemblV5,643 transMapEstV5,612 transMapRefSeqV5,612 transMapRnaV5,612 transMapV5,718 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainNetRn6,515 chainRn6,512 netRn6,512 fragments est,42 gold,4 intronEst,53 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from augustusGene,19 chainNetRn6,181 chainNetRn6,309 chainNetRn6,567 chainNetRn6,590 chainNetRn6,772 chainNetRn6,945 chainNetRn6,977 chainRn6,178 chainRn6,306 chainRn6,564 chainRn6,587 chainRn6,769 chainRn6,942 chainRn6,974 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 est,407 est,455 est,476 est,586 est,604 est,649 est,732 gap,48 genscan,15 gold,3 gold,47 intronEst,488 intronEst,536 intronEst,557 intronEst,667 intronEst,685 intronEst,730 intronEst,816 mrna,7 mrna,449 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netRn6,178 netRn6,306 netRn6,564 netRn6,587 netRn6,769 netRn6,942 netRn6,974 refSeqComposite,5 refSeqComposite,26 refSeqComposite,289 refSeqComposite,295 refSeqComposite,423 refSeqComposite,485 refSeqComposite,843 refSeqComposite,1103 refSeqComposite,1158 refSeqComposite,1167 refSeqComposite,1332 refSeqComposite,1487 refSeqComposite,1515 refSeqComposite,1528 refSeqComposite,1576 refSeqComposite,1597 refSeqComposite,1611 refSeqComposite,1718 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,158 transMapEnsemblV5,558 transMapEnsemblV5,621 transMapEnsemblV5,686 transMapEstV5,27 transMapEstV5,127 transMapEstV5,527 transMapEstV5,590 transMapEstV5,655 transMapRefSeqV5,27 transMapRefSeqV5,127 transMapRefSeqV5,527 transMapRefSeqV5,590 transMapRefSeqV5,655 transMapRnaV5,27 transMapRnaV5,127 transMapRnaV5,527 transMapRnaV5,590 transMapRnaV5,655 transMapV5,26 transMapV5,112 transMapV5,233 transMapV5,633 transMapV5,696 transMapV5,761 ucscToINSDC,25 ucscToINSDC,37 ucscToRefSeq,20 ucscToRefSeq,31 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainNetRn6,244 chainNetRn6,391 chainRn6,241 chainRn6,388 nestedRepeats,118 netRn6,241 netRn6,388 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,280 transMapEstV5,249 transMapRefSeqV5,249 transMapRnaV5,249 transMapV5,355 uniprot,486 uniprot,528 uniprot,540 full-length refSeqComposite,266 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 gc5BaseBw,20 microsat,115 refSeqComposite,904 refSeqComposite,956 refSeqComposite,1080 simpleRepeat,75 g-31-125100-114 chainNetRn6,684 chainRn6,681 netRn6,681 gambiae augustusGene,219 gap chainNetRn6,82 chainNetRn6,92 chainNetRn6,193 chainNetRn6,484 chainNetRn6,496 chainNetRn6,519 chainNetRn6,537 chainNetRn6,552 chainNetRn6,569 chainNetRn6,708 chainNetRn6,839 chainRn6,79 chainRn6,89 chainRn6,190 chainRn6,481 chainRn6,493 chainRn6,516 chainRn6,534 chainRn6,549 chainRn6,566 chainRn6,705 chainRn6,836 est,430 gap,1 gap,2 gap,91 gap,102 gap,115 intronEst,511 mrna,369 netRn6,79 netRn6,89 netRn6,190 netRn6,481 netRn6,493 netRn6,516 netRn6,534 netRn6,549 netRn6,566 netRn6,705 netRn6,836 refSeqComposite,930 refSeqComposite,963 refSeqComposite,1019 refSeqComposite,1021 transMapEnsemblV5,142 transMapEstV5,111 transMapRefSeqV5,111 transMapRnaV5,111 transMapV5,217 gapless chainNetRn6,651 chainRn6,648 netRn6,648 gaps chainNetRn6,88 chainNetRn6,99 chainNetRn6,111 chainNetRn6,145 chainNetRn6,170 chainNetRn6,216 chainNetRn6,227 chainNetRn6,411 chainNetRn6,433 chainNetRn6,460 chainNetRn6,894 chainNetRn6,900 chainRn6,85 chainRn6,96 chainRn6,108 chainRn6,142 chainRn6,167 chainRn6,213 chainRn6,224 chainRn6,408 chainRn6,430 chainRn6,457 chainRn6,891 chainRn6,897 gap,12 gap,43 gap,68 gap,124 gap,126 gold,96 netRn6,85 netRn6,96 netRn6,108 netRn6,142 netRn6,167 netRn6,213 netRn6,224 netRn6,408 netRn6,430 netRn6,457 netRn6,891 netRn6,897 refSeqComposite,933 refSeqComposite,1024 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb refSeqComposite,1553 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 transMapV5,739 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank est,25 est,650 est,761 est,785 intronEst,26 intronEst,731 intronEst,845 intronEst,869 mrna,8 mrna,23 mrna,387 mrna,478 mrna,502 transMapEnsemblV5,172 transMapEnsemblV5,175 transMapEstV5,16 transMapEstV5,141 transMapEstV5,144 transMapRefSeqV5,141 transMapRefSeqV5,144 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,141 transMapRnaV5,144 transMapV5,247 transMapV5,250 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 ncbiRefSeq,17 ncbiRefSeqCurated,15 ncbiRefSeqGenomicDiff,14 ncbiRefSeqOther,17 ncbiRefSeqPredicted,13 ncbiRefSeqPsl,9 refSeqComposite,9 refSeqComposite,109 refSeqComposite,135 refSeqComposite,411 refSeqComposite,544 refSeqComposite,562 refSeqComposite,603 refSeqComposite,771 refSeqComposite,789 refSeqComposite,801 refSeqComposite,832 refSeqComposite,861 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,393 transMapEnsemblV5,776 transMapEstV5,10 transMapEstV5,362 transMapEstV5,745 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,362 transMapRefSeqV5,745 transMapRnaV5,11 transMapRnaV5,362 transMapRnaV5,745 transMapV5,9 transMapV5,17 transMapV5,468 transMapV5,851 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 refSeqComposite,1177 refSeqComposite,1407 refSeqComposite,1582 genepredtogtf refSeqComposite,1594 refSeqComposite,1617 refSeqComposite,1624 general est,532 intronEst,613 generally rmsk,72 uniprot,248 generate est,643 intronEst,724 nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refSeqComposite,484 refSeqComposite,1203 refSeqComposite,1720 rmsk,289 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 est,45 genscan,2 genscan,6 genscan,59 intronEst,56 ncbiRefSeq,5 ncbiRefSeq,15 ncbiRefSeqCurated,5 ncbiRefSeqCurated,13 ncbiRefSeqGenomicDiff,12 ncbiRefSeqOther,15 ncbiRefSeqPredicted,5 ncbiRefSeqPredicted,11 ncbiRefSeqPsl,7 refSeqComposite,4 refSeqComposite,7 refSeqComposite,15 refSeqComposite,24 refSeqComposite,139 refSeqComposite,238 refSeqComposite,432 refSeqComposite,510 refSeqComposite,1215 refSeqComposite,1226 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,171 transMapEnsemblV5,185 transMapEnsemblV5,292 transMapEnsemblV5,806 transMapEstV5,8 transMapEstV5,57 transMapEstV5,140 transMapEstV5,154 transMapEstV5,261 transMapEstV5,775 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,140 transMapRefSeqV5,154 transMapRefSeqV5,261 transMapRefSeqV5,775 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,140 transMapRnaV5,154 transMapRnaV5,261 transMapRnaV5,775 transMapV5,7 transMapV5,58 transMapV5,73 transMapV5,246 transMapV5,260 transMapV5,367 transMapV5,881 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainNetRn6,23 chainNetRn6,79 chainNetRn6,211 chainNetRn6,286 chainNetRn6,299 chainNetRn6,793 chainNetRn6,1114 chainRn6,20 chainRn6,76 chainRn6,208 chainRn6,283 chainRn6,296 chainRn6,790 chainRn6,1111 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 est,28 est,655 est,808 gap,19 gap,21 gold,21 gold,23 gold,151 intronEst,29 intronEst,39 intronEst,736 intronEst,892 mrna,26 mrna,395 mrna,525 ncbiRefSeqGenomicDiff,11 nestedRepeats,405 netRn6,20 netRn6,76 netRn6,208 netRn6,283 netRn6,296 netRn6,790 netRn6,1111 refSeqComposite,57 refSeqComposite,291 refSeqComposite,299 refSeqComposite,308 refSeqComposite,326 refSeqComposite,370 refSeqComposite,444 refSeqComposite,467 refSeqComposite,500 refSeqComposite,881 refSeqComposite,928 refSeqComposite,978 refSeqComposite,1064 refSeqComposite,1077 refSeqComposite,1111 refSeqComposite,1124 refSeqComposite,1186 refSeqComposite,1236 refSeqComposite,1450 refSeqComposite,1739 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,164 transMapEnsemblV5,181 transMapEnsemblV5,206 transMapEnsemblV5,336 transMapEnsemblV5,347 transMapEnsemblV5,408 transMapEnsemblV5,418 transMapEnsemblV5,452 transMapEnsemblV5,475 transMapEnsemblV5,608 transMapEnsemblV5,746 transMapEstV5,34 transMapEstV5,133 transMapEstV5,150 transMapEstV5,175 transMapEstV5,305 transMapEstV5,316 transMapEstV5,377 transMapEstV5,387 transMapEstV5,421 transMapEstV5,444 transMapEstV5,577 transMapEstV5,715 transMapRefSeqV5,34 transMapRefSeqV5,133 transMapRefSeqV5,150 transMapRefSeqV5,175 transMapRefSeqV5,305 transMapRefSeqV5,316 transMapRefSeqV5,377 transMapRefSeqV5,387 transMapRefSeqV5,421 transMapRefSeqV5,444 transMapRefSeqV5,577 transMapRefSeqV5,715 transMapRnaV5,34 transMapRnaV5,133 transMapRnaV5,150 transMapRnaV5,175 transMapRnaV5,305 transMapRnaV5,316 transMapRnaV5,377 transMapRnaV5,387 transMapRnaV5,421 transMapRnaV5,444 transMapRnaV5,577 transMapRnaV5,715 transMapV5,33 transMapV5,85 transMapV5,239 transMapV5,256 transMapV5,281 transMapV5,411 transMapV5,422 transMapV5,483 transMapV5,493 transMapV5,527 transMapV5,550 transMapV5,683 transMapV5,821 ucscToINSDC,18 ucscToRefSeq,13 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,226 xenoRefGene,309 genome-wide refSeqComposite,1502 genome.bed uniprot,1935 uniprot,1937 genomes chainNetRn6,29 chainNetRn6,595 chainNetRn6,1076 chainRn6,26 chainRn6,592 chainRn6,1073 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netRn6,26 netRn6,592 netRn6,1073 refSeqComposite,573 refSeqComposite,1808 rmsk,392 rmsk,406 transMapEnsemblV5,364 transMapEnsemblV5,372 transMapEstV5,333 transMapEstV5,341 transMapRefSeqV5,333 transMapRefSeqV5,341 transMapRnaV5,333 transMapRnaV5,341 transMapV5,439 transMapV5,447 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic chainNetRn6,503 chainNetRn6,1028 chainNetRn6,1044 chainRn6,500 chainRn6,1025 chainRn6,1041 est,91 est,409 est,610 est,721 genscan,92 genscan,218 intronEst,74 intronEst,172 intronEst,490 intronEst,691 intronEst,802 mrna,346 mrna,437 netRn6,500 netRn6,1025 netRn6,1041 refSeqComposite,840 refSeqComposite,908 refSeqComposite,932 refSeqComposite,1023 refSeqComposite,1081 refSeqComposite,1286 transMapEnsemblV5,128 transMapEstV5,97 transMapRefSeqV5,97 transMapRnaV5,97 transMapV5,203 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,164 xenoRefGene,276 genomics chainNetRn6,15 chainNetRn6Viewchain,13 chainNetRn6Viewnet,13 chainRn6,12 netRn6,12 transMapEnsemblV5,745 transMapEnsemblV5,800 transMapEstV5,714 transMapEstV5,769 transMapRefSeqV5,714 transMapRefSeqV5,769 transMapRnaV5,714 transMapRnaV5,769 transMapV5,820 transMapV5,875 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,113 gertz windowmaskerSdust,92 gff refSeqComposite,1170 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 give transMapEnsemblV5,440 transMapEstV5,409 transMapRefSeqV5,409 transMapRnaV5,409 transMapV5,515 given refSeqComposite,1542 transMapEnsemblV5,484 transMapEnsemblV5,657 transMapEstV5,453 transMapEstV5,626 transMapRefSeqV5,453 transMapRefSeqV5,626 transMapRnaV5,453 transMapRnaV5,626 transMapV5,559 transMapV5,732 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,357 transMapEstV5,326 transMapRefSeqV5,326 transMapRnaV5,326 transMapV5,432 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 gnomon refSeqComposite,375 go est,417 est,438 genscan,113 intronEst,498 intronEst,519 mrna,354 mrna,377 refSeqComposite,857 uniprot,1412 xenoRefGene,181 gold gold,91 gold,105 goldenpath uniprot,1907 gr refSeqComposite,1753 xenoRefGene,323 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainNetRn6,450 chainRn6,447 gold,130 netRn6,447 rmsk,211 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainNetRn6,643 chainRn6,640 netRn6,640 refSeqComposite,388 refSeqComposite,449 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 intronEst,90 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 refSeqComposite,1568 refSeqComposite,1578 refSeqComposite,1590 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,195 transMapEstV5,164 transMapRefSeqV5,164 transMapRnaV5,164 transMapV5,270 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainNetRn6,947 chainNetRn6,1104 chainRn6,944 chainRn6,1101 netRn6,944 netRn6,1101 harris chainNetRn6,1021 chainRn6,1018 netRn6,1018 hart refSeqComposite,1764 xenoRefGene,334 has est,117 intronEst,198 mrna,63 nestedRepeats,246 refSeqComposite,617 refSeqComposite,638 refSeqComposite,674 refSeqComposite,686 refSeqComposite,699 refSeqComposite,818 transMapV5,146 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,68 haussler augustusGene,292 chainNetRn6,982 chainNetRn6,1062 chainNetRn6,1106 chainRn6,979 chainRn6,1059 chainRn6,1103 netRn6,979 netRn6,1059 netRn6,1103 transMapEnsemblV5,763 transMapEnsemblV5,797 transMapEstV5,732 transMapEstV5,766 transMapRefSeqV5,732 transMapRefSeqV5,766 transMapRnaV5,732 transMapRnaV5,766 transMapV5,838 transMapV5,872 have chainNetRn6,579 chainRn6,576 intronEst,7 intronEst,89 nestedRepeats,88 netRn6,576 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 est,694 est,703 intronEst,775 intronEst,784 mrna,410 mrna,419 refSeqComposite,1259 refSeqComposite,1268 xenoRefGene,249 xenoRefGene,258 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refSeqComposite,125 helpful est,145 intronEst,226 mrna,91 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here refSeqComposite,994 refSeqComposite,1197 refSeqComposite,1469 refSeqComposite,1491 refSeqComposite,1685 rmsk,127 transMapEnsemblV5,137 transMapEnsemblV5,151 transMapEnsemblV5,644 transMapEstV5,106 transMapEstV5,120 transMapEstV5,613 transMapRefSeqV5,106 transMapRefSeqV5,120 transMapRefSeqV5,613 transMapRnaV5,106 transMapRnaV5,120 transMapRnaV5,613 transMapV5,212 transMapV5,226 transMapV5,719 uniprot,1795 hg.conf refSeqComposite,1640 hg19 refSeqComposite,574 uniprot,847 uniprot,860 hg38 refSeqComposite,518 refSeqComposite,576 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 refSeqComposite,1552 transMapEnsemblV5,663 transMapEstV5,632 transMapRefSeqV5,632 transMapRnaV5,632 transMapV5,738 uniprot,1814 uniprot,1906 uniprot,1916 hgmd refSeqComposite,550 hgvs refSeqComposite,903 refSeqComposite,916 refSeqComposite,955 refSeqComposite,984 refSeqComposite,1043 refSeqComposite,1070 refSeqComposite,1074 refSeqComposite,1094 hiatt refSeqComposite,1754 xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide refSeqComposite,175 uniprot,659 uniprot,667 xenoRefGene,192 hierarchy chainNetRn6,830 chainRn6,827 netRn6,827 high gc5BaseBw,29 transMapV5,119 higher chainNetRn6,862 chainRn6,859 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netRn6,859 rmsk,230 transMapV5,147 higher-level chainNetRn6,879 chainRn6,876 netRn6,876 higher-scoring chainNetRn6,823 chainNetRn6,842 chainRn6,820 chainRn6,839 netRn6,820 netRn6,839 highest est,696 intronEst,777 mrna,412 refSeqComposite,1261 uniprot,948 uniprot,1113 xenoRefGene,251 highest-scoring chainNetRn6,402 chainNetRn6,789 chainRn6,399 chainRn6,786 netRn6,399 netRn6,786 highlight est,336 gc5BaseBw,49 intronEst,417 mrna,282 highlighted est,306 est,324 intronEst,387 intronEst,405 mrna,252 mrna,270 uniprot,580 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainNetRn6,1058 chainRn6,1055 netRn6,1055 hiram gc5BaseBw,82 ucscToINSDC,51 ucscToRefSeq,45 his chainNetRn6,956 chainRn6,953 netRn6,953 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainNetRn6,935 chainRn6,932 netRn6,932 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainNetRn6,890 chainNetRn6,907 chainRn6,887 chainRn6,904 netRn6,887 netRn6,904 refSeqComposite,97 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,488 transMapEstV5,457 transMapRefSeqV5,457 transMapRnaV5,457 transMapV5,563 hox refSeqComposite,415 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 refSeqComposite,1551 rmsk,355 transMapEnsemblV5,662 transMapEstV5,631 transMapRefSeqV5,631 transMapRnaV5,631 transMapV5,737 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainNetRn6,1075 chainRn6,1072 genscan,217 nestedRepeats,404 netRn6,1072 refSeqComposite,246 refSeqComposite,298 refSeqComposite,561 refSeqComposite,572 refSeqComposite,1076 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,365 transMapEnsemblV5,474 transMapEnsemblV5,741 transMapEnsemblV5,809 transMapEstV5,334 transMapEstV5,443 transMapEstV5,710 transMapEstV5,778 transMapRefSeqV5,334 transMapRefSeqV5,443 transMapRefSeqV5,710 transMapRefSeqV5,778 transMapRnaV5,334 transMapRnaV5,443 transMapRnaV5,710 transMapRnaV5,778 transMapV5,105 transMapV5,134 transMapV5,440 transMapV5,549 transMapV5,816 transMapV5,884 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainNetRn6,1110 chainRn6,1107 netRn6,1107 hybridizes est,500 intronEst,581 i est,754 est,778 intronEst,838 intronEst,862 mrna,471 mrna,495 i.e intronEst,72 icon refSeqComposite,754 id nestedRepeats,10 nestedRepeats,106 refSeqComposite,1133 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainNetRn6,951 chainRn6,948 est,700 intronEst,781 netRn6,948 refSeqComposite,1265 transMapEnsemblV5,515 transMapEstV5,484 transMapRefSeqV5,484 transMapRnaV5,484 transMapV5,590 xenoRefGene,255 identifier refSeqComposite,785 refSeqComposite,804 transMapEnsemblV5,486 transMapEstV5,455 transMapRefSeqV5,455 transMapRnaV5,455 transMapV5,561 identifiers transMapEnsemblV5,387 transMapEnsemblV5,446 transMapEnsemblV5,464 transMapEstV5,356 transMapEstV5,415 transMapEstV5,433 transMapRefSeqV5,356 transMapRefSeqV5,415 transMapRefSeqV5,433 transMapRnaV5,356 transMapRnaV5,415 transMapRnaV5,433 transMapV5,462 transMapV5,521 transMapV5,539 ucscToRefSeq,19 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity est,698 est,706 est,718 intronEst,779 intronEst,787 intronEst,799 microsat,71 mrna,414 mrna,422 mrna,434 nestedRepeats,187 nestedRepeats,222 refSeqComposite,1263 refSeqComposite,1271 refSeqComposite,1283 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if est,279 est,291 est,307 est,343 est,360 gap,77 intronEst,360 intronEst,372 intronEst,388 intronEst,424 intronEst,441 mrna,225 mrna,237 mrna,253 mrna,289 mrna,306 nestedRepeats,137 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,205 ignored refSeqComposite,1456 uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,773 transMapEstV5,742 transMapRefSeqV5,742 transMapRnaV5,742 transMapV5,848 improved chainNetRn6,1024 chainRn6,1021 netRn6,1021 in augustusGene,101 chainNetRn6,35 chainNetRn6,100 chainNetRn6,121 chainNetRn6,153 chainNetRn6,160 chainNetRn6,175 chainNetRn6,194 chainNetRn6,197 chainNetRn6,237 chainNetRn6,258 chainNetRn6,305 chainNetRn6,339 chainNetRn6,369 chainNetRn6,381 chainNetRn6,390 chainNetRn6,408 chainNetRn6,413 chainNetRn6,422 chainNetRn6,434 chainNetRn6,448 chainNetRn6,490 chainNetRn6,507 chainNetRn6,538 chainNetRn6,556 chainNetRn6,570 chainNetRn6,606 