0 spMut,425 uniprot,1822 0.2 augustusGene,136 0.5 augustusGene,138 est,677 intronEst,752 mrna,393 xenoRefGene,264 000 blastCe6SG,100 est,637 gap,138 gold,263 gold,281 gold,287 intronEst,712 1 augustusGene,310 chainCe6,614 est,732 gap,137 gold,262 gold,280 intronEst,810 mrna,449 netCe6,73 netCe6,204 netCe6,527 tRNAs,93 tRNAs,462 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoMrna,467 xenoMrna,523 xenoRefGene,387 10 uniprot,1928 100 augustusGene,134 chainCe6,557 microsat,70 netCe6,495 1000-2000 augustusGene,161 1000000 spMut,427 uniprot,1824 103-7 chainCe6,615 netCe6,528 11 tRNAs,409 tRNAs,411 tRNAs,505 11484-9 chainCe6,559 netCe6,497 115-26 chainCe6,521 11928468 chainCe6,523 11932250 est,756 intronEst,834 mrna,473 xenoMrna,547 xenoRefGene,317 12 est,752 intronEst,830 mrna,469 xenoMrna,543 xenoRefGene,313 1247-56 tRNAs,508 12529312 chainCe6,617 netCe6,530 129 gold,166 13 chainCe6,613 netCe6,526 134-41 chainCe6,586 windowmaskerSdust,112 14500911 chainCe6,561 netCe6,499 14534192 augustusGene,340 14681350 est,738 intronEst,816 mrna,455 xenoMrna,529 15 chainCe6,583 microsat,30 microsat,79 microsat,130 simpleRepeat,90 tRNAs,95 windowmaskerSdust,109 xenoRefGene,236 151 gold,215 15108278 spMut,529 uniprot,2051 156 gold,273 15608248 xenoRefGene,393 16287941 chainCe6,588 windowmaskerSdust,114 181 gold,168 18218656 augustusGene,315 1870126 tRNAs,439 18984615 tRNAs,391 19 augustusGene,335 1988 tRNAs,350 1990 blastCe6SG,178 1991 tRNAs,432 1994 tRNAs,407 tRNAs,503 1997 tRNAs,460 1999 microsat,103 microsat,128 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainCe6,585 microsat,66 microsat,132 netCe6,107 netCe6,112 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainCe6,558 netCe6,496 tRNAs,123 2000 chainCe6,408 2002 chainCe6,520 est,750 intronEst,828 mrna,467 xenoMrna,541 xenoRefGene,311 2003 augustusGene,333 chainCe6,554 chainCe6,611 netCe6,492 netCe6,524 2004 est,730 intronEst,808 mrna,447 spMut,523 uniprot,2045 xenoMrna,521 2005 xenoRefGene,385 2006 chainCe6,581 windowmaskerSdust,107 2008 augustusGene,308 chainCe6,7 chainCe6,24 netCe6,7 netCe6,57 2009 tRNAs,384 2012 spMut,478 uniprot,2000 2014 xenoRefGene,352 2022_03 uniprot,1911 2023 uniprot,1191 2079-88 tRNAs,412 215 blastCe6SG,181 22 chainCe6,584 tRNAs,410 tRNAs,506 windowmaskerSdust,110 220 tRNAs,435 22102590 spMut,485 uniprot,2007 23 spMut,525 uniprot,2047 24 augustusGene,311 24259432 xenoRefGene,359 25 tRNAs,463 xenoMrna,474 xenoRefGene,271 27 microsat,131 simpleRepeat,91 273 gold,160 3 augustusGene,140 blastCe6SG,182 est,449 est,502 est,556 gold,177 intronEst,108 intronEst,524 intronEst,577 intronEst,631 microsat,68 netCe6,119 tRNAs,436 uniprot,1123 uniprot,1194 xenoMrna,90 3.1 augustusGene,24 30 chainCe6,556 netCe6,494 32 est,733 gold,226 intronEst,78 intronEst,811 mrna,450 xenoMrna,524 33 xenoRefGene,388 347 gold,167 35 gold,159 365 gold,186 37 tRNAs,386 378 gold,274 4 est,753 gold,207 gold,285 intronEst,831 mrna,470 xenoMrna,544 xenoRefGene,314 40 spMut,480 uniprot,2002 403-410 blastCe6SG,183 42 xenoRefGene,354 45 tRNAs,180 45-60 tRNAs,200 464-70 spMut,527 uniprot,2049 5 augustusGene,312 blastCe6SG,180 est,446 est,487 est,513 gold,190 intronEst,521 intronEst,562 intronEst,588 spMut,526 tRNAs,434 tRNAs,464 uniprot,2048 xenoMrna,88 5-base gc5Base,6 gc5Base,27 50 blastCe6SG,99 500 est,35 intronEst,46 505 gold,239 573 gold,217 gold,275 573-80 microsat,133 simpleRepeat,93 579 gold,227 596 gold,234 6 gold,185 6.3x ctgPos2,52 gold,150 60 blastCe6SG,114 blastCe6SG,126 blastCe6SG,134 60.0 tRNAs,166 637-44 augustusGene,313 656 gold,286 656-64 est,754 intronEst,832 mrna,471 xenoMrna,545 xenoRefGene,315 657 gold,208 659-71 tRNAs,437 667 gold,178 68 gold,238 7 tRNAs,507 722 gold,216 750 est,636 intronEst,711 781 gold,191 8029015 tRNAs,414 8165140 tRNAs,510 9023104 tRNAs,467 93 uniprot,1483 955-64 tRNAs,465 96 est,684 intronEst,759 mrna,400 9862982 microsat,135 simpleRepeat,95 99-100 tRNAs,81 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 blastCe6SG,94 chainCe6,33 chainCe6,104 chainCe6,158 chainCe6,346 chainCe6,352 chainCe6,358 chainCe6,362 chainCe6,373 chainCe6,405 chainCe6,455 chainCe6,529 chainCe6,553 chainCe6,565 chainCe6,594 est,118 est,135 est,170 est,196 est,377 est,436 est,440 est,566 est,592 est,600 est,653 est,672 gap,47 gap,51 gap,81 gap,86 gap,89 gap,95 gap,98 gc5Base,44 gold,49 gold,108 gold,114 intronEst,111 intronEst,145 intronEst,193 intronEst,210 intronEst,245 intronEst,271 intronEst,452 intronEst,511 intronEst,515 intronEst,641 intronEst,667 intronEst,675 intronEst,728 intronEst,747 microsat,53 microsat,119 mrna,64 mrna,81 mrna,116 mrna,142 mrna,323 mrna,369 mrna,388 netCe6,139 netCe6,149 netCe6,153 netCe6,220 netCe6,237 netCe6,240 netCe6,290 netCe6,304 netCe6,310 netCe6,316 netCe6,320 netCe6,323 netCe6,351 netCe6,467 netCe6,491 netCe6,507 quality,45 quality,60 simpleRepeat,79 spMut,54 spMut,65 spMut,124 spMut,134 spMut,158 spMut,165 spMut,187 spMut,207 spMut,335 spMut,381 spMut,409 spMut,495 spMut,501 spMut,510 tRNAs,35 tRNAs,59 tRNAs,68 tRNAs,86 tRNAs,120 tRNAs,131 tRNAs,144 tRNAs,253 tRNAs,310 tRNAs,371 tRNAs,445 tRNAs,471 tRNAs,475 tRNAs,491 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoMrna,109 xenoMrna,138 xenoMrna,155 xenoMrna,190 xenoMrna,216 xenoMrna,397 xenoMrna,442 xenoMrna,462 xenoRefGene,240 xenoRefGene,259 xenoRefGene,329 xenoRefGene,372 a91-114-31-123 chainCe6,398 aa chainCe6,461 chainCe6,571 unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainCe6,305 spMut,131 about est,34 est,403 intronEst,45 intronEst,478 microsat,98 mrna,340 netCe6,145 netCe6,158 netCe6,340 simpleRepeat,59 spMut,53 spMut,186 xenoMrna,414 xenoRefGene,178 above netCe6,217 netCe6,229 netCe6,249 tRNAs,122 uniprot,1525 abundance chainCe6,140 acad chainCe6,549 netCe6,487 access spMut,310 spMut,441 uniprot,896 uniprot,1706 uniprot,1838 accession xenoRefGene,118 xenoRefGene,130 according augustusGene,114 accordingly tRNAs,281 acgt chainCe6,397 acid blastCe6SG,66 spMut,6 spMut,87 spMut,121 unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids blastCe6SG,140 est,728 intronEst,806 microsat,126 mrna,445 simpleRepeat,86 spMut,476 tRNAs,382 tRNAs,405 tRNAs,458 tRNAs,501 uniprot,620 uniprot,1998 xenoMrna,519 xenoRefGene,350 xenoRefGene,383 acronym uniprot,546 added chainCe6,319 uniprot,1187 admin uniprot,1917 advanced spMut,34 advice chainCe6,438 chainCe6,481 netCe6,440 spMut,455 affine chainCe6,43 after netCe6,398 uniprot,294 uniprot,1329 ag intronEst,85 again uniprot,629 uniprot,1500 against est,621 intronEst,37 intronEst,696 mrna,333 mrna,361 xenoMrna,407 xenoMrna,433 xenoRefGene,222 agarwala chainCe6,462 chainCe6,572 windowmaskerSdust,98 al xenoRefGene,341 alejo uniprot,1966 algorithm augustusGene,130 tRNAs,40 algorithms uniprot,52 align chainCe6,156 est,651 intronEst,726 uniprot,1216 aligned blastCe6SG,49 blastCe6SG,74 chainCe6,308 est,620 est,656 intronEst,36 intronEst,149 intronEst,695 intronEst,731 mrna,360 mrna,372 spMut,241 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoMrna,432 xenoMrna,445 xenoRefGene,221 xenoRefGene,243 aligning chainCe6,93 chainCe6,239 chainCe6,269 est,389 intronEst,464 uniprot,952 