chainNetRn6,703 chainNetRn6,791 chainNetRn6,832 chainNetRn6,840 chainNetRn6,856 chainNetRn6,889 chainNetRn6,901 chainNetRn6,1071 chainRn6,32 chainRn6,97 chainRn6,118 chainRn6,150 chainRn6,157 chainRn6,172 chainRn6,191 chainRn6,194 chainRn6,234 chainRn6,255 chainRn6,302 chainRn6,336 chainRn6,366 chainRn6,378 chainRn6,387 chainRn6,405 chainRn6,410 chainRn6,419 chainRn6,431 chainRn6,445 chainRn6,487 chainRn6,504 chainRn6,535 chainRn6,553 chainRn6,567 chainRn6,603 chainRn6,700 chainRn6,788 chainRn6,829 chainRn6,837 chainRn6,853 chainRn6,886 chainRn6,898 chainRn6,1068 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,276 est,398 est,531 est,579 est,689 gap,13 gap,26 gap,44 gap,74 gap,129 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,28 gold,67 gold,128 gold,139 gold,147 intronEst,25 intronEst,48 intronEst,86 intronEst,100 intronEst,144 intronEst,232 intronEst,253 intronEst,276 intronEst,286 intronEst,304 intronEst,357 intronEst,479 intronEst,612 intronEst,660 intronEst,770 intronEst,806 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,222 mrna,405 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netRn6,32 netRn6,97 netRn6,118 netRn6,150 netRn6,157 netRn6,172 netRn6,191 netRn6,194 netRn6,234 netRn6,255 netRn6,302 netRn6,336 netRn6,366 netRn6,378 netRn6,387 netRn6,405 netRn6,410 netRn6,419 netRn6,431 netRn6,445 netRn6,487 netRn6,504 netRn6,535 netRn6,553 netRn6,567 netRn6,603 netRn6,700 netRn6,788 netRn6,829 netRn6,837 netRn6,853 netRn6,886 netRn6,898 netRn6,1068 refSeqComposite,62 refSeqComposite,278 refSeqComposite,397 refSeqComposite,760 refSeqComposite,992 refSeqComposite,1039 refSeqComposite,1066 refSeqComposite,1143 refSeqComposite,1169 refSeqComposite,1184 refSeqComposite,1254 refSeqComposite,1301 refSeqComposite,1345 refSeqComposite,1360 refSeqComposite,1369 refSeqComposite,1379 refSeqComposite,1389 refSeqComposite,1448 refSeqComposite,1457 refSeqComposite,1472 refSeqComposite,1480 refSeqComposite,1540 refSeqComposite,1625 refSeqComposite,1662 refSeqComposite,1668 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,161 transMapEnsemblV5,338 transMapEnsemblV5,362 transMapEnsemblV5,370 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,495 transMapEnsemblV5,545 transMapEnsemblV5,587 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,130 transMapEstV5,307 transMapEstV5,331 transMapEstV5,339 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,464 transMapEstV5,514 transMapEstV5,556 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,130 transMapRefSeqV5,307 transMapRefSeqV5,331 transMapRefSeqV5,339 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,464 transMapRefSeqV5,514 transMapRefSeqV5,556 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,130 transMapRnaV5,307 transMapRnaV5,331 transMapRnaV5,339 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,464 transMapRnaV5,514 transMapRnaV5,556 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,77 transMapV5,236 transMapV5,413 transMapV5,437 transMapV5,445 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,570 transMapV5,620 transMapV5,662 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,244 include est,133 est,338 est,362 intronEst,214 intronEst,419 intronEst,443 mrna,79 mrna,284 mrna,308 refSeqComposite,188 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes refSeqComposite,217 refSeqComposite,263 refSeqComposite,347 refSeqComposite,652 rmsk,198 uniprot,1587 including est,7 intronEst,122 refSeqComposite,799 rmsk,188 uniprot,1700 inclusion refSeqComposite,396 inconsistency refSeqComposite,877 incorporate refSeqComposite,664 incorrect uniprot,1361 indels microsat,74 independently refSeqComposite,294 indexing refSeqComposite,1467 indicate chainNetRn6,144 chainNetRn6,252 chainRn6,141 chainRn6,249 est,71 mrna,52 nestedRepeats,153 netRn6,141 netRn6,249 indicates est,79 intronEst,150 intronEst,160 refSeqComposite,609 xenoRefGene,60 individual chainNetRn6,249 chainNetRn6,505 chainRn6,246 chainRn6,502 netRn6,246 netRn6,502 refSeqComposite,680 refSeqComposite,705 refSeqComposite,749 refSeqComposite,1495 transMapEnsemblV5,603 transMapEstV5,572 transMapRefSeqV5,572 transMapRnaV5,572 transMapV5,678 information augustusGene,36 chainNetRn6,468 chainNetRn6,481 chainNetRn6,487 chainNetRn6,857 chainRn6,465 chainRn6,478 chainRn6,484 chainRn6,854 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 est,78 est,413 est,437 gap,35 gc5BaseBw,55 genscan,51 genscan,126 gold,37 intronEst,159 intronEst,494 intronEst,518 microsat,97 mrna,350 mrna,376 nestedRepeats,53 nestedRepeats,301 netRn6,465 netRn6,478 netRn6,484 netRn6,854 refSeqComposite,131 refSeqComposite,669 refSeqComposite,853 refSeqComposite,1188 refSeqComposite,1384 refSeqComposite,1388 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,132 transMapEnsemblV5,149 transMapEnsemblV5,569 transMapEstV5,101 transMapEstV5,118 transMapEstV5,538 transMapRefSeqV5,101 transMapRefSeqV5,118 transMapRefSeqV5,538 transMapRnaV5,101 transMapRnaV5,118 transMapRnaV5,538 transMapV5,207 transMapV5,224 transMapV5,644 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,177 initial refSeqComposite,683 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainNetRn6,581 chainNetRn6,913 chainRn6,578 chainRn6,910 netRn6,578 netRn6,910 insertion chainNetRn6,159 chainRn6,156 est,442 intronEst,523 mrna,381 netRn6,156 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 refSeqComposite,949 inside uniprot,560 inspection uniprot,1653 instead refSeqComposite,786 xenoRefGene,120 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 transMapEnsemblV5,634 transMapEstV5,603 transMapRefSeqV5,603 transMapRnaV5,603 transMapV5,709 uniprot,1785 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 refSeqComposite,1317 transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 refSeqComposite,1308 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international est,739 intronEst,823 mrna,456 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainNetRn6,612 chainNetRn6,624 chainNetRn6,641 chainNetRn6,816 chainRn6,609 chainRn6,621 chainRn6,638 chainRn6,813 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 est,255 est,460 est,467 est,612 intronEst,336 intronEst,541 intronEst,548 intronEst,693 mrna,201 netRn6,609 netRn6,621 netRn6,638 netRn6,813 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 est,662 intronEst,71 intronEst,743 introns chainNetRn6,60 chainRn6,57 est,679 genscan,45 intronEst,760 netRn6,57 refSeqComposite,940 refSeqComposite,1031 inv chainNetRn6,543 chainRn6,540 netRn6,540 inversions chainNetRn6,117 chainNetRn6,182 chainRn6,114 chainRn6,179 netRn6,114 netRn6,179 inverted chainNetRn6,875 chainRn6,872 netRn6,872 invisible refSeqComposite,1038 refSeqComposite,1065 involve chainNetRn6,172 chainRn6,169 netRn6,169 is chainNetRn6,288 chainNetRn6,308 chainNetRn6,488 chainRn6,285 chainRn6,305 chainRn6,485 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 est,295 est,311 est,347 est,364 est,453 est,465 est,474 est,494 est,623 est,667 gap,47 gap,92 gap,99 gap,107 gc5BaseBw,32 gold,46 gold,120 gold,126 intronEst,104 intronEst,376 intronEst,392 intronEst,428 intronEst,445 intronEst,534 intronEst,546 intronEst,555 intronEst,575 intronEst,704 intronEst,748 microsat,88 mrna,241 mrna,257 mrna,293 mrna,310 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netRn6,285 netRn6,305 netRn6,485 refSeqComposite,147 refSeqComposite,243 refSeqComposite,317 refSeqComposite,537 refSeqComposite,567 refSeqComposite,578 refSeqComposite,714 refSeqComposite,1059 refSeqComposite,1202 refSeqComposite,1217 refSeqComposite,1434 refSeqComposite,1440 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,277 transMapEnsemblV5,421 transMapEnsemblV5,425 transMapEnsemblV5,437 transMapEnsemblV5,483 transMapEstV5,246 transMapEstV5,390 transMapEstV5,394 transMapEstV5,406 transMapEstV5,452 transMapRefSeqV5,246 transMapRefSeqV5,390 transMapRefSeqV5,394 transMapRefSeqV5,406 transMapRefSeqV5,452 transMapRnaV5,246 transMapRnaV5,390 transMapRnaV5,394 transMapRnaV5,406 transMapRnaV5,452 transMapV5,352 transMapV5,496 transMapV5,500 transMapV5,512 transMapV5,558 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,454 intronEst,535 issue est,769 est,795 intronEst,853 intronEst,879 mrna,486 mrna,512 refSeqComposite,1786 refSeqComposite,1820 uniprot,2004 xenoRefGene,356 xenoRefGene,390 it chainNetRn6,95 chainNetRn6,287 chainNetRn6,542 chainNetRn6,554 chainRn6,92 chainRn6,284 chainRn6,539 chainRn6,551 est,93 est,107 est,516 gap,98 genscan,143 intronEst,174 intronEst,188 intronEst,597 netRn6,92 netRn6,284 netRn6,539 netRn6,551 refSeqComposite,577 refSeqComposite,1304 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refSeqComposite,717 xenoRefGene,77 items chainNetRn6,506 chainRn6,503 est,65 est,138 est,148 est,342 intronEst,219 intronEst,229 intronEst,423 mrna,46 mrna,84 mrna,94 mrna,288 nestedRepeats,171 nestedRepeats,180 netRn6,503 refSeqComposite,767 refSeqComposite,966 refSeqComposite,1667 xenoRefGene,104 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 est,758 est,782 genscan,220 intronEst,842 intronEst,866 mrna,475 mrna,499 nestedRepeats,341 refSeqComposite,1765 rmsk,364 transMapEnsemblV5,788 transMapEstV5,757 transMapRefSeqV5,757 transMapRnaV5,757 transMapV5,863 xenoRefGene,335 jan chainNetRn6,1117 chainRn6,1114 ensGene,199 est,766 est,791 intronEst,850 intronEst,875 microsat,129 mrna,483 mrna,508 netRn6,1114 refSeqComposite,1783 refSeqComposite,1816 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,353 xenoRefGene,386 jim chainNetRn6,973 chainNetRn6,1000 chainNetRn6,1018 chainRn6,970 chainRn6,997 chainRn6,1015 netRn6,970 netRn6,997 netRn6,1015 joined chainNetRn6,129 chainRn6,126 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netRn6,126 journal nestedRepeats,349 rmsk,372 json refSeqComposite,1361 refSeqComposite,1365 jul chainNetRn6,5 chainNetRn6,70 chainNetRn6,311 chainNetRn6Viewchain,3 chainNetRn6Viewnet,3 chainRn6,4 chainRn6,67 chainRn6,308 cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 netRn6,4 netRn6,67 netRn6,308 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 k augustusGene,268 est,752 intronEst,836 mrna,469 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi est,753 est,777 intronEst,837 intronEst,861 mrna,470 mrna,494 kasif genscan,193 kd refSeqComposite,1751 refSeqComposite,1793 xenoRefGene,321 xenoRefGene,363 kd-tree chainNetRn6,647 chainRn6,644 netRn6,644 kd-trees chainNetRn6,665 chainRn6,662 netRn6,662 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainNetRn6,974 chainNetRn6,1001 chainNetRn6,1019 chainNetRn6,1054 chainNetRn6,1096 chainRn6,971 chainRn6,998 chainRn6,1016 chainRn6,1051 chainRn6,1093 est,801 intronEst,885 mrna,518 netRn6,971 netRn6,998 netRn6,1016 netRn6,1051 netRn6,1093 refSeqComposite,1732 xenoRefGene,303 kept est,724 mrna,440 refSeqComposite,1289 xenoRefGene,279 km refSeqComposite,1769 xenoRefGene,339 known chainNetRn6,924 chainRn6,921 gold,122 netRn6,921 refSeqComposite,505 xenoRefGene,15 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 lab augustusGene,252 label genscan,98 refSeqComposite,764 refSeqComposite,776 refSeqComposite,812 xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled nestedRepeats,132 refSeqComposite,769 uniprot,457 xenoRefGene,106 labeling est,387 intronEst,468 labels nestedRepeats,161 refSeqComposite,718 refSeqComposite,798 xenoRefGene,78 landrum refSeqComposite,1766 xenoRefGene,336 langton transMapEnsemblV5,721 transMapEstV5,690 transMapRefSeqV5,690 transMapRnaV5,690 transMapV5,796 largely chainNetRn6,148 chainRn6,145 netRn6,145 larger intronEst,152 largest chainNetRn6,401 chainRn6,398 netRn6,398 lastz chainNetRn6,599 chainNetRn6,773 chainNetRn6,922 chainRn6,596 chainRn6,770 chainRn6,919 netRn6,596 netRn6,770 netRn6,919 transMapV5,46 lau transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 lavtoaxt chainNetRn6,617 chainRn6,614 netRn6,614 least est,715 intronEst,68 intronEst,83 intronEst,796 microsat,29 microsat,78 mrna,431 refSeqComposite,1280 xenoRefGene,270 lee uniprot,1955 left refSeqComposite,972 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 est,38 est,663 genscan,39 intronEst,49 intronEst,87 intronEst,744 less refSeqComposite,1244 transMapEnsemblV5,375 transMapEstV5,344 transMapRefSeqV5,344 transMapRnaV5,344 transMapV5,450 uniprot,680 xenoRefGene,234 level chainNetRn6,396 chainNetRn6,430 chainNetRn6,435 chainNetRn6,442 chainNetRn6,500 chainNetRn6,527 chainNetRn6,540 chainNetRn6,572 chainRn6,393 chainRn6,427 chainRn6,432 chainRn6,439 chainRn6,497 chainRn6,524 chainRn6,537 chainRn6,569 est,707 intronEst,97 intronEst,788 mrna,423 netRn6,393 netRn6,427 netRn6,432 netRn6,439 netRn6,497 netRn6,524 netRn6,537 netRn6,569 refSeqComposite,611 refSeqComposite,631 refSeqComposite,1272 rmsk,205 xenoRefGene,62 xenoRefGene,262 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries est,560 intronEst,641 nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refSeqComposite,620 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 lighter rmsk,237 like chainNetRn6,51 chainNetRn6,59 chainRn6,48 chainRn6,56 ensGene,148 netRn6,48 netRn6,56 refSeqComposite,83 refSeqComposite,1615 uniprot,1541 likely augustusGene,111 microsat,17 refSeqComposite,948 transMapV5,94 line chainNetRn6,478 chainRn6,475 gap,106 gold,125 nestedRepeats,151 netRn6,475 refSeqComposite,1003 refSeqComposite,1014 refSeqComposite,1614 rmsk,165 uniprot,1872 uniprot,1876 line-up chainNetRn6,545 chainRn6,542 netRn6,542 line-ups chainNetRn6,530 chainRn6,527 netRn6,527 lineage transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 lineage-specific chainNetRn6,948 chainRn6,945 netRn6,945 linear chainNetRn6,707 chainRn6,704 netRn6,704 lineargap chainNetRn6,713 chainRn6,710 netRn6,710 lines chainNetRn6,136 chainNetRn6,143 chainNetRn6,166 chainNetRn6,458 chainRn6,133 chainRn6,140 chainRn6,163 chainRn6,455 nestedRepeats,131 netRn6,133 netRn6,140 netRn6,163 netRn6,455 refSeqComposite,998 link gc5BaseBw,63 uniprot,491 uniprot,1675 linked refSeqComposite,1532 refSeqComposite,1647 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman est,755 est,779 intronEst,839 intronEst,863 mrna,472 mrna,496 lipoification uniprot,577 list est,212 intronEst,293 mrna,158 refSeqComposite,763 refSeqComposite,1691 uniprot,979 uniprot,1165 uniprot,1831 listed ensGene,49 literature refSeqComposite,283 refSeqComposite,659 uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainNetRn6,116 chainNetRn6,188 chainRn6,113 chainRn6,185 ensGene,73 nestedRepeats,98 netRn6,113 netRn6,185 refSeqComposite,1337 located simpleRepeat,21 location chainNetRn6,257 chainRn6,254 netRn6,254 transMapEnsemblV5,404 transMapEnsemblV5,414 transMapEnsemblV5,481 transMapEstV5,373 transMapEstV5,383 transMapEstV5,450 transMapRefSeqV5,373 transMapRefSeqV5,383 transMapRefSeqV5,450 transMapRnaV5,373 transMapRnaV5,383 transMapRnaV5,450 transMapV5,479 transMapV5,489 transMapV5,556 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 uniprot,451 logic est,290 intronEst,371 mrna,236 long est,678 intronEst,759 refSeqComposite,1027 rmsk,161 rmsk,166 long-established transMapEnsemblV5,805 transMapEstV5,774 transMapRefSeqV5,774 transMapRnaV5,774 transMapV5,880 longer chainNetRn6,87 chainRn6,84 netRn6,84 longest chainNetRn6,523 chainRn6,520 netRn6,520 look chainNetRn6,50 chainRn6,47 netRn6,47 loose chainNetRn6,714 chainRn6,711 netRn6,711 losses transMapEnsemblV5,803 transMapEstV5,772 transMapRefSeqV5,772 transMapRnaV5,772 transMapV5,878 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 lower chainNetRn6,499 chainRn6,496 netRn6,496 lower-level chainNetRn6,864 chainNetRn6,870 chainRn6,861 chainRn6,867 netRn6,861 netRn6,867 ls-snp uniprot,1536 lt refSeqComposite,944 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 est,750 intronEst,834 mrna,467 transMapEnsemblV5,717 transMapEnsemblV5,724 transMapEnsemblV5,758 transMapEnsemblV5,760 transMapEnsemblV5,792 transMapEstV5,686 transMapEstV5,693 transMapEstV5,727 transMapEstV5,729 transMapEstV5,761 transMapRefSeqV5,686 transMapRefSeqV5,693 transMapRefSeqV5,727 transMapRefSeqV5,729 transMapRefSeqV5,761 transMapRnaV5,686 transMapRnaV5,693 transMapRnaV5,727 transMapRnaV5,729 transMapRnaV5,761 transMapV5,792 transMapV5,799 transMapV5,833 transMapV5,835 transMapV5,867 made rmsk,110 transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 uniprot,931 uniprot,938 maglott refSeqComposite,1796 xenoRefGene,366 mailing refSeqComposite,1690 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make est,449 est,515 gold,76 intronEst,530 intronEst,596 refSeqComposite,116 refSeqComposite,1099 rmsk,123 transMapEnsemblV5,430 transMapEstV5,399 transMapRefSeqV5,399 transMapRnaV5,399 transMapV5,505 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refSeqComposite,1776 rmsk,391 rmsk,405 xenoRefGene,346 manner refSeqComposite,1627 uniprot,1469 manual refSeqComposite,258 uniprot,1652 manually refSeqComposite,250 refSeqComposite,421 many chainNetRn6,409 chainRn6,406 est,147 intronEst,112 intronEst,228 mrna,93 netRn6,406 uniprot,932 uniprot,1124 map chainNetRn6,337 chainRn6,334 netRn6,334 transMapEnsemblV5,294 transMapEstV5,263 transMapRefSeqV5,263 transMapRnaV5,263 transMapV5,369 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 refSeqComposite,1108 transMapEnsemblV5,381 transMapEnsemblV5,413 transMapEnsemblV5,471 transMapEnsemblV5,769 transMapEstV5,350 transMapEstV5,382 transMapEstV5,440 transMapEstV5,738 transMapRefSeqV5,350 transMapRefSeqV5,382 transMapRefSeqV5,440 transMapRefSeqV5,738 transMapRnaV5,350 transMapRnaV5,382 transMapRnaV5,440 transMapRnaV5,738 transMapV5,131 transMapV5,456 transMapV5,488 transMapV5,546 transMapV5,844 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 refSeqComposite,320 transMapEnsemblV5,267 transMapEnsemblV5,287 transMapEnsemblV5,300 transMapEstV5,236 transMapEstV5,256 transMapEstV5,269 transMapRefSeqV5,236 transMapRefSeqV5,256 transMapRefSeqV5,269 transMapRnaV5,236 transMapRnaV5,256 transMapRnaV5,269 transMapV5,342 transMapV5,362 transMapV5,375 ucscToINSDC,10 ucscToRefSeq,5 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,503 transMapEstV5,5 transMapEstV5,472 transMapRefSeqV5,6 transMapRefSeqV5,472 transMapRnaV5,6 transMapRnaV5,472 transMapV5,578 uniprot,1362 maps transMapEnsemblV5,477 transMapEnsemblV5,490 transMapEstV5,446 transMapEstV5,459 transMapRefSeqV5,446 transMapRefSeqV5,459 transMapRnaV5,446 transMapRnaV5,459 transMapV5,72 transMapV5,552 transMapV5,565 mar augustusGene,309 transMapEnsemblV5,780 transMapEstV5,749 transMapRefSeqV5,749 transMapRnaV5,749 transMapV5,855 mario augustusGene,102 augustusGene,283 mark est,536 intronEst,617 transMapEnsemblV5,682 transMapEstV5,651 transMapRefSeqV5,651 transMapRnaV5,651 transMapV5,757 uniprot,1539 uniprot,1956 marked refSeqComposite,525 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainNetRn6,262 chainNetRn6,524 chainNetRn6,562 chainRn6,259 chainRn6,521 chainRn6,559 est,84 est,300 est,315 est,356 est,374 intronEst,165 intronEst,381 intronEst,396 intronEst,437 intronEst,455 mrna,246 mrna,261 mrna,302 mrna,320 netRn6,259 netRn6,521 netRn6,559 refSeqComposite,912 refSeqComposite,926 uniprot,1305 uniprot,1341 matches est,72 mrna,53 matching chainNetRn6,265 chainRn6,262 est,90 intronEst,171 netRn6,262 uniprot,1068 uniprot,1075 matrix chainNetRn6,677 chainNetRn6,709 chainRn6,674 chainRn6,706 netRn6,674 netRn6,706 mature est,506 intronEst,587 unipChain,3 uniprot,251 uniprot,292 maximally chainNetRn6,669 chainRn6,666 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netRn6,666 maximilian uniprot,1944 maximum est,661 intronEst,742 maxtracks augustusGene,139 may chainNetRn6,179 chainNetRn6,438 chainRn6,176 chainRn6,435 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 est,143 est,262 est,272 est,380 est,431 est,511 est,513 est,525 est,527 est,547 est,672 gc5BaseBw,40 intronEst,224 intronEst,343 intronEst,353 intronEst,461 intronEst,512 intronEst,592 intronEst,594 intronEst,606 intronEst,608 intronEst,628 intronEst,753 mrna,89 mrna,208 mrna,218 mrna,326 mrna,370 nestedRepeats,268 nestedRepeats,290 netRn6,176 netRn6,435 refSeqComposite,60 refSeqComposite,663 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEstV5,77 transMapEstV5,112 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRnaV5,77 transMapRnaV5,112 transMapV5,183 transMapV5,218 uniprot,2046 mcgarvey refSeqComposite,1768 xenoRefGene,338 md5 uniprot,1601 mdash est,485 est,489 intronEst,566 intronEst,570 mediating uniprot,314 medium refSeqComposite,622 xenoRefGene,73 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refSeqComposite,850 xenoRefGene,174 method ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 chainNetRn6,574 chainNetRn6,777 chainRn6,571 chainRn6,774 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 est,447 genscan,130 genscan,197 intronEst,528 microsat,45 mrna,386 nestedRepeats,244 netRn6,571 netRn6,774 refSeqComposite,91 refSeqComposite,1140 refSeqComposite,1222 rmsk,286 simpleRepeat,55 transMapEnsemblV5,152 transMapEstV5,121 transMapRefSeqV5,121 transMapRnaV5,121 transMapV5,227 uniprot,777 windowmaskerSdust,46 xenoRefGene,217 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,681 intronEst,189 intronEst,762 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainNetRn6,942 chainNetRn6,979 chainNetRn6,1040 chainNetRn6,1060 chainNetRn6,1108 chainRn6,939 chainRn6,976 chainRn6,1037 chainRn6,1057 chainRn6,1105 netRn6,939 netRn6,976 netRn6,1037 netRn6,1057 netRn6,1105 minexonintronprob augustusGene,135 minimum chainNetRn6,690 chainRn6,687 netRn6,687 minmeanexonintronprob augustusGene,137 minmei chainNetRn6,934 chainRn6,931 netRn6,931 mismatch refSeqComposite,896 rmsk,218 mismatching refSeqComposite,900 misplacements uniprot,853 mitochondrion refSeqComposite,241 mj refSeqComposite,1767 xenoRefGene,337 mk_counts windowmaskerSdust,59 mode chainNetRn6,393 chainRn6,390 est,63 est,128 gold,69 intronEst,147 intronEst,209 mrna,44 mrna,74 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netRn6,390 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainNetRn6,247 chainRn6,244 netRn6,244 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 months uniprot,1573 more augustusGene,35 chainNetRn6,168 chainNetRn6,229 chainRn6,165 chainRn6,226 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 est,68 est,175 est,282 est,412 est,436 genscan,50 genscan,125 genscan,163 intronEst,256 intronEst,363 intronEst,493 intronEst,517 microsat,96 mrna,49 mrna,121 mrna,228 mrna,349 mrna,375 nestedRepeats,211 nestedRepeats,300 netRn6,165 netRn6,226 refSeqComposite,94 refSeqComposite,130 refSeqComposite,852 refSeqComposite,1383 refSeqComposite,1463 rmsk,323 simpleRepeat,57 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,224 transMapEnsemblV5,269 transMapEnsemblV5,291 transMapEnsemblV5,568 transMapEstV5,100 transMapEstV5,117 transMapEstV5,193 transMapEstV5,238 transMapEstV5,260 transMapEstV5,537 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,193 transMapRefSeqV5,238 transMapRefSeqV5,260 transMapRefSeqV5,537 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,193 transMapRnaV5,238 transMapRnaV5,260 transMapRnaV5,537 transMapV5,63 transMapV5,107 transMapV5,164 transMapV5,206 transMapV5,223 transMapV5,299 transMapV5,344 transMapV5,366 transMapV5,643 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,176 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,484 intronEst,565 nestedRepeats,249 refSeqComposite,580 refSeqComposite,947 transMapV5,93 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainNetRn6,1073 chainRn6,1070 netRn6,1070 transMapEnsemblV5,44 transMapEnsemblV5,367 transMapEstV5,336 transMapRefSeqV5,336 transMapRnaV5,336 transMapV5,442 uniprot,521 uniprot,535 mrna est,9 est,507 est,523 est,606 intronEst,10 intronEst,588 intronEst,604 intronEst,687 mrna,9 mrna,14 mrna,129 mrna,403 mrna,443 mrna,450 transMapEnsemblV5,458 transMapEstV5,427 transMapRefSeqV5,427 transMapRnaV5,18 transMapRnaV5,427 transMapV5,100 transMapV5,533 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,244 mrna,259 mrna,300 mrna,318 mrna,343 mrna,390 transMapEnsemblV5,173 transMapEstV5,142 transMapRefSeqV5,142 transMapRnaV5,142 transMapV5,111 transMapV5,248 much chainNetRn6,891 chainNetRn6,908 chainRn6,888 chainRn6,905 nestedRepeats,210 netRn6,888 netRn6,905 mujica uniprot,1967 multiple chainNetRn6,200 chainRn6,197 est,260 est,690 intronEst,341 intronEst,771 mrna,206 mrna,406 netRn6,197 refSeqComposite,1255 refSeqComposite,1302 transMapEnsemblV5,501 transMapEstV5,470 transMapRefSeqV5,470 transMapRnaV5,470 transMapV5,576 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,245 must intronEst,63 intronEst,80 refSeqComposite,303 refSeqComposite,1636 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainNetRn6,189 chainRn6,186 netRn6,186 refSeqComposite,563 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 refSeqComposite,1328 refSeqComposite,1631 refSeqComposite,1645 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 refSeqComposite,918 refSeqComposite,959 refSeqComposite,986 refSeqComposite,1045 refSeqComposite,1072 refSeqComposite,1087 name chainNetRn6,375 chainRn6,372 est,201 intronEst,282 mrna,147 nestedRepeats,136 netRn6,372 refSeqComposite,759 refSeqComposite,772 refSeqComposite,782 refSeqComposite,790 refSeqComposite,802 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 names chainNetRn6,251 chainRn6,248 netRn6,248 refSeqComposite,807 ucscToINSDC,21 ucscToINSDC,24 ucscToRefSeq,16 xenoRefGene,131 native augustusGene,295 transMapEnsemblV5,766 transMapEstV5,735 transMapRefSeqV5,735 transMapRnaV5,735 transMapV5,123 transMapV5,841 natl chainNetRn6,1078 chainRn6,1075 netRn6,1075 natural chainNetRn6,829 chainRn6,826 netRn6,826 nbci uniprot,822 nbsp chainNetRn6,680 chainRn6,677 netRn6,677 nc_014285.1 gold,160 ncbi gap,28 gap,31 gap,57 gold,30 gold,33 gold,56 ncbiRefSeq,3 ncbiRefSeqCurated,3 ncbiRefSeqGenomicDiff,5 ncbiRefSeqOther,3 ncbiRefSeqPredicted,3 refSeqComposite,1 refSeqComposite,6 refSeqComposite,13 refSeqComposite,28 refSeqComposite,73 refSeqComposite,80 refSeqComposite,105 refSeqComposite,318 refSeqComposite,374 refSeqComposite,546 refSeqComposite,642 refSeqComposite,649 refSeqComposite,693 refSeqComposite,1160 refSeqComposite,1191 refSeqComposite,1207 refSeqComposite,1728 refSeqComposite,1798 ucscToINSDC,39 ucscToRefSeq,22 ucscToRefSeq,33 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 ncbirefseq refSeqComposite,1411 refSeqComposite,1555 refSeqComposite,1699 ncbirefseqcurated refSeqComposite,1414 ncbirefseqdiffs.bb refSeqComposite,1494 ncbirefseqother.bb refSeqComposite,1492 refSeqComposite,1556 ncbirefseqpredicted refSeqComposite,1417 refSeqComposite,1619 ncbirefseqpredicted.gtf refSeqComposite,1620 ncbirefseqpsl refSeqComposite,1425 ndash refSeqComposite,200 refSeqComposite,211 refSeqComposite,341 refSeqComposite,380 refSeqComposite,435 refSeqComposite,459 refSeqComposite,482 refSeqComposite,519 refSeqComposite,552 refSeqComposite,897 refSeqComposite,931 refSeqComposite,964 refSeqComposite,1022 refSeqComposite,1048 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 refSeqComposite,1648 near-best transMapEnsemblV5,358 transMapEstV5,327 transMapRefSeqV5,327 transMapRnaV5,327 transMapV5,433 necessary chainNetRn6,813 chainRn6,810 netRn6,810 nematodes augustusGene,211 net chainNetRn6,3 chainNetRn6,12 chainNetRn6,38 chainNetRn6,267 chainNetRn6,270 chainNetRn6,388 chainNetRn6,767 chainNetRn6Viewchain,10 chainNetRn6Viewnet,1 chainNetRn6Viewnet,10 chainRn6,35 chainRn6,264 chainRn6,267 chainRn6,385 chainRn6,764 netRn6,2 netRn6,10 netRn6,35 netRn6,264 netRn6,267 netRn6,385 netRn6,764 transMapV5,140 netclass chainNetRn6,883 chainNetRn6,1006 chainRn6,880 chainRn6,1003 netRn6,880 netRn6,1003 netfilter transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 nets chainNetRn6,993 chainRn6,990 netRn6,990 transMapEnsemblV5,200 transMapEnsemblV5,243 transMapEnsemblV5,249 transMapEnsemblV5,263 transMapEstV5,169 transMapEstV5,212 transMapEstV5,218 transMapEstV5,232 transMapRefSeqV5,169 transMapRefSeqV5,212 transMapRefSeqV5,218 transMapRefSeqV5,232 transMapRnaV5,169 transMapRnaV5,212 transMapRnaV5,218 transMapRnaV5,232 transMapV5,89 transMapV5,275 transMapV5,318 transMapV5,324 transMapV5,338 netsyntenic chainNetRn6,851 chainNetRn6,1004 chainRn6,848 chainRn6,1001 netRn6,848 netRn6,1001 new augustusGene,329 newer est,558 intronEst,639 nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainNetRn6,354 chainNetRn6,383 chainRn6,351 chainRn6,380 netRn6,351 netRn6,380 refSeqComposite,167 refSeqComposite,755 nig augustusGene,270 nm refSeqComposite,225 refSeqComposite,492 nm_ ncbiRefSeq,9 ncbiRefSeqCurated,8 ncbiRefSeqOther,8 nm_012309 refSeqComposite,1139 nm_012309.4 refSeqComposite,1137 no est,95 intronEst,176 microsat,73 transMapEnsemblV5,223 transMapEstV5,192 transMapRefSeqV5,192 transMapRnaV5,192 transMapV5,298 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainNetRn6,53 chainRn6,50 netRn6,50 non-coding augustusGene,75 refSeqComposite,1088 xenoRefGene,193 non-elephant xenoRefGene,3 non-mrna est,627 intronEst,708 non-protein-coding refSeqComposite,23 xenoRefGene,18 xenoRefGene,201 non-redundant refSeqComposite,1804 xenoRefGene,374 nonsyn chainNetRn6,560 chainRn6,557 netRn6,557 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainNetRn6,818 chainRn6,815 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 est,352 est,487 est,514 est,528 intronEst,433 intronEst,568 intronEst,595 intronEst,609 mrna,298 ncbiRefSeqOther,7 netRn6,815 refSeqComposite,177 refSeqComposite,391 refSeqComposite,429 refSeqComposite,474 refSeqComposite,675 refSeqComposite,700 refSeqComposite,1060 refSeqComposite,1138 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note est,658 intronEst,739 nestedRepeats,264 refSeqComposite,176 refSeqComposite,1621 transMapEnsemblV5,499 transMapEstV5,468 transMapRefSeqV5,468 transMapRnaV5,468 transMapV5,574 uniprot,695 novel transMapEnsemblV5,740 transMapEstV5,709 transMapRefSeqV5,709 transMapRnaV5,709 transMapV5,815 novo augustusGene,304 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 now uniprot,1680 np refSeqComposite,227 refSeqComposite,230 np_ ncbiRefSeq,13 ncbiRefSeqCurated,10 ncbiRefSeqOther,12 nr refSeqComposite,226 refSeqComposite,494 nr_ ncbiRefSeq,11 ncbiRefSeqCurated,9 ncbiRefSeqOther,9 ns chainNetRn6,898 chainRn6,895 netRn6,895 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 est,762 est,787 intronEst,846 intronEst,871 microsat,125 mrna,479 mrna,504 refSeqComposite,1779 refSeqComposite,1812 simpleRepeat,85 uniprot,1997 xenoRefGene,349 xenoRefGene,382 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 intronEst,153 rmsk,233 transMapEnsemblV5,427 transMapEnsemblV5,550 transMapEstV5,396 transMapEstV5,519 transMapRefSeqV5,396 transMapRefSeqV5,519 transMapRnaV5,396 transMapRnaV5,519 transMapV5,502 transMapV5,625 o refSeqComposite,1761 xenoRefGene,331 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 refSeqComposite,1486 refSeqComposite,1506 transMapEnsemblV5,157 transMapEnsemblV5,612 transMapEstV5,126 transMapEstV5,581 transMapRefSeqV5,126 transMapRefSeqV5,581 transMapRnaV5,126 transMapRnaV5,581 transMapV5,232 transMapV5,687 uniprot,1506 uniprot,1695 occasional refSeqComposite,63 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainNetRn6,21 chainNetRn6,68 chainNetRn6,187 chainNetRn6,207 chainNetRn6,260 chainNetRn6,282 chainNetRn6,366 chainNetRn6,376 chainNetRn6,494 chainNetRn6,514 chainNetRn6,649 chainNetRn6,654 chainNetRn6,672 chainNetRn6,692 chainNetRn6,892 chainNetRn6,967 chainNetRn6,989 chainNetRn6,1013 chainNetRn6,1027 chainRn6,18 chainRn6,65 chainRn6,184 chainRn6,204 chainRn6,257 chainRn6,279 chainRn6,363 chainRn6,373 chainRn6,491 chainRn6,511 chainRn6,646 chainRn6,651 chainRn6,669 chainRn6,689 chainRn6,889 chainRn6,964 chainRn6,986 chainRn6,1010 chainRn6,1024 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,318 est,428 est,505 est,521 est,539 est,556 est,618 est,626 est,630 est,710 gap,41 gap,64 gap,83 gap,89 gap,123 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,43 gold,63 gold,89 gold,114 gold,144 intronEst,33 intronEst,54 intronEst,66 intronEst,98 intronEst,110 intronEst,119 intronEst,154 intronEst,163 intronEst,181 intronEst,183 intronEst,218 intronEst,257 intronEst,283 intronEst,294 intronEst,330 intronEst,399 intronEst,509 intronEst,586 intronEst,602 intronEst,620 intronEst,637 intronEst,699 intronEst,707 intronEst,711 intronEst,791 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,264 mrna,367 mrna,426 ncbiRefSeqPsl,5 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netRn6,18 netRn6,65 netRn6,184 netRn6,204 netRn6,257 netRn6,279 netRn6,363 netRn6,373 netRn6,491 netRn6,511 netRn6,646 netRn6,651 netRn6,669 netRn6,689 netRn6,889 netRn6,964 netRn6,986 netRn6,1010 netRn6,1024 refSeqComposite,162 refSeqComposite,195 refSeqComposite,213 refSeqComposite,260 refSeqComposite,321 refSeqComposite,343 refSeqComposite,437 refSeqComposite,489 refSeqComposite,521 refSeqComposite,528 refSeqComposite,554 refSeqComposite,612 refSeqComposite,632 refSeqComposite,710 refSeqComposite,738 refSeqComposite,787 refSeqComposite,796 refSeqComposite,876 refSeqComposite,891 refSeqComposite,943 refSeqComposite,989 refSeqComposite,1007 refSeqComposite,1055 refSeqComposite,1243 refSeqComposite,1275 refSeqComposite,1348 refSeqComposite,1429 refSeqComposite,1431 refSeqComposite,1501 refSeqComposite,1571 refSeqComposite,1651 refSeqComposite,1697 refSeqComposite,1701 refSeqComposite,1807 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,140 transMapEnsemblV5,169 transMapEnsemblV5,209 transMapEnsemblV5,275 transMapEnsemblV5,282 transMapEnsemblV5,298 transMapEnsemblV5,310 transMapEnsemblV5,323 transMapEnsemblV5,341 transMapEnsemblV5,360 transMapEnsemblV5,378 transMapEnsemblV5,457 transMapEnsemblV5,508 transMapEnsemblV5,551 transMapEnsemblV5,739 transMapEnsemblV5,804 transMapEstV5,54 transMapEstV5,109 transMapEstV5,138 transMapEstV5,178 transMapEstV5,244 transMapEstV5,251 transMapEstV5,267 transMapEstV5,279 transMapEstV5,292 transMapEstV5,310 transMapEstV5,329 transMapEstV5,347 transMapEstV5,426 transMapEstV5,477 transMapEstV5,520 transMapEstV5,708 transMapEstV5,773 transMapRefSeqV5,54 transMapRefSeqV5,109 transMapRefSeqV5,138 transMapRefSeqV5,178 transMapRefSeqV5,244 transMapRefSeqV5,251 transMapRefSeqV5,267 transMapRefSeqV5,279 transMapRefSeqV5,292 transMapRefSeqV5,310 transMapRefSeqV5,329 transMapRefSeqV5,347 transMapRefSeqV5,426 transMapRefSeqV5,477 transMapRefSeqV5,520 transMapRefSeqV5,708 transMapRefSeqV5,773 transMapRnaV5,54 transMapRnaV5,109 transMapRnaV5,138 transMapRnaV5,178 transMapRnaV5,244 transMapRnaV5,251 transMapRnaV5,267 transMapRnaV5,279 transMapRnaV5,292 transMapRnaV5,310 transMapRnaV5,329 transMapRnaV5,347 transMapRnaV5,426 transMapRnaV5,477 transMapRnaV5,520 transMapRnaV5,708 transMapRnaV5,773 transMapV5,55 transMapV5,215 transMapV5,244 transMapV5,284 transMapV5,350 transMapV5,357 transMapV5,373 transMapV5,385 transMapV5,398 transMapV5,416 transMapV5,435 transMapV5,453 transMapV5,532 transMapV5,583 transMapV5,626 transMapV5,814 transMapV5,879 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainNetRn6,345 chainNetRn6,351 chainRn6,342 chainRn6,348 netRn6,342 netRn6,348 refSeqComposite,810 xenoRefGene,134 offers genscan,79 often chainNetRn6,218 chainNetRn6,230 chainRn6,215 chainRn6,227 netRn6,215 netRn6,227 older uniprot,1560 uniprot,1647 oligo-dt est,498 intronEst,579 omim refSeqComposite,784 refSeqComposite,803 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainNetRn6,333 chainNetRn6,359 chainNetRn6,462 chainNetRn6,476 chainNetRn6,526 chainNetRn6,531 chainNetRn6,546 chainNetRn6,779 chainRn6,330 chainRn6,356 chainRn6,459 chainRn6,473 chainRn6,523 chainRn6,528 chainRn6,543 chainRn6,776 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 est,232 est,281 gap,86 genscan,27 genscan,52 intronEst,313 intronEst,362 mrna,178 mrna,227 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netRn6,330 netRn6,356 netRn6,459 netRn6,473 netRn6,523 netRn6,528 netRn6,543 netRn6,776 refSeqComposite,132 refSeqComposite,182 refSeqComposite,239 refSeqComposite,253 refSeqComposite,361 refSeqComposite,517 refSeqComposite,570 refSeqComposite,976 refSeqComposite,1120 refSeqComposite,1601 refSeqComposite,1643 refSeqComposite,1681 refSeqComposite,1706 refSeqComposite,1775 rmsk,74 transMapEnsemblV5,570 transMapEnsemblV5,807 transMapEstV5,539 transMapEstV5,776 transMapRefSeqV5,539 transMapRefSeqV5,776 