alignment blastCe6SG,172 chainCe6,216 est,58 est,412 est,661 est,746 intronEst,136 intronEst,487 intronEst,736 intronEst,824 mrna,39 mrna,351 mrna,377 mrna,463 netCe6,10 spMut,274 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoMrna,43 xenoMrna,425 xenoMrna,450 xenoMrna,537 xenoRefGene,232 xenoRefGene,248 xenoRefGene,307 alignments augustusGene,300 blastCe6SG,20 chainCe6,11 chainCe6,18 chainCe6,324 chainCe6,336 chainCe6,344 chainCe6,372 chainCe6,516 chainCe6,606 est,16 est,670 intronEst,17 intronEst,745 mrna,17 mrna,386 netCe6,132 netCe6,256 netCe6,519 tRNAs,241 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoMrna,17 xenoMrna,460 xenoRefGene,257 all augustusGene,207 chainCe6,343 est,192 est,246 est,290 est,385 est,456 gold,126 intronEst,114 intronEst,267 intronEst,321 intronEst,365 intronEst,460 intronEst,531 mrna,138 mrna,192 mrna,236 spMut,204 tRNAs,215 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 xenoMrna,212 xenoMrna,266 xenoMrna,310 allowed est,632 intronEst,707 allows augustusGene,168 chainCe6,38 est,380 intronEst,455 mrna,326 xenoMrna,400 xenoRefGene,149 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 already netCe6,301 also blastCe6SG,142 chainCe6,49 est,262 est,370 est,569 gold,34 gold,153 intronEst,337 intronEst,445 intronEst,644 mrna,208 mrna,316 spMut,401 uniprot,666 uniprot,706 uniprot,1799 xenoMrna,282 xenoMrna,390 alt uniprot,850 alter est,129 intronEst,204 mrna,75 xenoMrna,149 alternating gold,80 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 although tRNAs,133 altschul blastCe6SG,160 always gold,111 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 xenoMrna,87 amino blastCe6SG,65 blastCe6SG,139 spMut,5 spMut,86 spMut,120 unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 an chainCe6,112 chainCe6,139 chainCe6,145 est,418 est,465 est,548 gc5Base,65 gold,181 gold,230 gold,257 intronEst,61 intronEst,493 intronEst,540 intronEst,623 quality,79 tRNAs,26 tRNAs,34 tRNAs,46 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,143 xenoRefGene,231 xenoRefGene,343 analysis spMut,328 tRNAs,400 tRNAs,495 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 blastCe6SG,12 blastCe6SG,130 blastCe6SG,205 chainCe6,56 chainCe6,71 chainCe6,188 chainCe6,194 chainCe6,206 chainCe6,219 chainCe6,314 chainCe6,351 chainCe6,360 chainCe6,434 chainCe6,485 chainCe6,491 chainCe6,502 chainCe6,539 chainCe6,544 ctgPos2,5 est,10 est,26 est,48 est,88 est,132 est,282 est,425 est,439 est,447 est,575 est,681 gap,5 gap,28 gap,50 gap,103 gc5Base,9 gc5Base,22 gc5Base,74 gold,6 gold,43 gold,82 gold,96 gold,102 intronEst,11 intronEst,27 intronEst,82 intronEst,126 intronEst,163 intronEst,207 intronEst,357 intronEst,500 intronEst,514 intronEst,522 intronEst,650 intronEst,756 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,10 mrna,24 mrna,29 mrna,78 mrna,228 mrna,347 mrna,397 netCe6,40 netCe6,64 netCe6,121 netCe6,267 netCe6,345 netCe6,377 netCe6,388 netCe6,397 netCe6,407 netCe6,436 netCe6,447 netCe6,458 netCe6,477 netCe6,482 quality,9 quality,101 simpleRepeat,9 simpleRepeat,42 spMut,9 spMut,22 spMut,32 spMut,38 spMut,70 spMut,84 spMut,108 spMut,127 spMut,177 spMut,228 spMut,301 spMut,392 spMut,459 spMut,506 spMut,514 tRNAs,10 tRNAs,33 tRNAs,75 tRNAs,103 tRNAs,175 tRNAs,209 tRNAs,316 tRNAs,331 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoMrna,9 xenoMrna,20 xenoMrna,33 xenoMrna,152 xenoMrna,302 xenoMrna,421 xenoMrna,471 xenoRefGene,8 xenoRefGene,17 xenoRefGene,45 xenoRefGene,79 xenoRefGene,129 xenoRefGene,154 xenoRefGene,187 xenoRefGene,200 xenoRefGene,268 xenoRefGene,295 xenoRefGene,380 annot unipOther,2 annotated spMut,144 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation netCe6,52 spMut,331 spMut,362 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations blastCe6SG,28 tRNAs,99 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,188 answers spMut,72 any est,305 est,518 intronEst,380 intronEst,593 mrna,251 uniprot,660 uniprot,1146 uniprot,1250 xenoMrna,325 anything tRNAs,118 appear tRNAs,326 apply est,188 intronEst,263 mrna,134 xenoMrna,208 approach spMut,281 uniprot,1531 appropriate xenoRefGene,112 apr est,751 intronEst,829 mrna,468 tRNAs,504 xenoMrna,542 xenoRefGene,312 apsects gc5Base,51 archaea tRNAs,104 archive uniprot,893 uniprot,1670 uniprot,1908 archives spMut,435 uniprot,1832 are augustusGene,27 chainCe6,100 chainCe6,171 chainCe6,182 chainCe6,228 chainCe6,414 est,30 est,67 est,149 est,159 gap,16 gap,115 gap,128 gold,51 gold,74 gold,91 gold,131 gold,158 intronEst,41 intronEst,224 intronEst,234 intronEst,766 microsat,16 microsat,25 microsat,52 mrna,48 mrna,95 mrna,105 netCe6,75 netCe6,96 netCe6,103 netCe6,186 simpleRepeat,49 spMut,60 spMut,116 spMut,174 spMut,180 tRNAs,105 tRNAs,168 tRNAs,190 tRNAs,202 tRNAs,262 tRNAs,266 tRNAs,292 tRNAs,297 tRNAs,333 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoMrna,52 xenoMrna,118 xenoMrna,169 xenoMrna,179 xenoRefGene,40 xenoRefGene,105 xenoRefGene,203 areas chainCe6,443 gc5Base,37 articles spMut,214 spMut,219 tRNAs,365 artifical gap,136 gap,146 gold,258 gold,279 spMut,85 artificially-introduced spMut,172 as augustusGene,77 augustusGene,79 chainCe6,451 ctgPos2,13 est,565 gap,18 gold,36 gold,256 intronEst,640 microsat,21 netCe6,148 netCe6,188 netCe6,211 netCe6,226 netCe6,294 netCe6,349 quality,91 spMut,153 spMut,231 spMut,380 tRNAs,42 tRNAs,288 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 xenoMrna,125 xenoMrna,130 ascii uniprot,1762 aspects quality,67 assembled ctgPos2,14 gold,24 gold,205 assemblies augustusGene,196 augustusGene,237 chainCe6,227 chainCe6,303 assembly augustusGene,197 chainCe6,110 chainCe6,118 ctgPos2,2 ctgPos2,48 gap,14 gap,64 gap,124 gold,1 gold,2 gold,14 gold,142 gold,155 gold,164 netCe6,61 quality,26 quality,97 uniprot,445 uniprot,701 associated est,110 gc5Base,34 intronEst,185 simpleRepeat,51 uniprot,787 astashyn xenoRefGene,328 at blastCe6SG,132 chainCe6,423 chainCe6,469 chainCe6,474 ctgPos2,34 est,517 est,562 est,682 est,698 intronEst,67 intronEst,76 intronEst,101 intronEst,592 intronEst,637 intronEst,757 intronEst,776 microsat,28 microsat,77 mrna,398 mrna,415 netCe6,105 netCe6,289 netCe6,412 netCe6,425 quality,29 spMut,123 spMut,145 spMut,469 tRNAs,107 tRNAs,339 uniprot,825 uniprot,1946 uniprot,1991 xenoMrna,472 xenoMrna,489 xenoRefGene,93 xenoRefGene,269 xenoRefGene,285 attempt est,549 intronEst,624 atypical tRNAs,274 aug tRNAs,433 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml chainCe6,459 chainCe6,569 windowmaskerSdust,95 automated spMut,327 uniprot,1468 uniprot,1727 automatically uniprot,1565 av spMut,493 uniprot,2015 available augustusGene,239 tRNAs,106 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 averaged quality,52 aware uniprot,1456 axt chainCe6,335 axtchain chainCe6,340 chainCe6,465 b tRNAs,36 back chainCe6,320 bacteria tRNAs,102 baertsch augustusGene,290 chainCe6,501 chainCe6,526 chainCe6,597 netCe6,457 netCe6,464 netCe6,510 bairoch spMut,500 uniprot,2022 base est,375 est,409 est,665 est,673 est,685 gold,264 gold,282 intronEst,450 intronEst,484 intronEst,740 intronEst,748 intronEst,760 mrna,348 mrna,381 mrna,389 mrna,401 quality,23 quality,40 