transMapRnaV5,539 transMapRnaV5,776 transMapV5,103 transMapV5,645 transMapV5,882 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,345 once est,266 intronEst,347 mrna,212 uniprot,647 one augustusGene,169 chainNetRn6,195 chainNetRn6,367 chainNetRn6,513 chainNetRn6,806 chainNetRn6,902 chainRn6,192 chainRn6,364 chainRn6,510 chainRn6,803 chainRn6,899 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 est,173 est,284 est,317 gold,156 intronEst,69 intronEst,254 intronEst,365 intronEst,398 mrna,119 mrna,230 mrna,263 netRn6,192 netRn6,364 netRn6,510 netRn6,803 netRn6,899 transMapV5,78 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainNetRn6,363 chainRn6,360 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 est,157 est,297 est,370 est,403 est,701 intronEst,238 intronEst,378 intronEst,451 intronEst,484 intronEst,782 microsat,61 mrna,103 mrna,243 mrna,316 mrna,417 netRn6,360 refSeqComposite,158 refSeqComposite,218 refSeqComposite,235 refSeqComposite,247 refSeqComposite,516 refSeqComposite,568 refSeqComposite,1266 refSeqComposite,1538 transMapEnsemblV5,49 transMapEnsemblV5,653 transMapEstV5,622 transMapRefSeqV5,622 transMapRnaV5,622 transMapV5,728 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,210 xenoRefGene,256 oommen transMapEnsemblV5,731 transMapEstV5,700 transMapRefSeqV5,700 transMapRnaV5,700 transMapV5,806 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainNetRn6,558 chainRn6,555 netRn6,555 option augustusGene,167 augustusGene,187 est,416 genscan,94 intronEst,497 mrna,353 refSeqComposite,777 refSeqComposite,842 transMapEnsemblV5,135 transMapEstV5,104 transMapRefSeqV5,104 transMapRnaV5,104 transMapV5,210 xenoRefGene,114 xenoRefGene,166 optional refSeqComposite,820 xenoRefGene,144 options est,445 gc5BaseBw,70 genscan,85 intronEst,526 mrna,384 or chainNetRn6,34 chainNetRn6,134 chainNetRn6,157 chainNetRn6,190 chainNetRn6,497 chainNetRn6,874 chainNetRn6,903 chainRn6,31 chainRn6,131 chainRn6,154 chainRn6,187 chainRn6,494 chainRn6,871 chainRn6,900 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 est,174 est,309 est,328 est,337 est,402 est,480 est,512 est,526 intronEst,255 intronEst,390 intronEst,409 intronEst,418 intronEst,483 intronEst,561 intronEst,593 intronEst,607 mrna,120 mrna,255 mrna,274 mrna,283 ncbiRefSeqCurated,11 ncbiRefSeqOther,13 ncbiRefSeqPredicted,9 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netRn6,31 netRn6,131 netRn6,154 netRn6,187 netRn6,494 netRn6,871 netRn6,900 refSeqComposite,86 refSeqComposite,122 refSeqComposite,228 refSeqComposite,280 refSeqComposite,355 refSeqComposite,401 refSeqComposite,410 refSeqComposite,416 refSeqComposite,425 refSeqComposite,623 refSeqComposite,644 refSeqComposite,692 refSeqComposite,783 refSeqComposite,793 refSeqComposite,808 refSeqComposite,952 refSeqComposite,974 refSeqComposite,1053 refSeqComposite,1315 refSeqComposite,1330 refSeqComposite,1497 refSeqComposite,1519 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,534 transMapEnsemblV5,562 transMapEnsemblV5,605 transMapEnsemblV5,625 transMapEstV5,503 transMapEstV5,531 transMapEstV5,574 transMapEstV5,594 transMapRefSeqV5,503 transMapRefSeqV5,531 transMapRefSeqV5,574 transMapRefSeqV5,594 transMapRnaV5,503 transMapRnaV5,531 transMapRnaV5,574 transMapRnaV5,594 transMapV5,47 transMapV5,609 transMapV5,637 transMapV5,680 transMapV5,700 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,132 order gap,80 gold,111 uniprot,872 organ est,198 est,204 intronEst,279 intronEst,285 mrna,144 mrna,150 organism chainNetRn6,342 chainNetRn6,372 chainRn6,339 chainRn6,369 netRn6,339 netRn6,369 organisms chainNetRn6,919 chainRn6,916 nestedRepeats,295 netRn6,916 rmsk,302 transMapEnsemblV5,160 transMapEnsemblV5,218 transMapEstV5,129 transMapEstV5,187 transMapRefSeqV5,129 transMapRefSeqV5,187 transMapRnaV5,129 transMapRnaV5,187 transMapV5,65 transMapV5,153 transMapV5,235 transMapV5,293 uniprot,998 xenoRefGene,21 organized refSeqComposite,1378 organizes chainNetRn6,627 chainRn6,624 netRn6,624 orientation chainNetRn6,559 chainRn6,556 cytoBandIdeo,6 gap,82 gold,113 netRn6,556 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 orthologous transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs chainNetRn6,295 chainRn6,292 netRn6,292 transMapV5,95 ostell est,757 est,781 intronEst,841 intronEst,865 mrna,474 mrna,498 other augustusGene,208 chainNetRn6,28 chainNetRn6,424 chainNetRn6,517 chainRn6,25 chainRn6,421 chainRn6,514 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 ncbiRefSeqOther,2 ncbiRefSeqOther,5 nestedRepeats,376 netRn6,25 netRn6,421 netRn6,514 refSeqComposite,275 refSeqComposite,379 refSeqComposite,382 refSeqComposite,1372 refSeqComposite,1398 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,371 transMapEstV5,28 transMapEstV5,340 transMapRefSeqV5,28 transMapRefSeqV5,340 transMapRnaV5,28 transMapRnaV5,340 transMapV5,27 transMapV5,446 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,22 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 est,682 intronEst,763 transMapEnsemblV5,248 transMapEstV5,217 transMapRefSeqV5,217 transMapRnaV5,217 transMapV5,323 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 refSeqComposite,138 refSeqComposite,1326 refSeqComposite,1333 refSeqComposite,1349 refSeqComposite,1364 refSeqComposite,1488 refSeqComposite,1508 refSeqComposite,1629 refSeqComposite,1682 refSeqComposite,1689 refSeqComposite,1707 rmsk,124 rmsk,129 transMapEnsemblV5,559 transMapEnsemblV5,565 transMapEnsemblV5,575 transMapEnsemblV5,614 transMapEstV5,528 transMapEstV5,534 transMapEstV5,544 transMapEstV5,583 transMapRefSeqV5,528 transMapRefSeqV5,534 transMapRefSeqV5,544 transMapRefSeqV5,583 transMapRnaV5,528 transMapRnaV5,534 transMapRnaV5,544 transMapRnaV5,583 transMapV5,634 transMapV5,640 transMapV5,650 transMapV5,689 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainNetRn6,648 chainRn6,645 netRn6,645 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside est,617 intronEst,698 refSeqComposite,690 uniprot,558 over chainNetRn6,203 chainNetRn6,663 chainRn6,200 chainRn6,660 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netRn6,200 netRn6,660 refSeqComposite,1035 uniprot,522 uniprot,536 overlapping chainNetRn6,119 chainNetRn6,183 chainRn6,116 chainRn6,180 netRn6,116 netRn6,180 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainNetRn6,1047 chainRn6,1044 netRn6,1044 pack chainNetRn6,240 chainRn6,237 nestedRepeats,116 netRn6,237 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 est,113 est,425 est,446 genscan,78 genscan,123 intronEst,194 intronEst,506 intronEst,527 mrna,59 mrna,364 mrna,385 refSeqComposite,114 refSeqComposite,742 refSeqComposite,867 refSeqComposite,1127 refSeqComposite,1646 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,100 xenoRefGene,191 pages chainNetRn6,784 chainRn6,781 netRn6,781 pair gap,96 pairwise chainNetRn6,1025 chainNetRn6,1043 chainRn6,1022 chainRn6,1040 netRn6,1022 netRn6,1040 transMapEnsemblV5,339 transMapEstV5,308 transMapRefSeqV5,308 transMapRnaV5,308 transMapV5,84 transMapV5,414 paralogous transMapEnsemblV5,302 transMapEstV5,271 transMapRefSeqV5,271 transMapRnaV5,271 transMapV5,377 paralogs chainNetRn6,233 chainRn6,230 netRn6,230 transMapV5,161 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parenthesis gold,148 part chainNetRn6,281 chainRn6,278 netRn6,278 refSeqComposite,527 particular augustusGene,234 chainNetRn6,205 chainRn6,202 netRn6,202 refSeqComposite,297 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainNetRn6,43 chainNetRn6,54 chainRn6,40 chainRn6,51 netRn6,40 netRn6,51 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainNetRn6,930 chainNetRn6,1033 chainRn6,927 chainRn6,1030 netRn6,927 netRn6,1030 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 est,608 intronEst,689 period microsat,65 permitted rmsk,314 ph.d chainNetRn6,1030 chainRn6,1027 netRn6,1027 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 pia uniprot,1971 pick uniprot,1089 pipeline refSeqComposite,1193 uniprot,1537 pipelines uniprot,1850 place chainNetRn6,803 chainRn6,800 netRn6,800 placed chainNetRn6,845 chainRn6,842 netRn6,842 placement refSeqComposite,968 places est,691 intronEst,772 mrna,407 refSeqComposite,1256 xenoRefGene,246 plasmid est,469 intronEst,550 please ensGene,41 ensGene,160 refSeqComposite,103 refSeqComposite,1113 refSeqComposite,1686 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,811 transMapEstV5,780 transMapRefSeqV5,780 transMapRnaV5,780 transMapV5,886 plus refSeqComposite,902 pmc chainNetRn6,1092 chainNetRn6,1123 chainRn6,1089 chainRn6,1120 ensGene,206 est,773 est,799 est,817 intronEst,857 intronEst,883 intronEst,901 microsat,136 mrna,490 mrna,516 mrna,534 netRn6,1089 netRn6,1120 refSeqComposite,1748 refSeqComposite,1790 refSeqComposite,1824 simpleRepeat,96 transMapEnsemblV5,755 transMapEnsemblV5,821 transMapEstV5,724 transMapEstV5,790 transMapRefSeqV5,724 transMapRefSeqV5,790 transMapRnaV5,724 transMapRnaV5,790 transMapV5,830 transMapV5,896 uniprot,2008 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,818 intronEst,902 mrna,535 refSeqComposite,1749 xenoRefGene,319 pmc208784 chainNetRn6,1093 chainRn6,1090 netRn6,1090 pmc2099585 transMapEnsemblV5,756 transMapEstV5,725 transMapRefSeqV5,725 transMapRnaV5,725 transMapV5,831 pmc2134963 transMapEnsemblV5,822 transMapEstV5,791 transMapRefSeqV5,791 transMapRnaV5,791 transMapV5,897 pmc308779 est,800 intronEst,884 mrna,517 pmc3245120 uniprot,2009 pmc3531190 est,774 intronEst,858 mrna,491 pmc3965018 refSeqComposite,1791 xenoRefGene,361 pmc430961 chainNetRn6,1124 chainRn6,1121 netRn6,1121 pmc539979 refSeqComposite,1825 xenoRefGene,395 pmc99161 ensGene,207 pmid augustusGene,314 augustusGene,339 chainNetRn6,1052 chainNetRn6,1090 chainNetRn6,1121 chainRn6,1049 chainRn6,1087 chainRn6,1118 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 est,771 est,797 est,815 genscan,229 intronEst,855 intronEst,881 intronEst,899 microsat,134 mrna,488 mrna,514 mrna,532 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netRn6,1049 netRn6,1087 netRn6,1118 refSeqComposite,1746 refSeqComposite,1788 refSeqComposite,1822 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,753 transMapEnsemblV5,785 transMapEnsemblV5,819 transMapEstV5,722 transMapEstV5,754 transMapEstV5,788 transMapRefSeqV5,722 transMapRefSeqV5,754 transMapRefSeqV5,788 transMapRnaV5,722 transMapRnaV5,754 transMapRnaV5,788 transMapV5,828 transMapV5,860 transMapV5,894 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,551 intronEst,632 rmsk,269 poly-a augustusGene,62 est,503 est,577 intronEst,584 intronEst,658 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainNetRn6,719 chainRn6,716 netRn6,716 refSeqComposite,987 uniprot,610 positions uniprot,1495 possible chainNetRn6,418 chainRn6,415 netRn6,415 refSeqComposite,186 uniprot,601 possibly chainNetRn6,294 chainRn6,291 netRn6,291 simpleRepeat,18 post-alignment transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled refSeqComposite,1523 transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 ncbiRefSeq,8 ncbiRefSeqPredicted,2 ncbiRefSeqPredicted,6 refSeqComposite,204 refSeqComposite,340 refSeqComposite,359 refSeqComposite,404 refSeqComposite,593 refSeqComposite,619 refSeqComposite,695 refSeqComposite,715 refSeqComposite,1416 refSeqComposite,1676 uniprot,48 uniprot,193 xenoRefGene,70 prediction augustusGene,321 genscan,73 genscan,211 refSeqComposite,376 refSeqComposite,604 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 ncbiRefSeq,18 ncbiRefSeqCurated,16 ncbiRefSeqGenomicDiff,15 ncbiRefSeqOther,18 ncbiRefSeqPredicted,14 ncbiRefSeqPsl,10 refSeqComposite,10 refSeqComposite,833 refSeqComposite,862 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5BaseBw,80 ucscToINSDC,49 ucscToRefSeq,43 uniprot,712 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 refSeqComposite,1224 refSeqComposite,1340 refSeqComposite,1695 uniprot,1654 previously chainNetRn6,923 chainRn6,920 netRn6,920 refSeqComposite,504 primary unipStruct,4 uniprot,360 primed est,495 intronEst,576 primer est,482 intronEst,563 priming est,578 intronEst,659 principal gap,121 pringle transMapEnsemblV5,795 transMapEstV5,764 transMapRefSeqV5,764 transMapRnaV5,764 transMapV5,870 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainNetRn6,1077 chainRn6,1074 netRn6,1074 procedure uniprot,990 procedures gap,23 gold,25 process chainNetRn6,827 chainRn6,824 netRn6,824 refSeqComposite,651 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainNetRn6,221 chainRn6,218 netRn6,218 processing refSeqComposite,1338 produced est,729 intronEst,813 mrna,446 refSeqComposite,384 refSeqComposite,1715 transMapEnsemblV5,22 transMapEnsemblV5,680 transMapEnsemblV5,704 transMapEstV5,20 transMapEstV5,649 transMapEstV5,673 transMapRefSeqV5,20 transMapRefSeqV5,649 transMapRefSeqV5,673 transMapRnaV5,20 transMapRnaV5,649 transMapRnaV5,673 transMapV5,19 transMapV5,142 transMapV5,755 transMapV5,779 xenoRefGene,284 produces refSeqComposite,49 products unipChain,5 program augustusGene,21 augustusGene,257 chainNetRn6,618 chainNetRn6,659 chainNetRn6,797 chainNetRn6,850 chainNetRn6,882 chainNetRn6,958 chainNetRn6,961 chainRn6,615 chainRn6,656 chainRn6,794 chainRn6,847 chainRn6,879 chainRn6,955 chainRn6,958 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,399 nestedRepeats,30 netRn6,615 netRn6,656 netRn6,794 netRn6,847 netRn6,879 netRn6,955 netRn6,958 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,315 transMapEstV5,284 transMapRefSeqV5,284 transMapRnaV5,284 transMapV5,390 uniprot,1529 programmatic ensGene,99 programmatically refSeqComposite,1324 programs chainNetRn6,1007 chainRn6,1004 netRn6,1004 uniprot,1877 project ensGene,194 refSeqComposite,1162 refSeqComposite,1730 xenoRefGene,301 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,322 transMapEstV5,291 transMapRefSeqV5,291 transMapRnaV5,291 transMapV5,397 projects est,572 est,591 est,621 intronEst,653 intronEst,672 intronEst,702 transMapEnsemblV5,712 transMapEstV5,681 transMapRefSeqV5,681 transMapRnaV5,681 transMapV5,787 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 properties refSeqComposite,722 prot.bed uniprot,1931 uniprot,1933 protein refSeqComposite,269 refSeqComposite,362 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refSeqComposite,21 refSeqComposite,237 refSeqComposite,543 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins refSeqComposite,1811 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 protocadherin refSeqComposite,417 provide uniprot,1860 provided refSeqComposite,38 refSeqComposite,69 refSeqComposite,206 refSeqComposite,445 uniprot,817 provides gap,33 gold,35 uniprot,489 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refSeqComposite,621 refSeqComposite,670 xenoRefGene,72 pruitt refSeqComposite,1750 refSeqComposite,1792 xenoRefGene,320 xenoRefGene,362 pseudogenes chainNetRn6,222 chainNetRn6,236 chainRn6,219 chainRn6,233 netRn6,219 netRn6,233 refSeqComposite,409 uniprot,1184 psl est,57 intronEst,141 mrna,38 refSeqComposite,455 refSeqComposite,1179 refSeqComposite,1421 transMapEnsemblV5,103 transMapEstV5,72 transMapRefSeqV5,72 transMapRnaV5,72 transMapV5,178 uniprot,1479 pslcdnafilter transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 pslmap transMapEnsemblV5,314 transMapEstV5,283 transMapRefSeqV5,283 transMapRnaV5,283 transMapV5,389 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 est,740 intronEst,824 mrna,457 refSeqComposite,1327 refSeqComposite,1630 transMapEnsemblV5,696 transMapEstV5,665 transMapRefSeqV5,665 transMapRnaV5,665 transMapV5,771 uniprot,709 publications refSeqComposite,254 refSeqComposite,424 uniprot,38 publicly nestedRepeats,275 pull-down refSeqComposite,849 xenoRefGene,173 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainNetRn6,731 chainRn6,728 netRn6,728 quality est,75 mrna,56 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 query rmsk,47 rmsk,61 uniprot,1484 questions refSeqComposite,1694 uniprot,1834 quickly mrna,341 refSeqComposite,828 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,152 quite simpleRepeat,45 quot chainNetRn6,30 chainNetRn6,32 chainNetRn6,37 chainNetRn6,39 chainNetRn6,108 chainNetRn6,110 chainNetRn6,239 chainNetRn6,241 chainNetRn6,243 chainNetRn6,245 chainNetRn6,350 chainNetRn6,352 chainNetRn6,693 chainNetRn6,695 chainRn6,27 chainRn6,29 chainRn6,34 chainRn6,36 chainRn6,105 chainRn6,107 chainRn6,236 chainRn6,238 chainRn6,240 chainRn6,242 chainRn6,347 chainRn6,349 chainRn6,690 chainRn6,692 est,241 est,243 est,292 est,294 est,308 est,310 est,344 est,346 est,361 est,363 gc5BaseBw,58 gc5BaseBw,62 intronEst,322 intronEst,324 intronEst,373 intronEst,375 intronEst,389 intronEst,391 intronEst,425 intronEst,427 intronEst,442 intronEst,444 mrna,187 mrna,189 mrna,238 mrna,240 mrna,254 mrna,256 mrna,290 mrna,292 mrna,307 mrna,309 netRn6,27 netRn6,29 netRn6,34 netRn6,36 netRn6,105 netRn6,107 netRn6,236 netRn6,238 netRn6,240 netRn6,242 netRn6,347 netRn6,349 netRn6,690 netRn6,692 refSeqComposite,508 refSeqComposite,511 refSeqComposite,1435 refSeqComposite,1437 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainNetRn6,1057 chainNetRn6,1103 chainRn6,1054 chainRn6,1100 nestedRepeats,327 netRn6,1054 netRn6,1100 rmsk,350 transMapEnsemblV5,762 transMapEstV5,731 transMapRefSeqV5,731 transMapRnaV5,731 transMapV5,837 windowmaskerSdust,99 r.s chainNetRn6,1022 chainRn6,1019 netRn6,1019 random augustusGene,119 est,574 intronEst,655 random-primed est,620 intronEst,701 raney uniprot,1960 range gap,136 nestedRepeats,227 nestedRepeats,236 refSeqComposite,988 transMapEnsemblV5,658 transMapEstV5,627 transMapRefSeqV5,627 transMapRnaV5,627 transMapV5,733 uniprot,1809 ranked chainNetRn6,794 chainRn6,791 netRn6,791 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 rat chainNetRn6,1 chainNetRn6,4 chainNetRn6,69 chainNetRn6,102 chainNetRn6,155 chainNetRn6,275 chainNetRn6,302 chainNetRn6,584 chainNetRn6,633 chainNetRn6Viewchain,2 chainNetRn6Viewnet,2 chainRn6,1 chainRn6,3 chainRn6,66 chainRn6,99 chainRn6,152 chainRn6,272 chainRn6,299 chainRn6,581 chainRn6,630 netRn6,1 netRn6,3 netRn6,66 netRn6,99 netRn6,152 netRn6,272 netRn6,299 netRn6,581 netRn6,630 rather est,575 intronEst,656 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw refSeqComposite,1293 