xenoMrna,422 xenoMrna,454 xenoMrna,463 xenoMrna,475 xenoRefGene,252 xenoRefGene,260 xenoRefGene,272 based augustusGene,28 chainCe6,230 chainCe6,256 gold,52 tRNAs,268 uniprot,60 uniprot,727 uniprot,1604 bases est,36 est,386 est,638 gc5Base,25 gold,179 gold,192 gold,228 gold,240 gold,276 gold,288 intronEst,47 intronEst,79 intronEst,461 intronEst,713 basic blastCe6SG,170 basis uniprot,1570 bbi spMut,419 be augustusGene,99 chainCe6,66 est,109 est,122 est,144 est,253 est,263 est,294 est,312 est,322 est,371 est,497 est,605 gc5Base,41 intronEst,58 intronEst,184 intronEst,197 intronEst,219 intronEst,328 intronEst,338 intronEst,369 intronEst,387 intronEst,397 intronEst,446 intronEst,572 intronEst,680 microsat,19 microsat,39 mrna,68 mrna,90 mrna,199 mrna,209 mrna,240 mrna,258 mrna,268 mrna,317 netCe6,115 quality,57 simpleRepeat,44 spMut,315 spMut,340 spMut,364 spMut,372 spMut,395 spMut,402 tRNAs,128 tRNAs,220 tRNAs,227 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoMrna,142 xenoMrna,164 xenoMrna,273 xenoMrna,283 xenoMrna,314 xenoMrna,332 xenoMrna,342 xenoMrna,391 xenoRefGene,88 bears est,94 intronEst,169 because est,597 intronEst,672 uniprot,674 xenoMrna,104 bed3 windowmaskerSdust,76 been chainCe6,290 gold,147 gold,204 intronEst,8 spMut,97 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before est,534 intronEst,609 netCe6,396 uniprot,934 being spMut,154 below chainCe6,404 tRNAs,179 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,715 intronEst,793 microsat,102 microsat,112 microsat,114 mrna,432 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 xenoMrna,506 best blastCe6SG,107 est,680 intronEst,755 mrna,396 netCe6,19 netCe6,198 uniprot,1074 uniprot,1415 xenoMrna,470 xenoRefGene,267 beta uniprot,364 better est,74 mrna,55 tRNAs,254 xenoMrna,59 between chainCe6,345 est,17 est,85 gap,74 gap,141 gold,46 gold,88 gold,93 gold,266 intronEst,18 intronEst,160 mrna,18 netCe6,343 tRNAs,199 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed spMut,336 uniprot,1736 bigbedtobed spMut,369 spMut,414 uniprot,1767 uniprot,1812 binaries spMut,393 uniprot,1791 binary spMut,383 uniprot,1781 biochemical tRNAs,271 biocomput chainCe6,519 bioinformatics augustusGene,307 augustusGene,332 chainCe6,580 windowmaskerSdust,106 biol blastCe6SG,177 tRNAs,431 biological uniprot,320 birds augustusGene,203 bits tRNAs,124 tRNAs,167 tRNAs,201 black gap,19 gap,58 blast blastCe6SG,151 blastCe6SG,158 uniprot,949 uniprot,1084 uniprot,1115 blast-like est,745 intronEst,823 mrna,462 xenoMrna,536 xenoRefGene,306 blastz chainCe6,310 chainCe6,420 chainCe6,608 netCe6,255 netCe6,422 netCe6,521 blat blastCe6SG,57 blastCe6SG,184 est,625 est,634 est,743 intronEst,700 intronEst,709 intronEst,821 mrna,366 mrna,460 spMut,247 xenoMrna,16 xenoMrna,440 xenoMrna,534 xenoRefGene,228 blat--the xenoRefGene,305 blocks chainCe6,369 chainCe6,390 gold,98 gold,125 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bolchi tRNAs,474 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainCe6,53 chainCe6,75 chainCe6,130 netCe6,386 tRNAs,329 uniprot,675 uniprot,1616 xenoRefGene,126 xenoRefGene,197 boundaries blastCe6SG,62 gold,73 box chainCe6,280 est,208 est,219 est,259 gap,59 intronEst,283 intronEst,294 intronEst,334 mrna,154 mrna,165 mrna,205 netCe6,140 tRNAs,37 xenoMrna,228 xenoMrna,239 xenoMrna,279 xenoRefGene,216 boxes chainCe6,81 chainCe6,91 est,179 gap,20 intronEst,254 mrna,125 netCe6,129 xenoMrna,199 bp gap,139 branch-point augustusGene,55 brian blastCe6SG,203 spMut,460 uniprot,1959 bridge gold,123 bridged gap,48 briefly uniprot,778 brown gold,83 gold,97 xenoRefGene,322 browser chainCe6,489 est,226 est,339 est,356 gold,251 intronEst,301 intronEst,414 intronEst,431 mrna,172 mrna,285 mrna,302 netCe6,445 spMut,43 spMut,321 uniprot,1544 uniprot,1721 xenoMrna,246 xenoMrna,359 xenoMrna,376 browsing uniprot,1662 bruccoleri tRNAs,353 build uniprot,1552 built augustusGene,51 augustusGene,67 burks tRNAs,419 but blastCe6SG,101 est,454 est,511 est,564 intronEst,529 intronEst,586 intronEst,639 netCe6,231 spMut,148 uniprot,638 uniprot,1047 button chainCe6,251 by augustusGene,147 augustusGene,266 augustusGene,282 blastCe6SG,8 blastCe6SG,187 blastCe6SG,200 chainCe6,68 chainCe6,84 chainCe6,221 chainCe6,284 chainCe6,427 chainCe6,453 chainCe6,477 chainCe6,499 ctgPos2,29 ctgPos2,54 est,464 est,633 est,711 gap,41 gap,117 gc5Base,81 gold,76 intronEst,87 intronEst,539 intronEst,708 intronEst,789 microsat,110 mrna,428 netCe6,99 netCe6,117 netCe6,303 netCe6,419 netCe6,429 netCe6,455 quality,107 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 spMut,20 spMut,29 spMut,33 spMut,102 spMut,233 spMut,288 spMut,451 tRNAs,20 tRNAs,335 tRNAs,347 tRNAs,490 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoMrna,502 xenoRefGene,102 xenoRefGene,107 xenoRefGene,171 xenoRefGene,189 xenoRefGene,195 xenoRefGene,292 xenoRefGene,297 c blastCe6SG,3 blastCe6SG,30 blastCe6SG,43 blastCe6SG,52 blastCe6SG,77 blastCe6SG,87 chainCe6,1 chainCe6,4 chainCe6,20 chainCe6,29 chainCe6,54 chainCe6,57 chainCe6,108 chainCe6,116 chainCe6,163 chainCe6,294 chainCe6,296 chainCe6,348 chainCe6,354 est,1 est,4 est,18 est,614 gc5Base,23 gold,17 intronEst,3 intronEst,19 intronEst,120 intronEst,689 mrna,1 mrna,4 mrna,19 mrna,356 netCe6,1 netCe6,4 netCe6,20 netCe6,22 netCe6,30 netCe6,46 quality,3 quality,95 tRNAs,349 tRNAs,420 windowmaskerSdust,30 xenoMrna,29 xenoMrna,435 xenoRefGene,24 xenoRefGene,224 c-114100-125-31 chainCe6,399 c.elegans blastCe6SG,1 caejap1 spMut,418 uniprot,1816 caejap1.fa windowmaskerSdust,62 windowmaskerSdust,71 caenorhabditis augustusGene,212 california chainCe6,473 netCe6,416 called spMut,354 can augustusGene,98 chainCe6,48 chainCe6,65 est,121 est,252 intronEst,196 intronEst,327 mrna,67 mrna,198 simpleRepeat,35 spMut,314 spMut,339 spMut,363 spMut,371 spMut,394 spMut,400 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoMrna,141 xenoMrna,272 xenoRefGene,87 candidates tRNAs,51 tRNAs,57 cannot uniprot,1269 canonical intronEst,70 cap-selected est,527 intronEst,602 cap-selection est,536 intronEst,611 carefully tRNAs,229 cases chainCe6,152 netCe6,86 tRNAs,224 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized netCe6,187 cauldron chainCe6,536 netCe6,474 cause netCe6,169 caused chainCe6,67 cdna augustusGene,299 est,429 est,432 intronEst,504 intronEst,507 ce6 blastCe6SG,35 chainCe6,9 chainCe6,22 chainCe6,26 netCe6,9 netCe6,59 netCe6,60 cell uniprot,563 cells est,424 intronEst,499 center ctgPos2,33 cerevisiae augustusGene,222 chain chainCe6,3 chainCe6,78 netCe6,24 netCe6,92 netCe6,147 netCe6,263 netCe6,306 netCe6,317 netCe6,325 netCe6,330 netCe6,353 netCe6,362 uniprot,290 chained blastCe6SG,9 blastCe6SG,91 chainCe6,10 chainnet netCe6,280 netCe6,405 chains blastCe6SG,109 blastCe6SG,122 chainCe6,155 chainCe6,167 chainCe6,178 chainCe6,224 chainCe6,263 chainCe6,387 chainCe6,402 chainCe6,413 chainCe6,496 netCe6,74 netCe6,79 netCe6,101 netCe6,113 netCe6,120 netCe6,177 netCe6,251 netCe6,272 netCe6,287 netCe6,347 netCe6,378 unipChain,1 unipChain,7 uniprot,288 chan tRNAs,366 change est,125 intronEst,200 mrna,71 spMut,122 xenoMrna,145 changed uniprot,1382 characteristic est,319 intronEst,394 mrna,265 xenoMrna,339 check chainCe6,246 checkbox uniprot,231 chiaromonte chainCe6,506 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 est,275 est,314 intronEst,350 intronEst,389 mrna,221 mrna,260 uniprot,657 xenoMrna,295 xenoMrna,334 chosen est,337 intronEst,412 mrna,283 xenoMrna,357 chr4 chainCe6,278 chr6 spMut,423 uniprot,1820 chris uniprot,1954 chrom spMut,422 uniprot,1819 chromosome chainCe6,204 chainCe6,233 chainCe6,258 chainCe6,266 chainCe6,276 chainCe6,285 chainCe6,350 chainCe6,356 gap,148 gold,259 netCe6,210 netCe6,225 netCe6,241 uniprot,1416 chromosome-based chainCe6,226 chrun gap,147 gold,260 gold,270 cite tRNAs,362 clawson blastCe6SG,207 gc5Base,83 quality,109 cleaved uniprot,249 click gc5Base,56 netCe6,137 netCe6,151 quality,72 spMut,190 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,110 xenoRefGene,214 clicking uniprot,1633 cloned est,434 intronEst,509 closest augustusGene,241 cloverleaf tRNAs,312 cm xenoRefGene,333 code quality,104 spMut,377 spMut,391 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,212 codon mrna,321 mrna,346 xenoMrna,395 xenoMrna,420 xenoRefGene,138 xenoRefGene,145 xenoRefGene,160 xenoRefGene,190 codons xenoRefGene,165 xenoRefGene,172 coiled-coil uniprot,367 collection xenoRefGene,33 color chainCe6,254 est,131 est,316 intronEst,206 intronEst,391 mrna,77 mrna,262 xenoMrna,151 xenoMrna,336 xenoRefGene,58 xenoRefGene,169 coloration gold,84 colored chainCe6,229 spMut,175 spMut,181 uniprot,160 uniprot,176 coloring chainCe6,245 est,410 intronEst,485 mrna,322 mrna,349 xenoMrna,396 xenoMrna,423 xenoRefGene,139 xenoRefGene,146 xenoRefGene,184 colors xenoRefGene,81 xenoRefGene,161 combination est,278 intronEst,353 mrna,224 xenoMrna,298 combinations xenoMrna,120 combines gold,252 command uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 comments spMut,171 comparative chainCe6,12 netCe6,12 compare mrna,331 xenoMrna,405 xenoRefGene,155 comparison uniprot,1260 compiled spMut,373 uniprot,1771 complete spMut,292 completely uniprot,1464 xenoRefGene,137 complex chainCe6,123 components gold,127 composed uniprot,1396 compositional uniprot,399 computational uniprot,51 concerned spMut,25 condition spMut,59 conditional augustusGene,118 configuration chainCe6,220 est,49 gc5Base,60 gc5Base,69 intronEst,127 mrna,30 netCe6,65 quality,75 quality,83 spMut,109 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoMrna,34 xenoRefGene,46 configured est,372 gc5Base,42 intronEst,447 mrna,318 quality,58 xenoMrna,392 xenoRefGene,89 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 considerable est,608 intronEst,683 considered intronEst,59 consistency uniprot,402 consortium spMut,464 uniprot,1986 construct gap,144 consult est,220 intronEst,295 mrna,166 spMut,63 xenoMrna,240 contact uniprot,686 uniprot,1440 contain uniprot,1163 contained netCe6,379 containing gold,165 gold,195 gold,214 gold,243 contains blastCe6SG,18 est,245 gap,65 intronEst,320 mrna,191 xenoMrna,265 xenoRefGene,142 contamination est,596 intronEst,93 intronEst,671 content augustusGene,71 gc5Base,31 conterio tRNAs,472 context gap,85 contig gap,87 gap,135 gold,72 gold,141 contig0 gold,211 contig10115 gold,213 contigs ctgPos2,1 ctgPos2,3 ctgPos2,18 gap,79 gap,101 gold,26 gold,29 gold,47 gold,64 gold,89 gold,106 gold,161 gold,175 gold,187 gold,202 control tRNAs,498 controls xenoRefGene,92 convenience uniprot,404 conventions chainCe6,218 est,47 est,55 intronEst,125 intronEst,133 mrna,28 mrna,36 netCe6,63 spMut,107 uniprot,447 xenoMrna,32 xenoMrna,40 xenoRefGene,44 xenoRefGene,52 converted chainCe6,326 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corresponds est,228 intronEst,303 mrna,174 xenoMrna,248 covariance tRNAs,60 tRNAs,402 cove tRNAs,64 cove-predicted tRNAs,341 cover est,529 intronEst,604 coverage ctgPos2,53 gold,151 uniprot,1485 covered netCe6,302 covering gold,284 create windowmaskerSdust,48 created microsat,89 spMut,450 uniprot,824 uniprot,1942 creates chainCe6,361 credits augustusGene,247 blastCe6SG,144 chainCe6,419 ctgPos2,45 est,693 gc5Base,71 intronEst,771 microsat,104 mrna,409 netCe6,403 quality,85 simpleRepeat,66 spMut,446 tRNAs,328 uniprot,1938 xenoMrna,483 xenoRefGene,280 criteria est,292 est,310 est,348 est,366 intronEst,367 intronEst,385 intronEst,423 intronEst,441 mrna,238 mrna,256 mrna,294 mrna,312 xenoMrna,312 xenoMrna,330 xenoMrna,368 xenoMrna,386 cruz chainCe6,476 netCe6,418 culex augustusGene,220 curated spMut,98 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,296 xenoRefGene,373 curators spMut,236 current est,163 intronEst,238 mrna,109 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 xenoMrna,183 currently gold,69 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine gc5Base,24 d augustusGene,293 chainCe6,533 chainCe6,602 netCe6,471 netCe6,515 d23-6 est,736 intronEst,814 mrna,453 xenoMrna,527 d501-4 xenoRefGene,391 d71-5 spMut,483 uniprot,2005 d756-63 xenoRefGene,357 d93-7 tRNAs,389 da est,716 intronEst,794 mrna,433 xenoMrna,507 dark unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,75 darker intronEst,142 darkly est,69 mrna,50 xenoMrna,54 data est,703 gap,44 gap,134 gc5Base,73 intronEst,781 microsat,47 mrna,420 spMut,95 spMut,309 spMut,313 spMut,324 spMut,348 spMut,440 tRNAs,360 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoMrna,494 xenoRefGene,36 xenoRefGene,290 database chainCe6,492 est,734 intronEst,812 mrna,451 netCe6,448 quality,99 spMut,44 spMut,93 spMut,481 spMut,509 tRNAs,110 tRNAs,372 tRNAs,387 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoMrna,525 xenoRefGene,355 xenoRefGene,376 xenoRefGene,389 databases est,583 est,710 intronEst,97 intronEst,658 intronEst,788 mrna,427 tRNAs,489 xenoMrna,501 david chainCe6,486 de augustusGene,303 default chainCe6,222 uniprot,225 xenoRefGene,103 xenoRefGene,196 defined uniprot,305 uniprot,1387 degraded est,498 intronEst,573 degree est,593 intronEst,668 deletion chainCe6,105 chainCe6,538 netCe6,476 deletions chainCe6,73 chainCe6,138 dense est,61 gold,58 intronEst,139 mrna,42 xenoMrna,46 depending uniprot,442 uniprot,808 depicts gap,10 gold,62 windowmaskerSdust,15 deposited est,570 intronEst,645 deprecated uniprot,1044 derived netCe6,253 tRNAs,129 uniprot,830 described netCe6,260 spMut,152 spMut,224 uniprot,1524 describes augustusGene,226 description augustusGene,12 blastCe6SG,15 chainCe6,14 ctgPos2,7 est,12 est,112 gap,7 gc5Base,11 gold,8 intronEst,13 intronEst,187 microsat,10 mrna,12 mrna,58 netCe6,14 netCe6,265 quality,11 simpleRepeat,11 spMut,11 tRNAs,13 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoMrna,11 xenoMrna,132 xenoRefGene,11 xenoRefGene,99 descriptions augustusGene,91 designed uniprot,1355 desired est,277 intronEst,352 mrna,223 xenoMrna,297 destined uniprot,244 detailed augustusGene,90 netCe6,143 netCe6,162 tRNAs,97 uniprot,692 details gold,143 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 detected tRNAs,377 detection tRNAs,39 tRNAs,449 determined windowmaskerSdust,19 determining netCe6,167 developed chainCe6,422 chainCe6,452 chainCe6,468 netCe6,411 netCe6,424 di-nucleotide microsat,3 microsat,32 diagnosis spMut,69 dieci tRNAs,476 diekhans augustusGene,288 