transMapEnsemblV5,521 transMapEstV5,490 transMapRefSeqV5,490 transMapRnaV5,490 transMapV5,596 uniprot,1708 rc chainNetRn6,1105 chainRn6,1102 netRn6,1102 rmsk,200 read est,473 gap,95 intronEst,554 refSeqComposite,1462 realigning refSeqComposite,51 realignment refSeqComposite,59 refSeqComposite,488 rearrangement chainNetRn6,300 chainNetRn6,504 chainNetRn6,1070 chainRn6,297 chainRn6,501 chainRn6,1067 netRn6,297 netRn6,501 netRn6,1067 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 reasonably est,541 est,564 intronEst,622 intronEst,645 recently uniprot,1186 reciprocal transMapEnsemblV5,241 transMapEstV5,210 transMapRefSeqV5,210 transMapRnaV5,210 transMapV5,66 transMapV5,316 record refSeqComposite,616 refSeqComposite,637 refSeqComposite,673 refSeqComposite,698 refSeqComposite,713 uniprot,496 xenoRefGene,67 records refSeqComposite,128 refSeqComposite,662 reduced intronEst,106 refer ensGene,42 genscan,144 refSeqComposite,1687 uniprot,1827 reference ncbiRefSeqGenomicDiff,10 refSeqComposite,30 refSeqComposite,111 refSeqComposite,466 refSeqComposite,880 refSeqComposite,1090 refSeqComposite,1777 refSeqComposite,1799 ucscToRefSeq,23 uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainNetRn6,1020 chainRn6,1017 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 est,746 genscan,152 genscan,179 intronEst,830 microsat,113 mrna,463 nestedRepeats,66 nestedRepeats,323 netRn6,1017 refSeqComposite,1731 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,713 transMapEstV5,682 transMapRefSeqV5,682 transMapRnaV5,682 transMapV5,788 uniprot,1984 windowmaskerSdust,89 xenoRefGene,302 refgene refSeqComposite,1420 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,2 transMapRefSeqV5,564 transMapRnaV5,564 transMapV5,670 reflects rmsk,213 refseq ncbiRefSeq,1 ncbiRefSeq,4 ncbiRefSeqCurated,1 ncbiRefSeqCurated,4 ncbiRefSeqGenomicDiff,1 ncbiRefSeqGenomicDiff,6 ncbiRefSeqOther,1 ncbiRefSeqOther,4 ncbiRefSeqPredicted,1 ncbiRefSeqPredicted,4 ncbiRefSeqPsl,1 ncbiRefSeqPsl,3 refSeqComposite,2 refSeqComposite,3 refSeqComposite,14 refSeqComposite,33 refSeqComposite,40 refSeqComposite,45 refSeqComposite,53 refSeqComposite,84 refSeqComposite,87 refSeqComposite,113 refSeqComposite,127 refSeqComposite,189 refSeqComposite,196 refSeqComposite,198 refSeqComposite,208 refSeqComposite,209 refSeqComposite,214 refSeqComposite,314 refSeqComposite,335 refSeqComposite,339 refSeqComposite,344 refSeqComposite,378 refSeqComposite,387 refSeqComposite,399 refSeqComposite,403 refSeqComposite,433 refSeqComposite,438 refSeqComposite,448 refSeqComposite,457 refSeqComposite,470 refSeqComposite,481 refSeqComposite,509 refSeqComposite,513 refSeqComposite,522 refSeqComposite,530 refSeqComposite,547 refSeqComposite,549 refSeqComposite,555 refSeqComposite,582 refSeqComposite,588 refSeqComposite,590 refSeqComposite,592 refSeqComposite,596 refSeqComposite,615 refSeqComposite,629 refSeqComposite,636 refSeqComposite,661 refSeqComposite,672 refSeqComposite,697 refSeqComposite,712 refSeqComposite,869 refSeqComposite,885 refSeqComposite,1096 refSeqComposite,1116 refSeqComposite,1131 refSeqComposite,1145 refSeqComposite,1148 refSeqComposite,1161 refSeqComposite,1168 refSeqComposite,1199 refSeqComposite,1209 refSeqComposite,1214 refSeqComposite,1225 refSeqComposite,1228 refSeqComposite,1357 refSeqComposite,1371 refSeqComposite,1374 refSeqComposite,1409 refSeqComposite,1412 refSeqComposite,1415 refSeqComposite,1419 refSeqComposite,1423 refSeqComposite,1573 refSeqComposite,1670 refSeqComposite,1672 refSeqComposite,1675 refSeqComposite,1729 refSeqComposite,1772 refSeqComposite,1801 transMapEnsemblV5,170 transMapEnsemblV5,707 transMapEstV5,139 transMapEstV5,676 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,139 transMapRefSeqV5,676 transMapRnaV5,139 transMapRnaV5,676 transMapV5,245 transMapV5,782 ucscToRefSeq,1 ucscToRefSeq,3 ucscToRefSeq,26 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 refseqdiffs refSeqComposite,1476 refseqother refSeqComposite,1474 regeneron uniprot,1968 region chainNetRn6,206 chainNetRn6,407 chainRn6,203 chainRn6,404 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netRn6,203 netRn6,404 refSeqComposite,991 refSeqComposite,1543 uniprot,312 regions augustusGene,76 chainNetRn6,20 chainNetRn6,141 chainNetRn6,293 chainRn6,17 chainRn6,138 chainRn6,290 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netRn6,17 netRn6,138 netRn6,290 refSeqComposite,1496 simpleRepeat,39 transMapEnsemblV5,303 transMapEnsemblV5,604 transMapEstV5,272 transMapEstV5,573 transMapRefSeqV5,272 transMapRefSeqV5,573 transMapRnaV5,272 transMapRnaV5,573 transMapV5,378 transMapV5,679 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,75 uniprot,551 relationship chainNetRn6,860 chainRn6,857 est,96 intronEst,177 netRn6,857 relative chainNetRn6,876 chainRn6,873 gap,79 gold,110 netRn6,873 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release refSeqComposite,1118 uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,241 mrna,106 uniprot,681 remain uniprot,1189 remaining chainNetRn6,699 chainRn6,696 netRn6,696 removed chainNetRn6,589 chainRn6,586 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netRn6,586 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,308 transMapEstV5,277 transMapRefSeqV5,277 transMapRnaV5,277 transMapV5,383 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainNetRn6,957 chainRn6,954 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netRn6,954 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainNetRn6,949 chainRn6,946 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netRn6,946 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 refSeqComposite,981 refSeqComposite,1009 rmsk,374 uniprot,1400 reporting refSeqComposite,1093 represent chainNetRn6,139 chainNetRn6,167 chainNetRn6,454 chainNetRn6,459 chainRn6,136 chainRn6,164 chainRn6,451 chainRn6,456 est,41 intronEst,52 netRn6,136 netRn6,164 netRn6,451 netRn6,456 representative refSeqComposite,540 represented gap,70 rmsk,49 representing gap,113 reproducibility uniprot,1645 required refSeqComposite,910 refSeqComposite,924 requirements refSeqComposite,394 requiring intronEst,94 res chainNetRn6,1115 chainRn6,1112 ensGene,197 est,764 est,789 est,809 intronEst,848 intronEst,873 intronEst,893 microsat,127 mrna,481 mrna,506 mrna,526 netRn6,1112 refSeqComposite,1740 refSeqComposite,1781 refSeqComposite,1814 simpleRepeat,87 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 uniprot,1999 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 research nestedRepeats,54 refSeqComposite,1104 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 refSeqComposite,1311 restricted refSeqComposite,581 result chainNetRn6,180 chainRn6,177 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netRn6,177 refSeqComposite,61 transMapEnsemblV5,507 transMapEstV5,476 transMapRefSeqV5,476 transMapRnaV5,476 transMapV5,582 uniprot,798 uniprot,1065 uniprot,1170 resulting chainNetRn6,608 chainRn6,605 netRn6,605 refSeqComposite,285 transMapEnsemblV5,81 transMapEnsemblV5,337 transMapEnsemblV5,349 transMapEnsemblV5,494 transMapEstV5,50 transMapEstV5,306 transMapEstV5,318 transMapEstV5,463 transMapRefSeqV5,50 transMapRefSeqV5,306 transMapRefSeqV5,318 transMapRefSeqV5,463 transMapRnaV5,50 transMapRnaV5,306 transMapRnaV5,318 transMapRnaV5,463 transMapV5,51 transMapV5,412 transMapV5,424 transMapV5,569 uniprot,874 uniprot,1137 uniprot,1308 results refSeqComposite,1102 uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,583 intronEst,664 retroposons rmsk,173 reverse est,458 est,492 est,509 intronEst,539 intronEst,573 intronEst,590 review refSeqComposite,613 refSeqComposite,633 refSeqComposite,650 refSeqComposite,681 refSeqComposite,706 xenoRefGene,64 reviewed refSeqComposite,624 refSeqComposite,634 refSeqComposite,640 xenoRefGene,74 reviews refSeqComposite,259 rgsc chainNetRn6,7 chainNetRn6,72 chainNetRn6,313 chainNetRn6Viewchain,5 chainNetRn6Viewnet,5 chainRn6,6 chainRn6,69 chainRn6,310 netRn6,6 netRn6,69 netRn6,310 riestra uniprot,1972 right refSeqComposite,975 rightmost refSeqComposite,1017 rn6 chainNetRn6,9 chainNetRn6,74 chainNetRn6,315 chainNetRn6Viewchain,7 chainNetRn6Viewnet,7 chainRn6,8 chainRn6,71 chainRn6,312 netRn6,8 netRn6,71 netRn6,312 rna est,104 est,452 intronEst,185 intronEst,533 refSeqComposite,29 refSeqComposite,1089 refSeqComposite,1149 refSeqComposite,1210 refSeqComposite,1252 refSeqComposite,1660 rmsk,186 rmsk,189 transMapEnsemblV5,598 transMapEstV5,567 transMapRefSeqV5,567 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,567 transMapV5,673 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rna-seq refSeqComposite,75 refSeqComposite,366 rnas ncbiRefSeqPsl,6 refSeqComposite,54 refSeqComposite,439 refSeqComposite,490 refSeqComposite,1229 xenoRefGene,219 robert chainNetRn6,997 chainRn6,994 nestedRepeats,307 netRn6,994 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainNetRn6,946 chainRn6,943 netRn6,943 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainNetRn6,662 chainRn6,659 netRn6,659 refSeqComposite,1610 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainNetRn6,1065 chainNetRn6,1082 chainNetRn6,1095 chainRn6,1062 chainRn6,1079 chainRn6,1092 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netRn6,1062 netRn6,1079 netRn6,1092 refSeqComposite,106 refSeqComposite,319 refSeqComposite,468 refSeqComposite,487 refSeqComposite,1123 refSeqComposite,1208 rmsk,18 rmsk,293 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 uniprot,751 uniprot,774 saccharomyces augustusGene,223 safely refSeqComposite,1455 salzberg genscan,189 same chainNetRn6,533 chainNetRn6,548 chainRn6,530 chainRn6,545 nestedRepeats,143 netRn6,530 netRn6,545 refSeqComposite,1221 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,789 transMapEstV5,758 transMapRefSeqV5,758 transMapRnaV5,758 transMapV5,864 santa chainNetRn6,970 chainNetRn6,1015 chainRn6,967 chainRn6,1012 netRn6,967 netRn6,1012 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers est,759 intronEst,843 mrna,476 scaffold gap,125 gold,81 gold,119 scaffolds gap,128 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainNetRn6,937 chainNetRn6,1094 chainRn6,934 chainRn6,1091 netRn6,934 netRn6,1091 sci chainNetRn6,1080 chainRn6,1077 netRn6,1077 science genscan,203 scientific refSeqComposite,282 uniprot,37 scientists est,744 intronEst,828 mrna,461 refSeqComposite,1722 transMapEnsemblV5,700 transMapEstV5,669 transMapRefSeqV5,669 transMapRnaV5,669 transMapV5,775 xenoRefGene,293 score chainNetRn6,691 chainRn6,688 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netRn6,688 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainNetRn6,83 chainNetRn6,93 chainNetRn6,670 chainNetRn6,687 chainNetRn6,1042 chainRn6,80 chainRn6,90 chainRn6,667 chainRn6,684 chainRn6,1039 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netRn6,80 netRn6,90 netRn6,667 netRn6,684 netRn6,1039 scott chainNetRn6,936 chainRn6,933 netRn6,933 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search transMapEnsemblV5,801 transMapEstV5,770 transMapRefSeqV5,770 transMapRnaV5,770 transMapV5,876 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 genscan,153 nestedRepeats,67 refSeqComposite,92 refSeqComposite,1655 rmsk,103 uniprot,897 sections chainNetRn6,817 chainRn6,814 netRn6,814 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 intronEst,124 microsat,101 nestedRepeats,296 nestedRepeats,370 refSeqComposite,89 refSeqComposite,137 refSeqComposite,337 refSeqComposite,545 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,231 transMapEnsemblV5,574 transMapEstV5,200 transMapEstV5,543 transMapRefSeqV5,200 transMapRefSeqV5,543 transMapRnaV5,200 transMapRnaV5,543 transMapV5,306 transMapV5,649 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refSeqComposite,514 refSeqComposite,531 refSeqComposite,535 refSeqComposite,548 refSeqComposite,838 xenoRefGene,162 selected est,296 est,312 est,365 intronEst,377 intronEst,393 intronEst,446 mrna,242 mrna,258 mrna,311 refSeqComposite,160 transMapEnsemblV5,214 transMapEnsemblV5,251 transMapEnsemblV5,262 transMapEnsemblV5,330 transMapEstV5,183 transMapEstV5,220 transMapEstV5,231 transMapEstV5,299 transMapRefSeqV5,183 transMapRefSeqV5,220 transMapRefSeqV5,231 transMapRefSeqV5,299 transMapRnaV5,183 transMapRnaV5,220 transMapRnaV5,231 transMapRnaV5,299 transMapV5,289 transMapV5,326 transMapV5,337 transMapV5,405 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,148 sep chainNetRn6,1085 chainRn6,1082 nestedRepeats,356 netRn6,1082 rmsk,379 separated est,267 intronEst,348 mrna,213 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 chainNetRn6,174 chainNetRn6,303 chainNetRn6,1045 chainRn6,171 chainRn6,300 chainRn6,1042 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 est,21 est,92 est,401 est,410 est,584 est,722 est,734 est,741 gap,55 gold,54 gold,158 intronEst,22 intronEst,75 intronEst,173 intronEst,482 intronEst,491 intronEst,665 intronEst,803 intronEst,818 intronEst,825 mrna,347 mrna,438 mrna,451 mrna,458 netRn6,171 netRn6,300 netRn6,1042 refSeqComposite,655 refSeqComposite,666 refSeqComposite,882 refSeqComposite,982 refSeqComposite,1010 refSeqComposite,1037 refSeqComposite,1049 refSeqComposite,1082 refSeqComposite,1086 refSeqComposite,1091 refSeqComposite,1287 refSeqComposite,1800 refSeqComposite,1805 rmsk,48 rmsk,62 transMapEnsemblV5,129 transMapEnsemblV5,690 transMapEnsemblV5,697 transMapEstV5,98 transMapEstV5,659 transMapEstV5,666 transMapRefSeqV5,98 transMapRefSeqV5,659 transMapRefSeqV5,666 transMapRnaV5,98 transMapRnaV5,659 transMapRnaV5,666 transMapV5,204 transMapV5,765 transMapV5,772 ucscToINSDC,7 ucscToINSDC,29 ucscToRefSeq,24 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequence-to-gene refSeqComposite,684 sequenced windowmaskerSdust,104 sequences est,32 est,603 est,611 gold,13 intronEst,43 intronEst,684 intronEst,692 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refSeqComposite,31 refSeqComposite,112 refSeqComposite,270 refSeqComposite,286 refSeqComposite,887 refSeqComposite,1097 refSeqComposite,1661 refSeqComposite,1778 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,32 xenoRefGene,348 sequencing chainNetRn6,899 chainRn6,896 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netRn6,896 ucscToINSDC,12 ucscToRefSeq,7 server ensGene,144 refSeqComposite,1329 refSeqComposite,1335 refSeqComposite,1351 refSeqComposite,1490 refSeqComposite,1605 refSeqComposite,1632 refSeqComposite,1684 refSeqComposite,1710 transMapEnsemblV5,561 transMapEstV5,530 transMapRefSeqV5,530 transMapRnaV5,530 transMapV5,636 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set refSeqComposite,161 refSeqComposite,1500 refSeqComposite,1637 refSeqComposite,1700 transMapEnsemblV5,281 transMapEstV5,250 transMapRefSeqV5,250 transMapRnaV5,250 transMapV5,356 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 refSeqComposite,155 setting refSeqComposite,1041 refSeqComposite,1068 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 refSeqComposite,746 several est,426 intronEst,507 mrna,365 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 shade nestedRepeats,194 shaded est,70 mrna,51 nestedRepeats,182 shades nestedRepeats,202 shading intronEst,149 nestedRepeats,240 refSeqComposite,608 rmsk,208 rmsk,239 xenoRefGene,59 shark chainNetRn6,78 chainNetRn6,105 chainNetRn6,163 chainNetRn6,210 chainNetRn6,277 chainNetRn6,285 chainNetRn6,586 chainNetRn6,639 chainRn6,75 chainRn6,102 chainRn6,160 chainRn6,207 chainRn6,274 chainRn6,282 chainRn6,583 chainRn6,636 est,2 est,5 est,19 est,647 gap,18 gold,20 intronEst,4 intronEst,20 intronEst,127 intronEst,728 mrna,2 mrna,5 mrna,20 mrna,389 netRn6,75 netRn6,102 netRn6,160 netRn6,207 netRn6,274 netRn6,282 netRn6,583 netRn6,636 refSeqComposite,20 refSeqComposite,443 refSeqComposite,465 refSeqComposite,499 refSeqComposite,1235 transMapEnsemblV5,91 transMapEnsemblV5,204 transMapEnsemblV5,335 transMapEstV5,60 transMapEstV5,173 transMapEstV5,304 transMapRefSeqV5,60 transMapRefSeqV5,173 transMapRefSeqV5,304 transMapRnaV5,60 transMapRnaV5,173 transMapRnaV5,304 transMapV5,61 transMapV5,279 transMapV5,410 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 shift refSeqComposite,962 shifted refSeqComposite,971 refSeqComposite,1018 short refSeqComposite,929 rmsk,153 uniprot,460 uniprot,978 shortgap refSeqComposite,965 shotgun gold,152 should est,332 est,636 intronEst,413 intronEst,717 mrna,278 show intronEst,31 intronEst,64 refSeqComposite,157 refSeqComposite,791 refSeqComposite,906 refSeqComposite,920 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 showing refSeqComposite,960 shown chainNetRn6,45 chainNetRn6,58 chainRn6,42 chainRn6,55 est,150 gold,102 intronEst,231 microsat,48 mrna,96 netRn6,42 netRn6,55 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainNetRn6,19 chainNetRn6,66 chainNetRn6,272 chainRn6,16 chainRn6,63 chainRn6,269 est,15 gap,10 gc5BaseBw,16 genscan,13 gold,11 intronEst,16 mrna,16 nestedRepeats,17 nestedRepeats,81 netRn6,16 netRn6,63 netRn6,269 refSeqComposite,18 refSeqComposite,1004 refSeqComposite,1015 uniprot,14 uniprot,484 xenoRefGene,14 side est,599 gap,88 intronEst,680 siepel transMapEnsemblV5,714 transMapEstV5,683 transMapRefSeqV5,683 transMapRnaV5,683 transMapV5,789 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 signs intronEst,32 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainNetRn6,106 chainRn6,103 netRn6,103 since chainNetRn6,582 chainRn6,579 netRn6,579 uniprot,1383 sine rmsk,157 single chainNetRn6,133 chainNetRn6,142 chainNetRn6,632 chainNetRn6,637 chainRn6,130 chainRn6,139 chainRn6,629 chainRn6,634 est,633 est,686 intronEst,714 intronEst,767 mrna,402 nestedRepeats,178 netRn6,130 netRn6,139 netRn6,629 netRn6,634 refSeqComposite,534 refSeqComposite,1251 transMapEnsemblV5,480 transMapEstV5,449 transMapRefSeqV5,449 transMapRnaV5,449 transMapV5,555 uniprot,141 xenoRefGene,241 single-lined chainNetRn6,215 chainRn6,212 netRn6,212 single-read est,31 intronEst,42 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 refSeqComposite,272 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,135 skepticism est,641 intronEst,722 skip refSeqComposite,1034 skipped refSeqComposite,1047 sm refSeqComposite,1755 xenoRefGene,325 small refSeqComposite,937 smallsize chainNetRn6,717 