spMut,290 spMut,458 uniprot,1540 uniprot,1957 diemand spMut,492 uniprot,2014 differ est,395 intronEst,470 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 gc5Base,50 netCe6,242 quality,66 uniprot,634 xenoMrna,113 direction est,81 est,99 intronEst,156 intronEst,174 directly uniprot,993 discarded chainCe6,410 xenoRefGene,238 discover blastCe6SG,60 disease spMut,132 spMut,143 spMut,160 uniprot,545 uniprot,616 diseases simpleRepeat,54 disorders spMut,28 display chainCe6,196 chainCe6,217 chainCe6,260 chainCe6,490 est,46 est,54 est,62 est,127 est,154 est,184 est,318 est,342 est,358 est,374 est,384 gold,121 intronEst,112 intronEst,124 intronEst,132 intronEst,140 intronEst,202 intronEst,229 intronEst,259 intronEst,393 intronEst,417 intronEst,433 intronEst,449 intronEst,459 mrna,27 mrna,35 mrna,43 mrna,73 mrna,100 mrna,130 mrna,264 mrna,288 mrna,304 mrna,320 netCe6,62 netCe6,68 netCe6,127 netCe6,156 netCe6,185 netCe6,446 quality,103 spMut,106 uniprot,446 xenoMrna,31 xenoMrna,39 xenoMrna,47 xenoMrna,147 xenoMrna,174 xenoMrna,204 xenoMrna,338 xenoMrna,362 xenoMrna,378 xenoMrna,394 xenoRefGene,43 xenoRefGene,51 xenoRefGene,80 xenoRefGene,116 xenoRefGene,159 displayed chainCe6,415 gc5Base,54 intronEst,767 netCe6,104 netCe6,201 quality,70 xenoRefGene,204 displays chainCe6,80 microsat,13 simpleRepeat,14 tRNAs,16 xenoMrna,14 dissertation augustusGene,105 distant est,553 intronEst,628 distinguished gold,75 distributions augustusGene,83 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged netCe6,402 divided uniprot,56 dj blastCe6SG,169 est,720 intronEst,798 mrna,437 xenoMrna,511 dl est,724 intronEst,802 mrna,441 xenoMrna,515 dna microsat,123 simpleRepeat,83 tRNAs,427 tRNAs,488 xenoMrna,110 do tRNAs,152 tRNAs,305 uniprot,168 uniprot,1129 does tRNAs,113 tRNAs,135 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 double chainCe6,88 chainCe6,119 double-lined chainCe6,180 double-sided chainCe6,62 download spMut,344 uniprot,1744 uniprot,1983 downloaded spMut,341 spMut,379 uniprot,1741 uniprot,1777 downloading spMut,389 uniprot,1787 downloads uniprot,1698 dr xenoRefGene,367 draft gold,13 drastically intronEst,99 drawn gap,55 gold,117 draws spMut,282 uniprot,1532 drosophila augustusGene,213 due chainCe6,102 chainCe6,173 chainCe6,185 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainCe6,537 netCe6,475 durbin tRNAs,396 during gap,105 netCe6,307 dynamic chainCe6,312 chainCe6,374 e spMut,499 tRNAs,352 uniprot,2021 e.g chainCe6,277 uniprot,398 uniprot,467 each blastCe6SG,71 chainCe6,214 est,217 intronEst,292 mrna,163 quality,22 quality,30 uniprot,151 xenoMrna,237 echo uniprot,1925 eddy tRNAs,65 tRNAs,394 tRNAs,442 edge uniprot,1182 uniprot,1451 educated tRNAs,255 effect est,568 intronEst,643 either chainCe6,85 gap,34 uniprot,816 uniprot,1398 elegans blastCe6SG,4 blastCe6SG,31 blastCe6SG,44 blastCe6SG,53 chainCe6,2 chainCe6,5 chainCe6,21 chainCe6,55 chainCe6,109 chainCe6,295 chainCe6,349 netCe6,2 netCe6,5 netCe6,21 netCe6,47 elements tRNAs,302 eliminate est,641 intronEst,716 eliminating intronEst,105 em chainCe6,457 chainCe6,567 windowmaskerSdust,93 emerged est,538 intronEst,613 netCe6,313 encode tRNAs,171 encodes tRNAs,143 end est,488 est,506 est,516 est,557 intronEst,563 intronEst,581 intronEst,591 intronEst,632 spMut,426 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,86 ensembl uniprot,731 uniprot,834 uniprot,865 enter chainCe6,271 entered est,254 intronEst,329 mrna,200 xenoMrna,274 entire windowmaskerSdust,37 entirely uniprot,1434 ermolaeva xenoRefGene,330 especially est,155 intronEst,230 mrna,101 xenoMrna,175 est est,11 est,87 est,183 est,419 est,582 est,603 est,655 est,701 intronEst,12 intronEst,62 intronEst,96 intronEst,122 intronEst,162 intronEst,258 intronEst,494 intronEst,657 intronEst,678 intronEst,730 intronEst,779 mrna,11 xenoMrna,10 ests est,3 est,6 est,23 est,29 est,193 est,287 est,302 est,343 est,361 est,458 est,503 est,514 est,616 est,643 intronEst,2 intronEst,5 intronEst,24 intronEst,40 intronEst,109 intronEst,115 intronEst,150 intronEst,268 intronEst,362 intronEst,377 intronEst,418 intronEst,436 intronEst,533 intronEst,578 intronEst,589 intronEst,691 intronEst,718 et xenoRefGene,340 etc uniprot,479 eukaryotes tRNAs,101 eukaryotic tRNAs,483 evaluate uniprot,1461 even est,577 est,584 intronEst,652 intronEst,659 uniprot,136 every netCe6,26 uniprot,1571 evidence gold,56 intronEst,65 spMut,232 evolution chainCe6,534 netCe6,472 ew blastCe6SG,167 exact tRNAs,264 uniprot,1622 uniprot,1747 example est,186 est,239 intronEst,261 intronEst,314 mrna,132 mrna,185 spMut,413 uniprot,1450 uniprot,1811 uniprot,1901 xenoMrna,206 xenoMrna,259 except uniprot,508 exclude est,134 est,328 est,334 intronEst,209 intronEst,403 intronEst,409 mrna,80 mrna,274 mrna,280 xenoMrna,154 xenoMrna,348 xenoMrna,354 exe uniprot,1918 exist gold,87 netCe6,88 exon augustusGene,86 blastCe6SG,61 blastCe6SG,72 blastCe6SG,108 blastCe6SG,121 exons blastCe6SG,89 expansions simpleRepeat,48 expense intronEst,103 experimentally uniprot,304 explanation gc5Base,66 quality,80 explored spMut,316 uniprot,1716 expressed est,20 est,194 intronEst,21 intronEst,269 mrna,140 xenoMrna,214 extended blastCe6SG,124 extending blastCe6SG,110 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extracted ctgPos2,23 f chainCe6,507 tRNAs,473 xenoRefGene,327 facilitate uniprot,1852 factor est,231 intronEst,306 mrna,177 xenoMrna,251 false tRNAs,87 famiglietti spMut,496 uniprot,2018 families uniprot,1395 faq augustusGene,45 spMut,442 uniprot,1839 far uniprot,599 farrell xenoRefGene,332 feature chainCe6,200 est,378 intronEst,453 mrna,324 uniprot,64 uniprot,524 uniprot,613 xenoMrna,398 xenoRefGene,147 xenoRefGene,180 features spMut,407 tRNAs,185 tRNAs,218 tRNAs,238 tRNAs,276 uniprot,694 uniprot,1805 xenoRefGene,83 fed chainCe6,338 feedback uniprot,1445 uniprot,1961 fewer tRNAs,91 ffer chainCe6,460 chainCe6,570 windowmaskerSdust,96 fichant tRNAs,32 tRNAs,417 field augustusGene,120 file ctgPos2,26 spMut,263 spMut,337 spMut,349 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files uniprot,1863 fill netCe6,337 netCe6,370 filled netCe6,97 netCe6,116 netCe6,319 netCe6,392 filter chainCe6,283 est,119 est,168 est,181 est,190 est,237 est,267 est,291 est,309 est,347 est,365 intronEst,194 intronEst,243 intronEst,256 intronEst,265 intronEst,312 intronEst,342 intronEst,366 intronEst,384 intronEst,422 intronEst,440 mrna,65 mrna,114 mrna,127 mrna,136 mrna,183 mrna,213 mrna,237 mrna,255 mrna,293 mrna,311 uniprot,187 uniprot,664 xenoMrna,139 xenoMrna,188 xenoMrna,201 xenoMrna,210 xenoMrna,257 xenoMrna,287 xenoMrna,311 xenoMrna,329 xenoMrna,367 xenoMrna,385 filtered est,330 intronEst,405 mrna,276 uniprot,1480 uniprot,1499 xenoMrna,350 filtering est,269 intronEst,344 mrna,215 uniprot,693 uniprot,912 uniprot,1154 xenoMrna,289 filters tRNAs,55 final uniprot,1153 finally blastCe6SG,84 find chainCe6,383 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 netCe6,37 finger uniprot,327 first blastCe6SG,37 netCe6,277 spMut,245 uniprot,70 xenoMrna,72 fish augustusGene,201 fit netCe6,297 fix uniprot,851 fly augustusGene,214 fold tRNAs,308 following chainCe6,392 gap,67 tRNAs,364 windowmaskerSdust,56 follows est,52 intronEst,130 mrna,33 xenoMrna,37 xenoRefGene,49 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 blastCe6SG,154 chainCe6,213 chainCe6,577 est,56 est,114 est,185 est,216 est,238 est,400 est,411 est,451 gc5Base,64 intronEst,110 intronEst,134 intronEst,189 intronEst,260 intronEst,291 intronEst,313 intronEst,475 intronEst,486 intronEst,526 microsat,95 mrna,37 mrna,60 mrna,131 mrna,162 mrna,184 mrna,337 mrna,350 netCe6,25 netCe6,36 netCe6,41 netCe6,174 quality,78 simpleRepeat,30 simpleRepeat,56 spMut,17 spMut,68 spMut,71 spMut,183 spMut,326 spMut,350 spMut,384 spMut,388 spMut,412 spMut,436 spMut,443 spMut,512 tRNAs,100 tRNAs,230 tRNAs,447 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoMrna,41 xenoMrna,64 xenoMrna,134 xenoMrna,205 xenoMrna,236 xenoMrna,258 xenoMrna,411 xenoMrna,424 xenoRefGene,20 xenoRefGene,53 xenoRefGene,175 form uniprot,1665 format chainCe6,329 formats uniprot,885 uniprot,1865 forth netCe6,123 found augustusGene,100 mrna,384 spMut,396 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 xenoMrna,457 four netCe6,191 xenoMrna,119 fragment ctgPos2,17 gap,72 gap,125 gold,133 fragments est,42 gap,32 gold,4 intronEst,53 free uniprot,1435 from augustusGene,19 blastCe6SG,24 blastCe6SG,41 chainCe6,135 chainCe6,301 chainCe6,439 chainCe6,482 ctgPos2,15 ctgPos2,24 est,396 est,423 est,444 est,554 est,572 est,617 est,700 gap,131 gold,3 intronEst,471 intronEst,498 intronEst,519 intronEst,629 intronEst,647 intronEst,692 intronEst,778 mrna,7 mrna,417 netCe6,54 netCe6,243 netCe6,254 netCe6,441 spMut,99 spMut,259 spMut,342 spMut,374 spMut,456 tRNAs,130 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoMrna,6 xenoMrna,25 xenoMrna,491 xenoRefGene,27 xenoRefGene,167 xenoRefGene,287 ftp windowmaskerSdust,44 full chainCe6,195 netCe6,67 spMut,184 uniprot,486 uniprot,528 uniprot,540 function tRNAs,154 functional tRNAs,145 tRNAs,172 tRNAs,221 furthermore augustusGene,64 g gc5Base,20 microsat,115 simpleRepeat,75 tRNAs,477 g-31-125100-114 chainCe6,400 ga tRNAs,418 gambiae augustusGene,219 gap blastCe6SG,96 blastCe6SG,103 chainCe6,34 chainCe6,44 chainCe6,147 gap,1 gap,2 gap,38 gap,49 gap,62 gap,126 gold,44 netCe6,160 netCe6,172 netCe6,195 netCe6,213 netCe6,228 netCe6,245 netCe6,321 gapless chainCe6,367 gaps chainCe6,40 chainCe6,51 chainCe6,64 chainCe6,98 chainCe6,124 chainCe6,170 chainCe6,181 gap,11 gap,15 gap,71 gap,73 gap,140 gold,86 gold,265 gold,283 netCe6,87 netCe6,109 netCe6,136 netCe6,376 netCe6,382 gary microsat,111 simpleRepeat,71 gasteiger spMut,498 uniprot,2020 gattiker spMut,494 uniprot,2016 gbdb spMut,417 uniprot,1815 gc gc5Base,1 gc5Base,3 gc5Base,13 gc5Base,30 genbank est,25 est,618 est,725 intronEst,26 intronEst,693 intronEst,803 mrna,8 mrna,23 mrna,355 mrna,442 uniprot,376 xenoMrna,7 xenoMrna,24 xenoMrna,516 gencode uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 blastCe6SG,13 blastCe6SG,27 tRNAs,11 tRNAs,141 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,9 xenoRefGene,54 xenoRefGene,108 xenoRefGene,123 xenoRefGene,128 xenoRefGene,156 xenoRefGene,185 gene-rich gc5Base,36 genedx uniprot,1973 general est,500 intronEst,575 generally uniprot,248 generate est,611 intronEst,686 generated chainCe6,498 xenoRefGene,291 generating augustusGene,189 genes augustusGene,8 augustusGene,44 blastCe6SG,11 blastCe6SG,46 est,45 intronEst,56 simpleRepeat,41 tRNAs,2 tRNAs,5 tRNAs,9 tRNAs,18 tRNAs,174 tRNAs,244 tRNAs,286 tRNAs,304 tRNAs,376 tRNAs,424 tRNAs,453 tRNAs,485 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,6 xenoRefGene,7 xenoRefGene,19 xenoRefGene,194 xenoRefGene,202 xenoRefGene,213 genetic spMut,27 spMut,58 genetics spMut,30 genome augustusGene,31 blastCe6SG,54 chainCe6,31 chainCe6,165 chainCe6,448 chainCe6,609 ctgPos2,31 ctgPos2,47 est,28 est,623 est,748 gap,77 gap,108 gold,19 gold,139 gold,145 gold,250 intronEst,29 intronEst,39 intronEst,698 intronEst,826 mrna,26 mrna,363 mrna,465 netCe6,32 netCe6,43 netCe6,275 netCe6,522 spMut,42 spMut,251 spMut,271 spMut,330 spMut,361 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoMrna,437 xenoMrna,539 xenoRefGene,226 xenoRefGene,309 genome.bed uniprot,1935 uniprot,1937 genomes chainCe6,306 chainCe6,546 chainCe6,579 netCe6,484 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,378 genomic chainCe6,514 est,91 est,398 est,578 est,689 intronEst,166 intronEst,473 intronEst,653 intronEst,764 mrna,335 mrna,405 netCe6,179 spMut,80 spMut,110 tRNAs,108 tRNAs,379 tRNAs,426 tRNAs,455 tRNAs,487 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoMrna,102 xenoMrna,409 xenoMrna,479 xenoRefGene,164 xenoRefGene,276 genomics chainCe6,13 netCe6,13 genuine intronEst,107 gertz chainCe6,456 chainCe6,566 windowmaskerSdust,92 gigabases tRNAs,96 gish blastCe6SG,162 github uniprot,1559 give xenoMrna,112 given spMut,125 spMut,410 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go est,406 intronEst,481 mrna,343 uniprot,1412 xenoMrna,417 xenoRefGene,181 gold gold,81 gold,95 goldenpath uniprot,1907 gr xenoRefGene,323 graph gc5Base,59 gc5Base,78 quality,74 graphical gold,120 netCe6,126 quality,102 green spMut,176 uniprot,588 uniprot,593 grey tRNAs,206 group augustusGene,198 augustusGene,235 chainCe6,359 uniprot,430 grouped gold,31 groups augustusGene,194 gt intronEst,84 tRNAs,165 uniprot,907 uniprot,909 uniprot,1930 gtrnadb tRNAs,111 tRNAs,332 tRNAs,370 guanine gc5Base,21 guess tRNAs,256 guides tRNAs,261 h spMut,491 uniprot,2013 haeussler spMut,453 uniprot,1945 half gold,196 gold,244 handful uniprot,1180 haplotype uniprot,852 hardison chainCe6,441 chainCe6,599 netCe6,443 netCe6,512 hart xenoRefGene,334 has est,117 gold,146 intronEst,83 intronEst,192 mrna,63 spMut,96 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoMrna,137 xenoRefGene,68 haussler augustusGene,292 chainCe6,487 chainCe6,532 chainCe6,601 netCe6,470 netCe6,514 have chainCe6,289 gold,203 intronEst,7 tRNAs,181 tRNAs,214 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having est,662 est,671 intronEst,737 intronEst,746 mrna,378 mrna,387 xenoMrna,451 xenoMrna,461 xenoRefGene,249 xenoRefGene,258 heavily spMut,283 uniprot,1533 height quality,28 heights quality,49 helices uniprot,366 help gc5Base,61 quality,76 helpful est,145 intronEst,220 mrna,91 xenoMrna,165 hence xenoMrna,91 here spMut,397 uniprot,1795 xenoMrna,86 hg spMut,306 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu spMut,416 uniprot,1814 uniprot,1906 uniprot,1916 hiatt xenoRefGene,324 hidden augustusGene,324 uniprot,182 uniprot,223 hide uniprot,659 uniprot,667 xenoRefGene,192 hierarchy netCe6,312 high gc5Base,29 higher netCe6,344 higher-level netCe6,361 higher-scoring netCe6,305 netCe6,324 highest est,664 intronEst,739 mrna,380 uniprot,948 uniprot,1113 xenoMrna,453 xenoRefGene,251 highest-scoring netCe6,78 netCe6,271 highlight est,325 gc5Base,49 intronEst,400 mrna,271 quality,65 xenoMrna,345 highlighted est,295 est,313 intronEst,370 intronEst,388 mrna,241 mrna,259 uniprot,580 xenoMrna,315 xenoMrna,333 highly microsat,40 tRNAs,69 hinrichs chainCe6,528 netCe6,466 hiram blastCe6SG,206 gc5Base,82 quality,108 honeybee1 augustusGene,217 hou chainCe6,429 