chainRn6,714 netRn6,714 smit chainNetRn6,954 chainNetRn6,1098 chainRn6,951 chainRn6,1095 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netRn6,951 netRn6,1095 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainNetRn6,446 chainRn6,443 netRn6,443 refSeqComposite,302 refSeqComposite,1616 uniprot,1135 uniprot,1430 society refSeqComposite,1079 soft-masked rmsk,305 software nestedRepeats,255 refSeqComposite,377 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 est,158 est,555 est,571 est,674 intronEst,239 intronEst,636 intronEst,652 intronEst,755 mrna,104 nestedRepeats,207 refSeqComposite,660 refSeqComposite,708 rmsk,105 rmsk,268 transMapEnsemblV5,299 transMapEnsemblV5,309 transMapEstV5,268 transMapEstV5,278 transMapRefSeqV5,268 transMapRefSeqV5,278 transMapRnaV5,268 transMapRnaV5,278 transMapV5,374 transMapV5,384 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainNetRn6,786 chainRn6,783 netRn6,783 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 refSeqComposite,1517 transMapEnsemblV5,153 transMapEnsemblV5,325 transMapEnsemblV5,343 transMapEnsemblV5,407 transMapEnsemblV5,432 transMapEnsemblV5,623 transMapEnsemblV5,637 transMapEstV5,122 transMapEstV5,294 transMapEstV5,312 transMapEstV5,376 transMapEstV5,401 transMapEstV5,592 transMapEstV5,606 transMapRefSeqV5,122 transMapRefSeqV5,294 transMapRefSeqV5,312 transMapRefSeqV5,376 transMapRefSeqV5,401 transMapRefSeqV5,592 transMapRefSeqV5,606 transMapRnaV5,122 transMapRnaV5,294 transMapRnaV5,312 transMapRnaV5,376 transMapRnaV5,401 transMapRnaV5,592 transMapRnaV5,606 transMapV5,228 transMapV5,400 transMapV5,418 transMapV5,482 transMapV5,507 transMapV5,698 transMapV5,712 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space est,270 intronEst,351 mrna,216 uniprot,1990 spaces gold,100 span chainNetRn6,405 chainRn6,402 netRn6,402 refSeqComposite,1006 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainNetRn6,123 chainNetRn6,177 chainNetRn6,196 chainNetRn6,905 chainRn6,120 chainRn6,174 chainRn6,193 chainRn6,902 netRn6,120 netRn6,174 netRn6,193 netRn6,902 transMapEnsemblV5,32 transMapEnsemblV5,271 transMapEstV5,30 transMapEstV5,240 transMapRefSeqV5,30 transMapRefSeqV5,240 transMapRnaV5,30 transMapRnaV5,240 transMapV5,29 transMapV5,79 transMapV5,115 transMapV5,346 species-specific augustusGene,156 specific est,197 gap,34 gold,36 intronEst,278 mrna,143 simpleRepeat,53 specification gap,60 gold,59 specify refSeqComposite,1114 speed refSeqComposite,1443 splice augustusGene,53 genscan,156 refSeqComposite,271 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 transMapEnsemblV5,176 transMapEstV5,17 transMapEstV5,145 transMapRefSeqV5,145 transMapRnaV5,145 transMapV5,251 splicing augustusGene,123 genscan,33 genscan,186 intronEst,34 intronEst,95 split chainNetRn6,587 chainRn6,584 netRn6,584 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,424 transMapEstV5,393 transMapRefSeqV5,393 transMapRnaV5,393 transMapV5,499 srprna rmsk,194 staff refSeqComposite,643 refSeqComposite,694 uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,757 transMapEstV5,726 transMapRefSeqV5,726 transMapRnaV5,726 transMapV5,832 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 est,563 intronEst,644 refSeqComposite,1559 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,125 uniprot,209 uniprot,1821 state chainNetRn6,931 chainNetRn6,1034 chainRn6,928 chainRn6,1031 netRn6,928 netRn6,1031 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 refSeqComposite,1563 transMapEnsemblV5,675 transMapEstV5,644 transMapRefSeqV5,644 transMapRnaV5,644 transMapV5,750 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,307 transMapEstV5,276 transMapRefSeqV5,276 transMapRnaV5,276 transMapV5,382 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 storage chainNetRn6,988 chainRn6,985 netRn6,985 stored refSeqComposite,1479 transMapEnsemblV5,544 transMapEstV5,513 transMapRefSeqV5,513 transMapRnaV5,513 transMapV5,619 uniprot,1733 strand chainNetRn6,255 chainRn6,252 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 est,77 intronEst,158 nestedRepeats,144 nestedRepeats,155 netRn6,252 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,120 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainNetRn6,298 chainRn6,295 netRn6,295 subcellular uniprot,553 subject refSeqComposite,678 refSeqComposite,703 submit refSeqComposite,118 submitted est,736 intronEst,820 mrna,453 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 submodel augustusGene,331 subsections chainNetRn6,652 chainRn6,649 netRn6,649 subsequent transMapEnsemblV5,442 transMapEstV5,411 transMapRefSeqV5,411 transMapRnaV5,411 transMapV5,517 subset est,136 intronEst,217 microsat,54 mrna,82 ncbiRefSeqCurated,7 ncbiRefSeqPredicted,7 refSeqComposite,212 refSeqComposite,342 refSeqComposite,515 refSeqComposite,520 refSeqComposite,551 refSeqComposite,553 refSeqComposite,583 refSeqComposite,795 transMapEnsemblV5,208 transMapEstV5,177 transMapRefSeqV5,177 transMapRnaV5,177 transMapV5,283 substantial chainNetRn6,173 chainRn6,170 netRn6,170 subtrack refSeqComposite,750 refSeqComposite,762 uniprot,411 subtracks chainNetRn6,33 chainNetRn6,40 chainRn6,30 chainRn6,37 netRn6,30 netRn6,37 refSeqComposite,35 refSeqComposite,163 refSeqComposite,187 refSeqComposite,1399 uniprot,59 uniprot,72 uniprot,520 uniprot,548 subtracts refSeqComposite,179 successful est,593 intronEst,674 such chainNetRn6,866 chainRn6,863 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netRn6,863 refSeqComposite,413 uniprot,306 suffix transMapEnsemblV5,401 transMapEstV5,370 transMapRefSeqV5,370 transMapRnaV5,370 transMapV5,476 uniprot,1255 suggestions refSeqComposite,117 suitable uniprot,1868 suppl augustusGene,336 supported gap,93 sure refSeqComposite,1100 uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainNetRn6,1048 chainRn6,1045 netRn6,1045 syn chainNetRn6,529 chainRn6,526 netRn6,526 transMapEnsemblV5,255 transMapEstV5,224 transMapRefSeqV5,224 transMapRnaV5,224 transMapV5,330 syntenic chainNetRn6,292 chainNetRn6,873 chainRn6,289 chainRn6,870 netRn6,289 netRn6,870 transMapEnsemblV5,237 transMapEnsemblV5,517 transMapEstV5,206 transMapEstV5,486 transMapRefSeqV5,206 transMapRefSeqV5,486 transMapRnaV5,206 transMapRnaV5,486 transMapV5,312 transMapV5,592 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,768 transMapEstV5,45 transMapEstV5,737 transMapRefSeqV5,45 transMapRefSeqV5,737 transMapRnaV5,45 transMapRnaV5,737 transMapV5,44 transMapV5,843 synteny chainNetRn6,36 chainRn6,33 netRn6,33 transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 synteny-filtered transMapV5,83 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainNetRn6,84 chainRn6,81 netRn6,81 refSeqComposite,1468 refSeqComposite,1527 transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1353 uniprot,1784 systems chainNetRn6,94 chainRn6,91 netRn6,91 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 refSeqComposite,1795 xenoRefGene,365 t-123-31-11491 chainNetRn6,685 chainRn6,682 netRn6,682 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 est,222 est,225 est,244 intronEst,303 intronEst,306 intronEst,325 mrna,168 mrna,171 mrna,190 refSeqComposite,1180 refSeqComposite,1313 refSeqComposite,1358 refSeqComposite,1575 transMapEnsemblV5,532 transMapEstV5,501 transMapRefSeqV5,501 transMapRnaV5,501 transMapV5,607 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 refSeqComposite,82 refSeqComposite,1319 refSeqComposite,1404 refSeqComposite,1433 uniprot,1301 tablesize chainNetRn6,715 chainRn6,712 netRn6,712 tags est,22 intronEst,23 tail est,504 intronEst,585 taken est,475 intronEst,556 refSeqComposite,25 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 targeted transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 targeting refSeqComposite,584 task est,164 intronEst,245 mrna,110 tatusova refSeqComposite,1794 xenoRefGene,364 tblastn uniprot,1476 techniques est,569 intronEst,650 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term est,171 intronEst,252 mrna,117 terminal rmsk,167 terminology refSeqComposite,1075 terms est,215 est,261 intronEst,296 intronEst,342 mrna,161 mrna,207 text est,178 est,218 est,258 intronEst,259 intronEst,299 intronEst,339 mrna,124 mrna,164 mrna,204 uniprot,1763 tgap chainNetRn6,743 chainRn6,740 netRn6,740 th transMapEnsemblV5,796 transMapEstV5,765 transMapRefSeqV5,765 transMapRnaV5,765 transMapV5,871 than chainNetRn6,89 chainNetRn6,518 chainRn6,86 chainRn6,515 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 est,283 est,576 intronEst,364 intronEst,657 mrna,229 nestedRepeats,213 nestedRepeats,271 netRn6,86 netRn6,515 refSeqComposite,1245 transMapEnsemblV5,225 transMapEnsemblV5,376 transMapEstV5,194 transMapEstV5,345 transMapRefSeqV5,194 transMapRefSeqV5,345 transMapRnaV5,194 transMapRnaV5,345 transMapV5,108 transMapV5,149 transMapV5,300 transMapV5,451 xenoRefGene,23 xenoRefGene,235 thank ensGene,150 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that chainNetRn6,24 chainNetRn6,49 chainNetRn6,85 chainNetRn6,146 chainNetRn6,171 chainNetRn6,377 chainNetRn6,404 chainNetRn6,426 chainNetRn6,578 chainNetRn6,836 chainNetRn6,847 chainRn6,21 chainRn6,46 chainRn6,82 chainRn6,143 chainRn6,168 chainRn6,374 chainRn6,401 chainRn6,423 chainRn6,575 chainRn6,833 chainRn6,844 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 est,39 est,66 est,120 est,227 est,251 est,299 est,314 est,331 est,355 est,373 est,390 est,405 est,659 est,680 genscan,141 gold,75 gold,145 intronEst,6 intronEst,30 intronEst,50 intronEst,201 intronEst,308 intronEst,332 intronEst,380 intronEst,395 intronEst,412 intronEst,436 intronEst,454 intronEst,471 intronEst,486 intronEst,740 intronEst,761 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,245 mrna,260 mrna,277 mrna,301 mrna,319 mrna,336 nestedRepeats,265 nestedRepeats,273 netRn6,21 netRn6,46 netRn6,82 netRn6,143 netRn6,168 netRn6,374 netRn6,401 netRn6,423 netRn6,575 netRn6,833 netRn6,844 refSeqComposite,151 refSeqComposite,171 refSeqComposite,216 refSeqComposite,346 refSeqComposite,389 refSeqComposite,824 refSeqComposite,934 refSeqComposite,1025 refSeqComposite,1033 refSeqComposite,1058 refSeqComposite,1101 refSeqComposite,1622 rmsk,42 rmsk,259 transMapEnsemblV5,118 transMapEnsemblV5,194 transMapEnsemblV5,500 transMapEstV5,87 transMapEstV5,163 transMapEstV5,469 transMapRefSeqV5,87 transMapRefSeqV5,163 transMapRefSeqV5,469 transMapRnaV5,87 transMapRnaV5,163 transMapRnaV5,469 transMapV5,193 transMapV5,269 transMapV5,575 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainNetRn6,22 chainNetRn6,41 chainNetRn6,63 chainNetRn6,76 chainNetRn6,124 chainNetRn6,137 chainNetRn6,154 chainNetRn6,161 chainNetRn6,208 chainNetRn6,212 chainNetRn6,238 chainNetRn6,248 chainNetRn6,253 chainNetRn6,261 chainNetRn6,269 chainNetRn6,273 chainNetRn6,283 chainNetRn6,301 chainNetRn6,310 chainNetRn6,325 chainNetRn6,340 chainNetRn6,346 chainNetRn6,349 chainNetRn6,364 chainNetRn6,370 chainNetRn6,374 chainNetRn6,394 chainNetRn6,400 chainNetRn6,414 chainNetRn6,432 chainNetRn6,449 chainNetRn6,452 chainNetRn6,457 chainNetRn6,470 chainNetRn6,483 chainNetRn6,485 chainNetRn6,492 chainNetRn6,495 chainNetRn6,502 chainNetRn6,508 chainNetRn6,521 chainNetRn6,532 chainNetRn6,536 chainNetRn6,539 chainNetRn6,547 chainNetRn6,551 chainNetRn6,557 chainNetRn6,568 chainNetRn6,571 chainNetRn6,583 chainNetRn6,591 chainNetRn6,593 chainNetRn6,601 chainNetRn6,607 chainNetRn6,616 chainNetRn6,619 chainNetRn6,650 chainNetRn6,655 chainNetRn6,664 chainNetRn6,668 chainNetRn6,675 chainNetRn6,698 chainNetRn6,706 chainNetRn6,776 chainNetRn6,780 chainNetRn6,788 chainNetRn6,792 chainNetRn6,796 chainNetRn6,804 chainNetRn6,849 chainNetRn6,859 chainNetRn6,878 chainNetRn6,881 chainNetRn6,893 chainNetRn6,917 chainNetRn6,959 chainNetRn6,965 chainNetRn6,983 chainNetRn6,990 chainNetRn6,1002 chainNetRn6,1011 chainNetRn6,1032 chainNetRn6,1072 chainRn6,19 chainRn6,38 chainRn6,60 chainRn6,73 chainRn6,121 chainRn6,134 chainRn6,151 chainRn6,158 chainRn6,205 chainRn6,209 chainRn6,235 chainRn6,245 chainRn6,250 chainRn6,258 chainRn6,266 chainRn6,270 chainRn6,280 chainRn6,298 chainRn6,307 chainRn6,322 chainRn6,337 chainRn6,343 chainRn6,346 chainRn6,361 chainRn6,367 chainRn6,371 chainRn6,391 chainRn6,397 chainRn6,411 chainRn6,429 chainRn6,446 chainRn6,449 chainRn6,454 chainRn6,467 chainRn6,480 chainRn6,482 chainRn6,489 chainRn6,492 chainRn6,499 chainRn6,505 chainRn6,518 chainRn6,529 chainRn6,533 chainRn6,536 chainRn6,544 chainRn6,548 chainRn6,554 chainRn6,565 chainRn6,568 chainRn6,580 chainRn6,588 chainRn6,590 chainRn6,598 chainRn6,604 chainRn6,613 chainRn6,616 chainRn6,647 chainRn6,652 chainRn6,661 chainRn6,665 chainRn6,672 chainRn6,695 chainRn6,703 chainRn6,773 chainRn6,777 chainRn6,785 chainRn6,789 chainRn6,793 chainRn6,801 chainRn6,846 chainRn6,856 chainRn6,875 chainRn6,878 chainRn6,890 chainRn6,914 chainRn6,956 chainRn6,962 chainRn6,980 chainRn6,987 chainRn6,999 chainRn6,1008 chainRn6,1029 chainRn6,1069 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,277 est,287 est,319 est,326 est,340 est,349 est,357 est,366 est,375 est,392 est,399 est,408 est,419 est,440 est,463 est,477 est,491 est,502 est,508 est,518 est,522 est,533 est,537 est,544 est,553 est,557 est,567 est,587 est,613 est,619 est,654 est,660 est,692 est,695 est,711 est,720 est,738 est,804 gap,11 gap,14 gap,27 gap,39 gap,42 gap,49 gap,54 gap,56 gap,62 gap,65 gap,78 gap,84 gap,90 gap,110 gap,114 gap,119 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,29 gold,41 gold,48 gold,53 gold,55 gold,61 gold,64 gold,73 gold,78 gold,87 gold,104 gold,109 gold,115 gold,129 gold,134 intronEst,28 intronEst,38 intronEst,73 intronEst,96 intronEst,101 intronEst,108 intronEst,125 intronEst,137 intronEst,157 intronEst,161 intronEst,164 intronEst,167 intronEst,170 intronEst,179 intronEst,184 intronEst,192 intronEst,207 intronEst,211 intronEst,221 intronEst,233 intronEst,243 intronEst,248 intronEst,258 intronEst,263 intronEst,270 intronEst,281 intronEst,284 intronEst,287 intronEst,292 intronEst,302 intronEst,305 intronEst,311 intronEst,321 intronEst,328 intronEst,337 intronEst,358 intronEst,368 intronEst,400 intronEst,407 intronEst,421 intronEst,430 intronEst,438 intronEst,447 intronEst,456 intronEst,473 intronEst,480 intronEst,489 intronEst,500 intronEst,521 intronEst,544 intronEst,558 intronEst,572 intronEst,583 intronEst,589 intronEst,599 intronEst,603 intronEst,614 intronEst,618 intronEst,625 intronEst,634 intronEst,638 intronEst,648 intronEst,668 intronEst,694 intronEst,700 intronEst,735 intronEst,741 intronEst,773 intronEst,776 intronEst,792 intronEst,801 intronEst,822 intronEst,888 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,223 mrna,233 mrna,265 mrna,272 mrna,286 mrna,295 mrna,303 mrna,312 mrna,321 mrna,338 mrna,345 mrna,356 mrna,379 mrna,394 mrna,397 mrna,408 mrna,411 mrna,427 mrna,436 mrna,442 mrna,455 mrna,521 ncbiRefSeqGenomicDiff,9 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netRn6,19 netRn6,38 netRn6,60 netRn6,73 netRn6,121 netRn6,134 netRn6,151 netRn6,158 netRn6,205 netRn6,209 netRn6,235 netRn6,245 netRn6,250 netRn6,258 netRn6,266 netRn6,270 netRn6,280 netRn6,298 netRn6,307 netRn6,322 netRn6,337 netRn6,343 netRn6,346 netRn6,361 netRn6,367 netRn6,371 netRn6,391 netRn6,397 netRn6,411 netRn6,429 netRn6,446 netRn6,449 netRn6,454 netRn6,467 netRn6,480 netRn6,482 netRn6,489 netRn6,492 netRn6,499 netRn6,505 netRn6,518 netRn6,529 netRn6,533 netRn6,536 netRn6,544 netRn6,548 netRn6,554 netRn6,565 netRn6,568 netRn6,580 netRn6,588 netRn6,590 netRn6,598 netRn6,604 netRn6,613 netRn6,616 netRn6,647 netRn6,652 netRn6,661 netRn6,665 netRn6,672 netRn6,695 netRn6,703 netRn6,773 netRn6,777 netRn6,785 netRn6,789 netRn6,793 netRn6,801 netRn6,846 netRn6,856 netRn6,875 netRn6,878 netRn6,890 netRn6,914 netRn6,956 netRn6,962 netRn6,980 netRn6,987 netRn6,999 netRn6,1008 netRn6,1029 netRn6,1069 refSeqComposite,12 refSeqComposite,27 refSeqComposite,43 refSeqComposite,52 refSeqComposite,56 refSeqComposite,66 refSeqComposite,90 refSeqComposite,98 refSeqComposite,133 refSeqComposite,165 refSeqComposite,169 refSeqComposite,185 refSeqComposite,240 refSeqComposite,281 refSeqComposite,284 refSeqComposite,290 refSeqComposite,307 refSeqComposite,313 refSeqComposite,325 refSeqComposite,333 refSeqComposite,369 refSeqComposite,373 refSeqComposite,386 refSeqComposite,393 refSeqComposite,398 refSeqComposite,402 refSeqComposite,441 refSeqComposite,447 refSeqComposite,451 refSeqComposite,463 refSeqComposite,497 refSeqComposite,507 refSeqComposite,529 refSeqComposite,560 refSeqComposite,571 refSeqComposite,579 refSeqComposite,587 refSeqComposite,599 refSeqComposite,606 refSeqComposite,610 refSeqComposite,614 refSeqComposite,635 refSeqComposite,648 refSeqComposite,658 refSeqComposite,671 refSeqComposite,682 refSeqComposite,696 refSeqComposite,711 refSeqComposite,716 refSeqComposite,732 refSeqComposite,736 refSeqComposite,739 refSeqComposite,745 refSeqComposite,752 refSeqComposite,757 refSeqComposite,761 refSeqComposite,774 refSeqComposite,780 refSeqComposite,788 refSeqComposite,800 refSeqComposite,811 refSeqComposite,839 refSeqComposite,844 refSeqComposite,859 refSeqComposite,868 refSeqComposite,879 refSeqComposite,884 refSeqComposite,888 refSeqComposite,907 refSeqComposite,913 refSeqComposite,921 refSeqComposite,927 refSeqComposite,977 refSeqComposite,1001 refSeqComposite,1005 refSeqComposite,1008 refSeqComposite,1012 refSeqComposite,1016 refSeqComposite,1051 refSeqComposite,1063 refSeqComposite,1110 refSeqComposite,1115 refSeqComposite,1121 refSeqComposite,1130 refSeqComposite,1144 refSeqComposite,1159 refSeqComposite,1176 refSeqComposite,1185 refSeqComposite,1190 refSeqComposite,1198 refSeqComposite,1212 refSeqComposite,1220 refSeqComposite,1233 refSeqComposite,1257 refSeqComposite,1260 refSeqComposite,1276 refSeqComposite,1285 refSeqComposite,1292 refSeqComposite,1310 refSeqComposite,1318 refSeqComposite,1339 refSeqComposite,1346 refSeqComposite,1367 refSeqComposite,1370 refSeqComposite,1387 refSeqComposite,1397 refSeqComposite,1426 refSeqComposite,1449 refSeqComposite,1465 refSeqComposite,1470 refSeqComposite,1473 refSeqComposite,1498 refSeqComposite,1516 refSeqComposite,1529 refSeqComposite,1547 refSeqComposite,1572 refSeqComposite,1577 refSeqComposite,1581 