netCe6,431 how netCe6,372 netCe6,389 http spMut,415 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hum spMut,521 uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainCe6,545 netCe6,483 spMut,518 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainCe6,605 netCe6,518 hybridizes est,468 intronEst,543 i est,718 intronEst,796 mrna,435 xenoMrna,509 i.e intronEst,72 tRNAs,148 id uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identification tRNAs,480 identified est,668 intronEst,743 tRNAs,6 xenoRefGene,255 identifying tRNAs,421 identity est,666 est,674 est,686 intronEst,741 intronEst,749 intronEst,761 microsat,71 mrna,382 mrna,390 mrna,402 xenoMrna,455 xenoMrna,464 xenoMrna,476 xenoRefGene,253 xenoRefGene,261 xenoRefGene,273 ids uniprot,1292 if est,268 est,280 est,296 est,332 est,349 gap,24 intronEst,343 intronEst,355 intronEst,371 intronEst,407 intronEst,424 mrna,214 mrna,226 mrna,242 mrna,278 mrna,295 spMut,128 spMut,139 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoMrna,288 xenoMrna,300 xenoMrna,316 xenoMrna,352 xenoMrna,369 xenoRefGene,205 ignored uniprot,1426 ii215-25 augustusGene,338 images tRNAs,319 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 improved tRNAs,448 in augustusGene,101 chainCe6,52 chainCe6,74 chainCe6,106 chainCe6,114 chainCe6,129 chainCe6,148 chainCe6,151 chainCe6,191 chainCe6,208 chainCe6,237 chainCe6,267 chainCe6,279 chainCe6,321 chainCe6,416 chainCe6,446 chainCe6,541 ctgPos2,38 est,24 est,37 est,60 est,151 est,172 est,195 est,205 est,223 est,265 est,387 est,499 est,547 est,657 gap,12 gap,21 gap,83 gap,122 gc5Base,5 gc5Base,26 gc5Base,43 gold,57 gold,118 gold,162 intronEst,25 intronEst,48 intronEst,80 intronEst,94 intronEst,138 intronEst,226 intronEst,247 intronEst,270 intronEst,280 intronEst,298 intronEst,340 intronEst,462 intronEst,574 intronEst,622 intronEst,732 intronEst,768 microsat,42 microsat,49 mrna,22 mrna,41 mrna,97 mrna,118 mrna,141 mrna,151 mrna,169 mrna,211 mrna,373 netCe6,50 netCe6,66 netCe6,84 netCe6,89 netCe6,98 netCe6,110 netCe6,124 netCe6,166 netCe6,183 netCe6,214 netCe6,232 netCe6,246 netCe6,273 netCe6,314 netCe6,322 netCe6,338 netCe6,371 netCe6,383 netCe6,479 quality,24 quality,59 spMut,36 spMut,89 spMut,161 spMut,220 spMut,304 spMut,334 tRNAs,155 tRNAs,158 tRNAs,194 tRNAs,203 tRNAs,222 tRNAs,240 tRNAs,249 tRNAs,378 tRNAs,425 tRNAs,454 tRNAs,486 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoMrna,23 xenoMrna,45 xenoMrna,68 xenoMrna,171 xenoMrna,192 xenoMrna,215 xenoMrna,225 xenoMrna,243 xenoMrna,285 xenoMrna,446 xenoRefGene,244 include est,133 est,327 est,351 intronEst,208 intronEst,402 intronEst,426 mrna,79 mrna,273 mrna,297 xenoMrna,153 xenoMrna,347 xenoMrna,371 included augustusGene,160 blastCe6SG,120 blastCe6SG,143 windowmaskerSdust,26 includes uniprot,1587 including est,7 intronEst,116 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainCe6,97 chainCe6,202 est,71 mrna,52 tRNAs,137 tRNAs,187 xenoMrna,56 indicates est,79 intronEst,144 intronEst,154 quality,35 xenoMrna,73 xenoMrna,95 xenoRefGene,60 individual chainCe6,199 netCe6,181 spMut,356 information augustusGene,36 blastCe6SG,156 est,78 est,402 gc5Base,55 intronEst,153 intronEst,477 microsat,97 mrna,339 netCe6,144 netCe6,157 netCe6,163 netCe6,339 quality,71 simpleRepeat,58 spMut,52 spMut,185 spMut,445 spMut,516 uniprot,678 uniprot,1842 uniprot,2038 xenoMrna,63 xenoMrna,413 xenoRefGene,177 initial tRNAs,47 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 inserted chainCe6,291 netCe6,395 insertion chainCe6,113 inside uniprot,560 inspected tRNAs,228 inspection uniprot,1653 instead xenoRefGene,120 instructions spMut,387 uniprot,1785 integrated tRNAs,27 integrator spMut,325 uniprot,1725 intended spMut,16 interactions uniprot,316 interactively spMut,317 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 international est,707 intronEst,785 mrna,424 xenoMrna,498 intervals windowmaskerSdust,4 into chainCe6,327 chainCe6,339 chainCe6,357 est,255 est,428 est,435 est,580 gold,25 gold,32 gold,206 intronEst,330 intronEst,503 intronEst,510 intronEst,655 mrna,201 netCe6,298 tRNAs,309 uniprot,57 windowmaskerSdust,80 xenoMrna,275 intron augustusGene,88 augustusGene,330 est,630 intronEst,71 intronEst,705 introns est,647 intronEst,722 inv netCe6,219 inversions chainCe6,70 chainCe6,136 invertebrate xenoMrna,21 inverted netCe6,357 involve chainCe6,126 involved tRNAs,193 is blastCe6SG,146 est,284 est,300 est,336 est,353 est,421 est,433 est,442 est,462 est,591 est,635 gap,39 gap,46 gap,54 gap,88 gap,97 gc5Base,32 gold,110 gold,116 gold,176 gold,225 gold,272 intronEst,75 intronEst,98 intronEst,359 intronEst,375 intronEst,411 intronEst,428 intronEst,496 intronEst,508 intronEst,517 intronEst,537 intronEst,666 intronEst,710 microsat,88 mrna,230 mrna,246 mrna,282 mrna,299 netCe6,34 netCe6,53 netCe6,164 simpleRepeat,28 spMut,15 spMut,45 spMut,137 spMut,141 spMut,151 spMut,294 spMut,302 spMut,332 spMut,353 tRNAs,25 tRNAs,125 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 xenoMrna,67 xenoMrna,121 xenoMrna,127 xenoMrna,304 xenoMrna,320 xenoMrna,356 xenoMrna,373 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,422 intronEst,497 isotype tRNAs,248 issue est,735 intronEst,813 mrna,452 spMut,482 tRNAs,388 uniprot,2004 xenoMrna,526 xenoRefGene,356 xenoRefGene,390 it chainCe6,47 est,93 est,107 est,484 gap,45 intronEst,168 intronEst,182 intronEst,559 netCe6,33 netCe6,218 netCe6,230 uniprot,228 uniprot,625 uniprot,1586 item xenoRefGene,77 items est,65 est,138 est,148 est,331 intronEst,213 intronEst,223 intronEst,406 mrna,46 mrna,84 mrna,94 mrna,277 netCe6,182 xenoMrna,50 xenoMrna,158 xenoMrna,168 xenoMrna,351 xenoRefGene,104 its uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j blastCe6SG,175 est,722 intronEst,800 mrna,439 tRNAs,429 xenoMrna,513 xenoRefGene,335 jan chainCe6,582 chainCe6,612 est,731 intronEst,809 microsat,129 mrna,448 netCe6,525 simpleRepeat,89 spMut,479 tRNAs,385 uniprot,2001 windowmaskerSdust,108 xenoMrna,522 xenoRefGene,353 xenoRefGene,386 japonica blastCe6SG,78 blastCe6SG,88 chainCe6,30 chainCe6,58 chainCe6,117 chainCe6,164 chainCe6,297 chainCe6,355 est,2 est,5 est,19 est,615 gold,18 intronEst,4 intronEst,20 intronEst,121 intronEst,690 mrna,2 mrna,5 mrna,20 mrna,357 netCe6,23 netCe6,31 quality,4 quality,96 xenoMrna,4 xenoMrna,30 xenoMrna,436 xenoRefGene,4 xenoRefGene,25 xenoRefGene,225 jim blastCe6SG,188 blastCe6SG,201 chainCe6,478 chainCe6,503 netCe6,420 netCe6,459 joined chainCe6,82 jun tRNAs,408 k augustusGene,268 karsch-mizrachi est,717 intronEst,795 mrna,434 xenoMrna,508 kd xenoRefGene,321 xenoRefGene,363 kd-tree chainCe6,363 kd-trees chainCe6,381 keep uniprot,1486 kent blastCe6SG,189 blastCe6SG,202 chainCe6,479 chainCe6,504 chainCe6,524 chainCe6,591 est,741 intronEst,819 mrna,458 netCe6,421 netCe6,460 netCe6,462 netCe6,504 spMut,298 xenoMrna,532 xenoRefGene,303 kept est,692 mrna,408 xenoMrna,482 xenoRefGene,279 km xenoRefGene,339 known gold,35 gold,112 spMut,129 xenoRefGene,15 lab augustusGene,252 tRNAs,338 label xenoRefGene,101 xenoRefGene,113 xenoRefGene,136 labeled spMut,117 uniprot,457 xenoRefGene,106 labeling est,376 intronEst,451 