refSeqComposite,1593 refSeqComposite,1598 refSeqComposite,1602 refSeqComposite,1606 refSeqComposite,1612 refSeqComposite,1644 refSeqComposite,1649 refSeqComposite,1652 refSeqComposite,1659 refSeqComposite,1669 refSeqComposite,1698 refSeqComposite,1727 refSeqComposite,1735 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,99 transMapEnsemblV5,120 transMapEnsemblV5,127 transMapEnsemblV5,162 transMapEnsemblV5,179 transMapEnsemblV5,202 transMapEnsemblV5,210 transMapEnsemblV5,253 transMapEnsemblV5,257 transMapEnsemblV5,261 transMapEnsemblV5,273 transMapEnsemblV5,279 transMapEnsemblV5,296 transMapEnsemblV5,304 transMapEnsemblV5,311 transMapEnsemblV5,313 transMapEnsemblV5,324 transMapEnsemblV5,329 transMapEnsemblV5,333 transMapEnsemblV5,342 transMapEnsemblV5,346 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,406 transMapEnsemblV5,416 transMapEnsemblV5,419 transMapEnsemblV5,441 transMapEnsemblV5,450 transMapEnsemblV5,463 transMapEnsemblV5,473 transMapEnsemblV5,485 transMapEnsemblV5,506 transMapEnsemblV5,520 transMapEnsemblV5,531 transMapEnsemblV5,535 transMapEnsemblV5,541 transMapEnsemblV5,580 transMapEnsemblV5,588 transMapEnsemblV5,606 transMapEnsemblV5,622 transMapEnsemblV5,645 transMapEnsemblV5,694 transMapEnsemblV5,706 transMapEnsemblV5,808 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,68 transMapEstV5,89 transMapEstV5,96 transMapEstV5,131 transMapEstV5,148 transMapEstV5,171 transMapEstV5,179 transMapEstV5,222 transMapEstV5,226 transMapEstV5,230 transMapEstV5,242 transMapEstV5,248 transMapEstV5,265 transMapEstV5,273 transMapEstV5,280 transMapEstV5,282 transMapEstV5,293 transMapEstV5,298 transMapEstV5,302 transMapEstV5,311 transMapEstV5,315 transMapEstV5,317 transMapEstV5,348 transMapEstV5,375 transMapEstV5,385 transMapEstV5,388 transMapEstV5,410 transMapEstV5,419 transMapEstV5,432 transMapEstV5,442 transMapEstV5,454 transMapEstV5,475 transMapEstV5,489 transMapEstV5,500 transMapEstV5,504 transMapEstV5,510 transMapEstV5,549 transMapEstV5,557 transMapEstV5,575 transMapEstV5,591 transMapEstV5,614 transMapEstV5,663 transMapEstV5,675 transMapEstV5,777 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,68 transMapRefSeqV5,89 transMapRefSeqV5,96 transMapRefSeqV5,131 transMapRefSeqV5,148 transMapRefSeqV5,171 transMapRefSeqV5,179 transMapRefSeqV5,222 transMapRefSeqV5,226 transMapRefSeqV5,230 transMapRefSeqV5,242 transMapRefSeqV5,248 transMapRefSeqV5,265 transMapRefSeqV5,273 transMapRefSeqV5,280 transMapRefSeqV5,282 transMapRefSeqV5,293 transMapRefSeqV5,298 transMapRefSeqV5,302 transMapRefSeqV5,311 transMapRefSeqV5,315 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,375 transMapRefSeqV5,385 transMapRefSeqV5,388 transMapRefSeqV5,410 transMapRefSeqV5,419 transMapRefSeqV5,432 transMapRefSeqV5,442 transMapRefSeqV5,454 transMapRefSeqV5,475 transMapRefSeqV5,489 transMapRefSeqV5,500 transMapRefSeqV5,504 transMapRefSeqV5,510 transMapRefSeqV5,549 transMapRefSeqV5,557 transMapRefSeqV5,575 transMapRefSeqV5,591 transMapRefSeqV5,614 transMapRefSeqV5,663 transMapRefSeqV5,675 transMapRefSeqV5,777 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,68 transMapRnaV5,89 transMapRnaV5,96 transMapRnaV5,131 transMapRnaV5,148 transMapRnaV5,171 transMapRnaV5,179 transMapRnaV5,222 transMapRnaV5,226 transMapRnaV5,230 transMapRnaV5,242 transMapRnaV5,248 transMapRnaV5,265 transMapRnaV5,273 transMapRnaV5,280 transMapRnaV5,282 transMapRnaV5,293 transMapRnaV5,298 transMapRnaV5,302 transMapRnaV5,311 transMapRnaV5,315 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,375 transMapRnaV5,385 transMapRnaV5,388 transMapRnaV5,410 transMapRnaV5,419 transMapRnaV5,432 transMapRnaV5,442 transMapRnaV5,454 transMapRnaV5,475 transMapRnaV5,489 transMapRnaV5,500 transMapRnaV5,504 transMapRnaV5,510 transMapRnaV5,549 transMapRnaV5,557 transMapRnaV5,575 transMapRnaV5,591 transMapRnaV5,614 transMapRnaV5,663 transMapRnaV5,675 transMapRnaV5,777 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,92 transMapV5,99 transMapV5,104 transMapV5,122 transMapV5,127 transMapV5,133 transMapV5,137 transMapV5,174 transMapV5,195 transMapV5,202 transMapV5,237 transMapV5,254 transMapV5,277 transMapV5,285 transMapV5,328 transMapV5,332 transMapV5,336 transMapV5,348 transMapV5,354 transMapV5,371 transMapV5,379 transMapV5,386 transMapV5,388 transMapV5,399 transMapV5,404 transMapV5,408 transMapV5,417 transMapV5,421 transMapV5,423 transMapV5,454 transMapV5,481 transMapV5,491 transMapV5,494 transMapV5,516 transMapV5,525 transMapV5,538 transMapV5,548 transMapV5,560 transMapV5,581 transMapV5,595 transMapV5,606 transMapV5,610 transMapV5,616 transMapV5,655 transMapV5,663 transMapV5,681 transMapV5,697 transMapV5,720 transMapV5,769 transMapV5,781 transMapV5,883 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 ucscToRefSeq,21 ucscToRefSeq,27 ucscToRefSeq,32 ucscToRefSeq,37 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainNetRn6,811 chainRn6,808 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netRn6,808 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainNetRn6,661 chainNetRn6,800 chainNetRn6,885 chainRn6,658 chainRn6,797 chainRn6,882 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netRn6,658 netRn6,797 netRn6,882 transMapV5,130 uniprot,1083 uniprot,1516 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 est,622 intronEst,703 transMapEnsemblV5,453 transMapEstV5,422 transMapRefSeqV5,422 transMapRnaV5,422 transMapV5,528 uniprot,705 uniprot,1092 therefore gold,123 refSeqComposite,1635 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainNetRn6,56 chainNetRn6,107 chainNetRn6,419 chainNetRn6,673 chainRn6,53 chainRn6,104 chainRn6,416 chainRn6,670 ensGene,10 ensGene,154 est,590 intronEst,671 microsat,24 nestedRepeats,262 nestedRepeats,266 netRn6,53 netRn6,104 netRn6,416 netRn6,670 refSeqComposite,322 refSeqComposite,332 refSeqComposite,797 refSeqComposite,1296 refSeqComposite,1432 rmsk,235 simpleRepeat,33 transMapEnsemblV5,460 transMapEnsemblV5,469 transMapEnsemblV5,524 transMapEnsemblV5,585 transMapEstV5,429 transMapEstV5,438 transMapEstV5,493 transMapEstV5,554 transMapRefSeqV5,429 transMapRefSeqV5,438 transMapRefSeqV5,493 transMapRefSeqV5,554 transMapRnaV5,429 transMapRnaV5,438 transMapRnaV5,493 transMapRnaV5,554 transMapV5,12 transMapV5,535 transMapV5,544 transMapV5,599 transMapV5,660 uniprot,99 uniprot,130 uniprot,1160 thesis chainNetRn6,1031 chainRn6,1028 netRn6,1028 they chainNetRn6,336 chainRn6,333 netRn6,333 refSeqComposite,248 refSeqComposite,292 refSeqComposite,357 refSeqComposite,419 uniprot,179 thibaud-nissen refSeqComposite,1756 xenoRefGene,326 thick chainNetRn6,47 chainRn6,44 netRn6,44 refSeqComposite,997 refSeqComposite,1013 thin refSeqComposite,995 refSeqComposite,1002 this augustusGene,13 augustusGene,106 augustusGene,224 chainNetRn6,17 chainNetRn6,178 chainNetRn6,306 chainNetRn6,406 chainNetRn6,704 chainNetRn6,826 chainRn6,14 chainRn6,175 chainRn6,303 chainRn6,403 chainRn6,701 chainRn6,823 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 est,13 est,50 est,115 est,142 est,378 est,415 est,595 est,631 est,644 est,726 gap,8 gap,37 gap,45 gap,75 gap,116 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,39 gold,44 gold,70 gold,140 intronEst,14 intronEst,134 intronEst,196 intronEst,223 intronEst,459 intronEst,496 intronEst,676 intronEst,712 intronEst,725 intronEst,807 intronEst,810 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,324 mrna,352 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netRn6,14 netRn6,175 netRn6,303 netRn6,403 netRn6,701 netRn6,823 refSeqComposite,58 refSeqComposite,145 refSeqComposite,501 refSeqComposite,565 refSeqComposite,726 refSeqComposite,816 refSeqComposite,855 refSeqComposite,1390 refSeqComposite,1438 refSeqComposite,1626 refSeqComposite,1712 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,134 transMapEnsemblV5,288 transMapEnsemblV5,677 transMapEstV5,13 transMapEstV5,65 transMapEstV5,75 transMapEstV5,103 transMapEstV5,257 transMapEstV5,646 transMapRefSeqV5,14 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,103 transMapRefSeqV5,257 transMapRefSeqV5,646 transMapRnaV5,14 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,103 transMapRnaV5,257 transMapRnaV5,646 transMapV5,171 transMapV5,181 transMapV5,209 transMapV5,363 transMapV5,752 ucscToINSDC,14 ucscToINSDC,46 ucscToRefSeq,9 ucscToRefSeq,40 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,371 est,404 intronEst,452 intronEst,485 microsat,62 mrna,317 nestedRepeats,272 refSeqComposite,219 refSeqComposite,348 refSeqComposite,1239 uniprot,729 xenoRefGene,229 thousands chainNetRn6,259 chainRn6,256 netRn6,256 three uniprot,1227 three-step uniprot,989 through gap,109 nestedRepeats,97 refSeqComposite,731 refSeqComposite,1325 refSeqComposite,1363 rmsk,309 transMapEnsemblV5,530 transMapEstV5,499 transMapRefSeqV5,499 transMapRnaV5,499 transMapV5,605 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time chainNetRn6,809 chainRn6,806 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netRn6,806 tissue est,207 est,242 est,257 intronEst,288 intronEst,323 intronEst,338 mrna,153 mrna,188 mrna,203 tissues est,250 intronEst,331 mrna,196 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainNetRn6,27 chainNetRn6,75 chainNetRn6,150 chainNetRn6,220 chainNetRn6,232 chainNetRn6,327 chainNetRn6,338 chainNetRn6,343 chainNetRn6,355 chainNetRn6,361 chainNetRn6,384 chainNetRn6,465 chainNetRn6,479 chainNetRn6,563 chainNetRn6,666 chainNetRn6,802 chainNetRn6,814 chainNetRn6,854 chainNetRn6,877 chainNetRn6,887 chainRn6,24 chainRn6,72 chainRn6,147 chainRn6,217 chainRn6,229 chainRn6,324 chainRn6,335 chainRn6,340 chainRn6,352 chainRn6,358 chainRn6,381 chainRn6,462 chainRn6,476 chainRn6,560 chainRn6,663 chainRn6,799 chainRn6,811 chainRn6,851 chainRn6,874 chainRn6,884 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,335 est,384 est,394 est,418 est,439 est,448 est,517 est,582 est,642 est,737 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,132 intronEst,57 intronEst,178 intronEst,205 intronEst,242 intronEst,246 intronEst,261 intronEst,268 intronEst,272 intronEst,290 intronEst,310 intronEst,317 intronEst,416 intronEst,465 intronEst,475 intronEst,499 intronEst,520 intronEst,529 intronEst,598 intronEst,663 intronEst,723 intronEst,821 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,281 mrna,330 mrna,340 mrna,355 mrna,378 mrna,454 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netRn6,24 netRn6,72 netRn6,147 netRn6,217 netRn6,229 netRn6,324 netRn6,335 netRn6,340 netRn6,352 netRn6,358 netRn6,381 netRn6,462 netRn6,476 netRn6,560 netRn6,663 netRn6,799 netRn6,811 netRn6,851 netRn6,874 netRn6,884 refSeqComposite,55 refSeqComposite,115 refSeqComposite,156 refSeqComposite,168 refSeqComposite,174 refSeqComposite,306 refSeqComposite,309 refSeqComposite,324 refSeqComposite,368 refSeqComposite,440 refSeqComposite,496 refSeqComposite,679 refSeqComposite,704 refSeqComposite,743 refSeqComposite,756 refSeqComposite,778 refSeqComposite,827 refSeqComposite,834 refSeqComposite,858 refSeqComposite,905 refSeqComposite,911 refSeqComposite,919 refSeqComposite,925 refSeqComposite,938 refSeqComposite,980 refSeqComposite,1029 refSeqComposite,1062 refSeqComposite,1098 refSeqComposite,1109 refSeqComposite,1175 refSeqComposite,1442 refSeqComposite,1536 refSeqComposite,1589 refSeqComposite,1688 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,112 transMapEnsemblV5,122 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,260 transMapEnsemblV5,293 transMapEnsemblV5,301 transMapEnsemblV5,318 transMapEnsemblV5,332 transMapEnsemblV5,345 transMapEnsemblV5,384 transMapEnsemblV5,429 transMapEnsemblV5,439 transMapEnsemblV5,472 transMapEnsemblV5,478 transMapEnsemblV5,491 transMapEnsemblV5,651 transMapEnsemblV5,693 transMapEnsemblV5,772 transMapEstV5,81 transMapEstV5,91 transMapEstV5,147 transMapEstV5,170 transMapEstV5,229 transMapEstV5,262 transMapEstV5,270 transMapEstV5,287 transMapEstV5,301 transMapEstV5,314 transMapEstV5,353 transMapEstV5,398 transMapEstV5,408 transMapEstV5,441 transMapEstV5,447 transMapEstV5,460 transMapEstV5,620 transMapEstV5,662 transMapEstV5,741 transMapRefSeqV5,81 transMapRefSeqV5,91 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,229 transMapRefSeqV5,262 transMapRefSeqV5,270 transMapRefSeqV5,287 transMapRefSeqV5,301 transMapRefSeqV5,314 transMapRefSeqV5,353 transMapRefSeqV5,398 transMapRefSeqV5,408 transMapRefSeqV5,441 transMapRefSeqV5,447 transMapRefSeqV5,460 transMapRefSeqV5,620 transMapRefSeqV5,662 transMapRefSeqV5,741 transMapRnaV5,81 transMapRnaV5,91 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,229 transMapRnaV5,262 transMapRnaV5,270 transMapRnaV5,287 transMapRnaV5,301 transMapRnaV5,314 transMapRnaV5,353 transMapRnaV5,398 transMapRnaV5,408 transMapRnaV5,441 transMapRnaV5,447 transMapRnaV5,460 transMapRnaV5,620 transMapRnaV5,662 transMapRnaV5,741 transMapV5,80 transMapV5,90 transMapV5,121 transMapV5,132 transMapV5,155 transMapV5,187 transMapV5,197 transMapV5,253 transMapV5,276 transMapV5,335 transMapV5,368 transMapV5,376 transMapV5,393 transMapV5,407 transMapV5,420 transMapV5,459 transMapV5,504 transMapV5,514 transMapV5,547 transMapV5,553 transMapV5,566 transMapV5,726 transMapV5,768 transMapV5,847 ucscToINSDC,22 ucscToRefSeq,17 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together chainNetRn6,130 chainRn6,127 netRn6,127 tolerate chainNetRn6,98 chainRn6,95 netRn6,95 tolerated uniprot,1257 too refSeqComposite,936 tool est,807 intronEst,891 mrna,524 refSeqComposite,1509 refSeqComposite,1738 transMapEnsemblV5,615 transMapEnsemblV5,646 transMapEstV5,584 transMapEstV5,615 transMapRefSeqV5,584 transMapRefSeqV5,615 transMapRnaV5,584 transMapRnaV5,615 transMapV5,690 transMapV5,721 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainNetRn6,520 chainRn6,517 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netRn6,517 refSeqComposite,737 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level chainNetRn6,395 chainNetRn6,415 chainRn6,392 chainRn6,412 netRn6,392 netRn6,412 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainNetRn6,18 chainNetRn6,62 chainNetRn6,65 chainNetRn6,126 chainNetRn6,268 chainNetRn6,271 chainNetRn6,322 chainNetRn6,357 chainNetRn6,389 chainNetRn6,576 chainNetRn6,705 chainNetRn6,768 chainRn6,15 chainRn6,59 chainRn6,62 chainRn6,123 chainRn6,265 chainRn6,268 chainRn6,319 chainRn6,354 chainRn6,386 chainRn6,573 chainRn6,702 chainRn6,765 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 est,14 est,51 est,116 est,141 est,153 est,379 est,645 est,727 gap,9 gap,76 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,71 gold,141 intronEst,15 intronEst,129 intronEst,135 intronEst,197 intronEst,222 intronEst,234 intronEst,460 intronEst,726 intronEst,808 intronEst,811 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,325 mrna,444 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netRn6,15 netRn6,59 netRn6,62 netRn6,123 netRn6,265 netRn6,268 netRn6,319 netRn6,354 netRn6,386 netRn6,573 netRn6,702 netRn6,765 refSeqComposite,17 refSeqComposite,46 refSeqComposite,146 refSeqComposite,150 refSeqComposite,312 refSeqComposite,316 refSeqComposite,329 refSeqComposite,336 refSeqComposite,473 refSeqComposite,502 refSeqComposite,512 refSeqComposite,566 refSeqComposite,727 refSeqComposite,740 refSeqComposite,758 refSeqComposite,817 refSeqComposite,846 refSeqComposite,871 refSeqComposite,1201 refSeqComposite,1216 refSeqComposite,1341 refSeqComposite,1713 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,97 transMapEnsemblV5,107 transMapEnsemblV5,233 transMapEnsemblV5,572 transMapEnsemblV5,576 transMapEnsemblV5,678 transMapEstV5,14 transMapEstV5,66 transMapEstV5,76 transMapEstV5,202 transMapEstV5,541 transMapEstV5,545 transMapEstV5,647 transMapRefSeqV5,15 transMapRefSeqV5,66 transMapRefSeqV5,76 transMapRefSeqV5,202 transMapRefSeqV5,541 transMapRefSeqV5,545 transMapRefSeqV5,647 transMapRnaV5,15 transMapRnaV5,66 transMapRnaV5,76 transMapRnaV5,202 transMapRnaV5,541 transMapRnaV5,545 transMapRnaV5,647 transMapV5,102 transMapV5,172 transMapV5,182 transMapV5,308 transMapV5,647 transMapV5,651 transMapV5,753 ucscToINSDC,15 ucscToINSDC,47 ucscToRefSeq,10 ucscToRefSeq,41 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 chainNetRn6,782 chainRn6,779 ensGene,24 est,59 est,424 genscan,56 genscan,74 intronEst,143 intronEst,505 mrna,40 mrna,363 netRn6,779 refSeqComposite,100 refSeqComposite,136 refSeqComposite,170 refSeqComposite,405 refSeqComposite,456 refSeqComposite,597 refSeqComposite,605 refSeqComposite,1141 refSeqComposite,1151 refSeqComposite,1227 refSeqComposite,1297 refSeqComposite,1376 refSeqComposite,1477 refSeqComposite,1584 refSeqComposite,1677 refSeqComposite,1702 transMapEnsemblV5,105 transMapEnsemblV5,525 transMapEnsemblV5,586 transMapEstV5,74 transMapEstV5,494 transMapEstV5,555 transMapRefSeqV5,74 transMapRefSeqV5,494 transMapRefSeqV5,555 transMapRnaV5,74 transMapRnaV5,494 transMapRnaV5,555 transMapV5,13 transMapV5,180 transMapV5,600 transMapV5,661 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,56 traditional chainNetRn6,90 chainRn6,87 netRn6,87 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,459 intronEst,55 intronEst,540 refSeqComposite,431 transcript est,554 intronEst,635 refSeqComposite,536 refSeqComposite,886 refSeqComposite,914 refSeqComposite,922 refSeqComposite,993 refSeqComposite,1036 refSeqComposite,1057 refSeqComposite,1122 refSeqComposite,1132 transMapEnsemblV5,154 transMapEnsemblV5,326 transMapEnsemblV5,380 transMapEstV5,123 transMapEstV5,295 transMapEstV5,349 transMapRefSeqV5,123 transMapRefSeqV5,295 transMapRefSeqV5,349 transMapRnaV5,123 transMapRnaV5,295 transMapRnaV5,349 transMapV5,229 transMapV5,401 transMapV5,455 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,510 intronEst,591 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 est,101 est,493 est,540 est,562 intronEst,182 intronEst,574 intronEst,621 intronEst,643 transcriptional genscan,28 transcripts augustusGene,124 ncbiRefSeqGenomicDiff,7 refSeqComposite,256 refSeqComposite,323 refSeqComposite,472 refSeqComposite,524 refSeqComposite,557 refSeqComposite,1809 transMapEnsemblV5,344 transMapEstV5,313 transMapRefSeqV5,313 transMapRnaV5,313 transMapV5,419 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 translated transMapV5,156 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,443 transMapEnsemblV5,502 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,600 transMapEnsemblV5,666 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,412 transMapEstV5,471 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,569 transMapEstV5,635 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,412 transMapRefSeqV5,471 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,569 transMapRefSeqV5,635 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,412 transMapRnaV5,471 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,569 transMapRnaV5,635 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,71 transMapV5,101 transMapV5,158 transMapV5,518 transMapV5,577 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,675 transMapV5,741 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainNetRn6,577 chainNetRn6,602 chainNetRn6,912 chainRn6,574 chainRn6,599 chainRn6,909 netRn6,574 netRn6,599 netRn6,909 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainNetRn6,810 chainRn6,807 netRn6,807 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainNetRn6,344 chainRn6,341 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netRn6,341 refSeqComposite,809 xenoRefGene,133 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainNetRn6,918 chainRn6,915 netRn6,915 transMapEnsemblV5,455 transMapEnsemblV5,492 transMapEstV5,424 transMapEstV5,461 transMapRefSeqV5,424 transMapRefSeqV5,461 transMapRnaV5,424 transMapRnaV5,461 transMapV5,530 transMapV5,567 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type est,169 est,199 gold,146 intronEst,250 intronEst,280 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainNetRn6,516 chainRn6,513 est,248 est,427 gap,122 gold,137 intronEst,329 intronEst,508 mrna,194 mrna,366 netRn6,513 refSeqComposite,875 refSeqComposite,890 transMapEnsemblV5,139 transMapEstV5,108 transMapRefSeqV5,108 transMapRnaV5,108 transMapV5,214 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 refSeqComposite,430 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 est,33 est,462 gc5BaseBw,33 intronEst,44 intronEst,543 u chainNetRn6,1081 chainRn6,1078 netRn6,1078 ucsc est,731 intronEst,815 mrna,448 nestedRepeats,245 refSeqComposite,44 refSeqComposite,48 refSeqComposite,71 refSeqComposite,193 refSeqComposite,334 refSeqComposite,480 refSeqComposite,486 refSeqComposite,595 refSeqComposite,1155 refSeqComposite,1205 refSeqComposite,1213 refSeqComposite,1418 refSeqComposite,1603 refSeqComposite,1717 transMapEnsemblV5,35 transMapEnsemblV5,163 transMapEnsemblV5,184 transMapEnsemblV5,685 transMapEstV5,33 transMapEstV5,132 transMapEstV5,153 transMapEstV5,654 transMapRefSeqV5,33 transMapRefSeqV5,132 transMapRefSeqV5,153 transMapRefSeqV5,654 transMapRnaV5,33 transMapRnaV5,132 transMapRnaV5,153 transMapRnaV5,654 transMapV5,32 transMapV5,238 transMapV5,259 transMapV5,760 ucscToINSDC,17 ucscToRefSeq,12 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,286 unambiguously refSeqComposite,1112 uncheck refSeqComposite,164 undergone refSeqComposite,618 xenoRefGene,69 underlies genscan,142 underlying uniprot,1682 xenoRefGene,37 underneath chainNetRn6,846 chainRn6,843 netRn6,843 unexpected uniprot,766 ungapped chainNetRn6,455 chainRn6,452 netRn6,452 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,386 transMapEnsemblV5,397 transMapEnsemblV5,434 transMapEnsemblV5,445 transMapEstV5,355 transMapEstV5,366 transMapEstV5,403 transMapEstV5,414 transMapRefSeqV5,355 transMapRefSeqV5,366 transMapRefSeqV5,403 transMapRefSeqV5,414 transMapRnaV5,355 transMapRnaV5,366 transMapRnaV5,403 transMapRnaV5,414 transMapV5,461 transMapV5,472 transMapV5,509 transMapV5,520 uniprot,1600 universal uniprot,1993 university chainNetRn6,932 chainNetRn6,966 chainNetRn6,1012 chainNetRn6,1035 chainRn6,929 chainRn6,963 chainRn6,1009 chainRn6,1032 netRn6,929 netRn6,963 netRn6,1009 netRn6,1032 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainNetRn6,235 chainRn6,232 est,605 intronEst,686 netRn6,232 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainNetRn6,192 chainRn6,189 netRn6,189 unspliced est,8 est,634 intronEst,123 intronEst,715 unsure rmsk,263 untranscribed refSeqComposite,408 up gold,77 refSeqComposite,1444 refSeqComposite,1638 rmsk,146 update est,786 intronEst,870 mrna,503 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refSeqComposite,1774 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 us uniprot,687 uniprot,1441 use est,166 gold,88 intronEst,247 mrna,112 refSeqComposite,36 refSeqComposite,1546 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainNetRn6,304 chainNetRn6,679 chainNetRn6,710 chainNetRn6,801 chainNetRn6,853 chainNetRn6,886 chainRn6,301 chainRn6,676 chainRn6,707 chainRn6,798 chainRn6,850 chainRn6,883 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 est,123 est,275 est,334 est,573 genscan,159 gold,14 intronEst,204 intronEst,356 intronEst,415 intronEst,654 mrna,69 mrna,221 mrna,280 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netRn6,301 netRn6,676 netRn6,707 netRn6,798 netRn6,850 netRn6,883 refSeqComposite,234 refSeqComposite,244 refSeqComposite,1000 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,187 transMapEnsemblV5,240 transMapEnsemblV5,245 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,317 transMapEnsemblV5,650 transMapEstV5,156 transMapEstV5,209 transMapEstV5,214 transMapEstV5,234 transMapEstV5,254 transMapEstV5,286 transMapEstV5,619 transMapRefSeqV5,156 transMapRefSeqV5,209 transMapRefSeqV5,214 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,286 transMapRefSeqV5,619 transMapRnaV5,156 transMapRnaV5,209 transMapRnaV5,214 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,286 transMapRnaV5,619 transMapV5,70 transMapV5,262 transMapV5,315 transMapV5,320 transMapV5,340 transMapV5,360 transMapV5,392 transMapV5,725 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainNetRn6,289 chainNetRn6,489 chainRn6,286 chainRn6,486 microsat,20 netRn6,286 netRn6,486 user est,393 intronEst,474 mrna,339 transMapEnsemblV5,121 transMapEstV5,90 transMapRefSeqV5,90 transMapRnaV5,90 transMapV5,196 users refSeqComposite,826 uniprot,406 uniprot,684 xenoRefGene,150 uses rmsk,79 using augustusGene,294 chainNetRn6,80 chainNetRn6,615 chainNetRn6,775 chainRn6,77 chainRn6,612 chainRn6,772 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 est,656 intronEst,737 microsat,90 mrna,396 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netRn6,77 netRn6,612 netRn6,772 refSeqComposite,79 refSeqComposite,1156 refSeqComposite,1206 refSeqComposite,1219 refSeqComposite,1237 refSeqComposite,1309 refSeqComposite,1507 refSeqComposite,1592 refSeqComposite,1623 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,564 transMapEnsemblV5,613 transMapEnsemblV5,765 transMapEstV5,44 transMapEstV5,533 transMapEstV5,582 transMapEstV5,734 transMapRefSeqV5,44 transMapRefSeqV5,533 transMapRefSeqV5,582 transMapRefSeqV5,734 transMapRnaV5,44 transMapRnaV5,533 transMapRnaV5,582 transMapRnaV5,734 transMapV5,43 transMapV5,82 transMapV5,125 transMapV5,136 transMapV5,143 transMapV5,639 transMapV5,688 transMapV5,840 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,227 ustat windowmaskerSdust,66 usually est,40 intronEst,51 nestedRepeats,192 transMapEnsemblV5,505 transMapEstV5,474 transMapRefSeqV5,474 transMapRnaV5,474 transMapV5,580 utilities refSeqComposite,1530 refSeqComposite,1599 utility refSeqComposite,1595 refSeqComposite,1607 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,165 v ensGene,185 v3.1 augustusGene,7 v4 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 v5 transMapV5,2 transMapV5,742 valid est,214 intronEst,295 mrna,160 validate refSeqComposite,829 xenoRefGene,153 validation genscan,107 value est,285 intronEst,366 mrna,231 variant uniprot,2026 variants refSeqComposite,951 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 refSeqComposite,1078 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainNetRn6,1039 chainRn6,1036 netRn6,1036 vector est,470 intronEst,551 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 refSeqComposite,1135 refSeqComposite,1570 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 refSeqComposite,1342 refSeqComposite,1696 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,159 transMapEnsemblV5,192 transMapEstV5,29 transMapEstV5,128 transMapEstV5,161 transMapRefSeqV5,29 transMapRefSeqV5,128 transMapRefSeqV5,161 transMapRnaV5,29 transMapRnaV5,128 transMapRnaV5,161 transMapV5,28 transMapV5,114 transMapV5,234 transMapV5,267 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very est,677 intronEst,758 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,328 transMapEstV5,297 transMapRefSeqV5,297 transMapRnaV5,297 transMapV5,403 uniprot,1293 view chainNetRn6,466 chainRn6,463 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 est,210 intronEst,291 mrna,156 netRn6,463 viewed est,638 gold,80 intronEst,719 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refSeqComposite,104 w chainNetRn6,1041 chainNetRn6,1061 chainNetRn6,1109 chainRn6,1038 chainRn6,1058 chainRn6,1106 gold,149 netRn6,1038 netRn6,1058 netRn6,1106 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainNetRn6,660 chainNetRn6,678 chainNetRn6,799 chainNetRn6,844 chainNetRn6,852 chainNetRn6,872 chainNetRn6,884 chainNetRn6,909 chainNetRn6,927 chainNetRn6,962 chainRn6,657 chainRn6,675 chainRn6,796 chainRn6,841 chainRn6,849 chainRn6,869 chainRn6,881 chainRn6,906 chainRn6,924 chainRn6,959 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 est,699 est,728 intronEst,780 intronEst,812 microsat,108 mrna,415 mrna,445 netRn6,657 netRn6,675 netRn6,796 netRn6,841 netRn6,849 netRn6,869 netRn6,881 netRn6,906 netRn6,924 netRn6,959 refSeqComposite,503 refSeqComposite,1264 refSeqComposite,1714 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,222 transMapEnsemblV5,239 transMapEnsemblV5,284 transMapEnsemblV5,316 transMapEnsemblV5,679 transMapEstV5,191 transMapEstV5,208 transMapEstV5,253 transMapEstV5,285 transMapEstV5,648 transMapRefSeqV5,191 transMapRefSeqV5,208 transMapRefSeqV5,253 transMapRefSeqV5,285 transMapRefSeqV5,648 transMapRnaV5,191 transMapRnaV5,208 transMapRnaV5,253 transMapRnaV5,285 transMapRnaV5,648 transMapV5,297 transMapV5,314 transMapV5,359 transMapV5,391 transMapV5,754 ucscToINSDC,48 ucscToRefSeq,42 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,254 xenoRefGene,283 way transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 transMapV5,665 uniprot,1459 ways gc5BaseBw,47 refSeqComposite,1303 we ensGene,146 refSeqComposite,77 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 webb chainNetRn6,941 chainNetRn6,978 chainRn6,938 chainRn6,975 netRn6,938 netRn6,975 weekly xenoRefGene,42 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 est,542 est,565 genscan,36 intronEst,623 intronEst,646 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainNetRn6,588 chainNetRn6,596 chainNetRn6,603 chainNetRn6,610 chainNetRn6,622 chainNetRn6,696 chainNetRn6,770 chainNetRn6,950 chainNetRn6,994 chainNetRn6,1008 chainRn6,585 chainRn6,593 chainRn6,600 chainRn6,607 chainRn6,619 chainRn6,693 chainRn6,767 chainRn6,947 chainRn6,991 chainRn6,1005 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 est,592 est,651 est,723 gc5BaseBw,79 intronEst,673 intronEst,732 mrna,391 mrna,439 netRn6,585 netRn6,593 netRn6,600 netRn6,607 netRn6,619 netRn6,693 netRn6,767 netRn6,947 netRn6,991 netRn6,1005 refSeqComposite,101 refSeqComposite,249 refSeqComposite,358 refSeqComposite,420 refSeqComposite,1152 refSeqComposite,1165 refSeqComposite,1230 refSeqComposite,1247 refSeqComposite,1288 transMapEnsemblV5,156 transMapEnsemblV5,186 transMapEnsemblV5,213 transMapEnsemblV5,244 transMapEnsemblV5,250 transMapEnsemblV5,264 transMapEnsemblV5,351 transMapEnsemblV5,382 transMapEnsemblV5,395 transMapEstV5,125 transMapEstV5,155 transMapEstV5,182 transMapEstV5,213 transMapEstV5,219 transMapEstV5,233 transMapEstV5,320 transMapEstV5,351 transMapEstV5,364 transMapRefSeqV5,125 transMapRefSeqV5,155 transMapRefSeqV5,182 transMapRefSeqV5,213 transMapRefSeqV5,219 transMapRefSeqV5,233 transMapRefSeqV5,320 transMapRefSeqV5,351 transMapRefSeqV5,364 transMapRnaV5,125 transMapRnaV5,155 transMapRnaV5,182 transMapRnaV5,213 transMapRnaV5,219 transMapRnaV5,233 transMapRnaV5,320 transMapRnaV5,351 transMapRnaV5,364 transMapV5,116 transMapV5,129 transMapV5,231 transMapV5,261 transMapV5,288 transMapV5,319 transMapV5,325 transMapV5,339 transMapV5,426 transMapV5,457 transMapV5,470 ucscToINSDC,35 ucscToRefSeq,29 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 wheeler est,783 intronEst,867 mrna,500 when augustusGene,188 augustusGene,238 chainNetRn6,417 chainRn6,414 est,146 est,156 est,684 intronEst,35 intronEst,227 intronEst,237 intronEst,765 mrna,92 mrna,102 mrna,400 netRn6,414 refSeqComposite,1092 refSeqComposite,1249 transMapEnsemblV5,468 transMapEstV5,437 transMapRefSeqV5,437 transMapRnaV5,437 transMapV5,543 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,239 where chainNetRn6,199 chainRn6,196 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,95 netRn6,196 transMapEnsemblV5,272 transMapEnsemblV5,374 transMapEnsemblV5,423 transMapEnsemblV5,511 transMapEstV5,241 transMapEstV5,343 transMapEstV5,392 transMapEstV5,480 transMapRefSeqV5,241 transMapRefSeqV5,343 transMapRefSeqV5,392 transMapRefSeqV5,480 transMapRnaV5,241 transMapRnaV5,343 transMapRnaV5,392 transMapRnaV5,480 transMapV5,347 transMapV5,449 transMapV5,498 transMapV5,586 uniprot,1192 whether chainNetRn6,868 chainRn6,865 netRn6,865 which augustusGene,159 augustusGene,227 chainNetRn6,334 chainNetRn6,626 chainNetRn6,833 chainRn6,331 chainRn6,623 chainRn6,830 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 est,106 est,233 est,499 est,524 est,671 intronEst,187 intronEst,314 intronEst,580 intronEst,605 intronEst,752 mrna,179 nestedRepeats,31 nestedRepeats,87 netRn6,331 netRn6,623 netRn6,830 refSeqComposite,47 refSeqComposite,262 refSeqComposite,1483 refSeqComposite,1511 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,145 transMapV5,692 uniprot,158 uniprot,1380 uniprot,1768 while chainNetRn6,223 chainRn6,220 netRn6,220 white gap,105 whole chainNetRn6,474 chainRn6,471 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,150 netRn6,471 refSeqComposite,1499 transMapEnsemblV5,607 transMapEstV5,576 transMapRefSeqV5,576 transMapRnaV5,576 transMapV5,682 whose refSeqComposite,221 refSeqComposite,350 refSeqComposite,967 transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards est,271 intronEst,352 mrna,217 will est,304 est,322 est,351 est,368 intronEst,385 intronEst,403 intronEst,432 intronEst,449 mrna,250 mrna,268 mrna,297 mrna,314 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish est,235 intronEst,316 mrna,181 refSeqComposite,173 xenoRefGene,207 with augustusGene,127 augustusGene,322 chainNetRn6,46 chainNetRn6,214 chainNetRn6,225 chainNetRn6,598 chainNetRn6,711 chainNetRn6,787 chainNetRn6,911 chainNetRn6,943 chainNetRn6,975 chainNetRn6,1112 chainRn6,43 chainRn6,211 chainRn6,222 chainRn6,595 chainRn6,708 chainRn6,784 chainRn6,908 chainRn6,940 chainRn6,972 chainRn6,1109 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 est,105 est,501 est,639 est,676 est,719 gap,53 gc5BaseBw,35 gold,52 gold,142 intronEst,186 intronEst,582 intronEst,720 intronEst,757 intronEst,800 microsat,69 microsat,76 mrna,435 nestedRepeats,133 netRn6,43 netRn6,211 netRn6,222 netRn6,595 netRn6,708 netRn6,784 netRn6,908 netRn6,940 netRn6,972 netRn6,1109 refSeqComposite,224 refSeqComposite,353 refSeqComposite,491 refSeqComposite,954 refSeqComposite,983 refSeqComposite,1042 refSeqComposite,1069 refSeqComposite,1095 refSeqComposite,1134 refSeqComposite,1240 refSeqComposite,1284 refSeqComposite,1402 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,183 transMapEnsemblV5,252 transMapEnsemblV5,353 transMapEnsemblV5,355 transMapEnsemblV5,584 transMapEstV5,152 transMapEstV5,221 transMapEstV5,322 transMapEstV5,324 transMapEstV5,553 transMapRefSeqV5,152 transMapRefSeqV5,221 transMapRefSeqV5,322 transMapRefSeqV5,324 transMapRefSeqV5,553 transMapRnaV5,152 transMapRnaV5,221 transMapRnaV5,322 transMapRnaV5,324 transMapRnaV5,553 transMapV5,258 transMapV5,327 transMapV5,428 transMapV5,430 transMapV5,659 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,230 xenoRefGene,274 within est,139 est,552 est,708 gold,117 intronEst,220 intronEst,633 intronEst,789 mrna,85 mrna,424 refSeqComposite,725 refSeqComposite,1273 simpleRepeat,37 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainNetRn6,1055 chainNetRn6,1097 chainRn6,1052 chainRn6,1094 est,802 intronEst,886 mrna,519 netRn6,1052 netRn6,1094 refSeqComposite,1733 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide est,745 intronEst,829 mrna,462 refSeqComposite,1723 transMapEnsemblV5,701 transMapEstV5,670 transMapRefSeqV5,670 transMapRnaV5,670 transMapV5,776 xenoRefGene,294 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 wrench refSeqComposite,753 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xm refSeqComposite,354 xm_ ncbiRefSeq,10 ncbiRefSeqOther,10 ncbiRefSeqPredicted,8 xml uniprot,1510 xr refSeqComposite,356 xr_ ncbiRefSeq,12 ncbiRefSeqOther,11 ncbiRefSeqPredicted,10 y ensGene,177 yap chainNetRn6,1038 chainRn6,1035 netRn6,1035 years uniprot,933 yet refSeqComposite,676 refSeqComposite,701 yip uniprot,2010 yl uniprot,2011 you est,234 intronEst,315 mrna,180 refSeqComposite,172 refSeqComposite,1352 refSeqComposite,1460 refSeqComposite,1544 refSeqComposite,1564 refSeqComposite,1634 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,206 younger nestedRepeats,94 your refSeqComposite,1526 refSeqComposite,1639 transMapEnsemblV5,632 transMapEstV5,601 transMapRefSeqV5,601 transMapRnaV5,601 transMapV5,707 uniprot,1783 yp refSeqComposite,229 refSeqComposite,232 refSeqComposite,242 yp_ ncbiRefSeq,14 ncbiRefSeqCurated,12 ncbiRefSeqOther,14 z chainNetRn6,1101 chainRn6,1098 netRn6,1098 zebrafish augustusGene,202 augustusGene,278 zhang chainNetRn6,939 chainNetRn6,1100 chainRn6,936 chainRn6,1097 netRn6,936 netRn6,1097 zheng chainNetRn6,938 chainRn6,935 netRn6,935 zhu transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 zinc uniprot,326 zoomed-in genscan,103