labels xenoRefGene,78 landrum xenoRefGene,336 large quality,46 largely chainCe6,101 larger gold,194 gold,242 intronEst,146 largest netCe6,77 lavtopsl chainCe6,332 least blastCe6SG,133 est,683 intronEst,68 intronEst,77 intronEst,758 microsat,29 microsat,78 mrna,399 xenoMrna,473 xenoRefGene,270 lee uniprot,1955 length augustusGene,82 est,38 est,631 intronEst,49 intronEst,81 intronEst,706 less uniprot,680 xenoRefGene,234 level est,675 intronEst,91 intronEst,750 mrna,391 netCe6,72 netCe6,106 netCe6,111 netCe6,118 netCe6,176 netCe6,203 netCe6,216 netCe6,248 xenoMrna,465 xenoRefGene,62 xenoRefGene,262 libraries est,528 intronEst,603 lifted spMut,249 uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,71 light-blue uniprot,178 like uniprot,1541 likely augustusGene,111 microsat,17 tRNAs,126 tRNAs,169 line gap,53 gold,115 netCe6,154 uniprot,1872 uniprot,1876 line-up netCe6,221 line-ups netCe6,206 lines chainCe6,89 chainCe6,96 chainCe6,120 netCe6,134 link gc5Base,63 quality,77 uniprot,491 uniprot,1675 linked spMut,155 linkout spMut,196 spMut,202 spMut,216 linux.x86_64 uniprot,1919 lipid uniprot,346 lipman blastCe6SG,168 est,719 intronEst,797 mrna,436 xenoMrna,510 lipoification uniprot,577 list est,212 intronEst,287 mrna,158 spMut,434 tRNAs,48 uniprot,979 uniprot,1165 uniprot,1831 xenoMrna,232 lists spMut,203 spMut,217 literature uniprot,434 lm spMut,497 uniprot,2019 loaded windowmaskerSdust,79 local blastCe6SG,171 chainCe6,69 chainCe6,142 located simpleRepeat,21 spMut,303 location chainCe6,207 spMut,147 uniprot,554 uniprot,767 uniprot,1417 locations ctgPos2,21 gap,3 spMut,111 uniprot,451 logic est,279 intronEst,354 mrna,225 xenoMrna,299 long est,646 intronEst,721 longer chainCe6,39 tRNAs,192 longest netCe6,199 loss tRNAs,231 lot uniprot,1950 louis ctgPos2,40 low tRNAs,293 lowe tRNAs,337 tRNAs,368 tRNAs,440 lower netCe6,175 lower-level netCe6,346 netCe6,352 ls-snp spMut,286 uniprot,1536 m augustusGene,287 augustusGene,289 augustusGene,317 made netCe6,454 uniprot,931 uniprot,938 maglott xenoRefGene,366 mailing spMut,433 uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained tRNAs,334 uniprot,719 make blastCe6SG,69 est,417 est,483 gold,66 intronEst,492 intronEst,558 tRNAs,252 uniprot,1406 making tRNAs,356 uniprot,1978 mammalian xenoRefGene,346 manner uniprot,1469 manual uniprot,1652 many est,147 intronEst,106 intronEst,222 mrna,93 netCe6,85 uniprot,932 uniprot,1124 xenoMrna,167 map chainCe6,235 uniprot,758 uniprot,1885 mapped augustusGene,298 blastCe6SG,7 spMut,268 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping ctgPos2,4 gap,4 gc5Base,8 gold,5 quality,8 spMut,280 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings uniprot,1362 mar augustusGene,309 tRNAs,461 mario augustusGene,102 augustusGene,283 mark est,504 intronEst,579 spMut,289 spMut,457 uniprot,1539 uniprot,1956 marked chainCe6,445 tRNAs,287 markers microsat,23 markov augustusGene,325 masked windowmaskerSdust,5 windowmaskerSdust,16 masker chainCe6,576 windowmaskerSdust,102 masking chainCe6,313 match chainCe6,212 est,84 est,289 est,304 est,345 est,363 intronEst,159 intronEst,364 intronEst,379 intronEst,420 intronEst,438 mrna,235 mrna,250 mrna,291 mrna,309 netCe6,200 netCe6,238 uniprot,1305 uniprot,1341 xenoMrna,85 xenoMrna,309 xenoMrna,324 xenoMrna,365 xenoMrna,383 matched blastCe6SG,131 matches est,72 mrna,53 xenoMrna,57 matching chainCe6,215 est,90 intronEst,165 uniprot,1068 uniprot,1075 xenoMrna,100 matrix chainCe6,393 tRNAs,494 mature est,474 intronEst,549 unipChain,3 uniprot,251 uniprot,292 maximally chainCe6,385 maximilian spMut,452 uniprot,1944 maximum blastCe6SG,95 est,629 intronEst,704 maxtracks augustusGene,139 may chainCe6,6 chainCe6,23 chainCe6,133 est,143 est,261 est,369 est,479 est,481 est,493 est,495 est,515 est,640 gc5Base,40 intronEst,218 intronEst,336 intronEst,444 intronEst,554 intronEst,556 intronEst,568 intronEst,570 intronEst,590 intronEst,715 mrna,89 mrna,207 mrna,315 netCe6,6 netCe6,56 netCe6,114 quality,56 simpleRepeat,43 spMut,524 tRNAs,210 tRNAs,212 tRNAs,325 uniprot,2046 xenoMrna,163 xenoMrna,281 xenoMrna,389 mcgarvey xenoRefGene,338 md5 uniprot,1601 mdash est,453 est,457 intronEst,528 intronEst,532 mean gold,171 gold,220 tRNAs,117 measurement gold,183 gold,232 mediating uniprot,314 medical spMut,56 medicine ctgPos2,44 spMut,39 medium xenoRefGene,73 mellifera augustusGene,216 menu xenoRefGene,174 method uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 blastCe6SG,36 chainCe6,286 ctgPos2,19 est,415 intronEst,490 microsat,45 mrna,354 netCe6,250 netCe6,259 simpleRepeat,55 spMut,237 uniprot,777 windowmaskerSdust,46 xenoMrna,428 xenoRefGene,217 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,108 est,649 intronEst,183 intronEst,724 miller blastCe6SG,164 chainCe6,436 chainCe6,484 chainCe6,510 chainCe6,530 chainCe6,603 netCe6,438 netCe6,468 netCe6,516 minexonintronprob augustusGene,135 minmeanexonintronprob augustusGene,137 minmei chainCe6,428 netCe6,430 misplacements uniprot,853 mj xenoRefGene,337 mk_counts windowmaskerSdust,59 mode est,63 est,128 gold,59 intronEst,141 intronEst,203 mrna,44 mrna,74 netCe6,69 xenoMrna,48 xenoMrna,148 model augustusGene,121 augustusGene,326 model-based tRNAs,61 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 tRNAs,403 uniprot,733 modes chainCe6,197 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified uniprot,343 modsnp spMut,508 uniprot,2030 moiety-binding uniprot,347 mol blastCe6SG,176 tRNAs,430 molecule tRNAs,147 months uniprot,1573 more augustusGene,35 blastCe6SG,112 blastCe6SG,155 chainCe6,122 chainCe6,183 est,68 est,175 est,271 est,401 intronEst,250 intronEst,346 intronEst,476 microsat,96 mrna,49 mrna,121 mrna,217 mrna,338 simpleRepeat,57 spMut,444 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoMrna,53 xenoMrna,195 xenoMrna,291 xenoMrna,412 xenoRefGene,176 morgulis chainCe6,454 chainCe6,564 windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,452 intronEst,527 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly tRNAs,298 uniprot,1365 motif tRNAs,38 motifs uniprot,388 mouse chainCe6,543 netCe6,481 spMut,163 uniprot,521 uniprot,535 mrna est,9 est,475 est,491 est,574 intronEst,10 intronEst,550 intronEst,566 intronEst,649 mrna,9 mrna,14 mrna,129 mrna,371 mrna,411 mrna,418 xenoMrna,8 xenoMrna,22 xenoMrna,203 xenoMrna,444 xenoMrna,485 xenoMrna,492 mrnas mrna,3 mrna,6 mrna,21 mrna,139 mrna,233 mrna,248 mrna,289 mrna,307 mrna,332 mrna,358 xenoMrna,2 xenoMrna,5 xenoMrna,213 xenoMrna,307 xenoMrna,322 xenoMrna,363 xenoMrna,381 xenoMrna,406 xenoMrna,430 much netCe6,373 netCe6,390 mujica uniprot,1967 multiple chainCe6,154 est,658 intronEst,733 mrna,374 uniprot,58 uniprot,1067 uniprot,1095 xenoMrna,447 xenoRefGene,245 multistep tRNAs,492 must intronEst,63 mutagenesis uniprot,353 mutat spMut,522 uniprot,2044 mutated uniprot,618 mutation chainCe6,143 spMut,166 mutation-related uniprot,408 mutations spMut,173 unipMut,1 unipMut,5 uniprot,352 myers blastCe6SG,166 n50 gold,182 gold,231 name chainCe6,273 est,201 intronEst,276 mrna,147 spMut,133 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoMrna,221 xenoRefGene,109 xenoRefGene,119 xenoRefGene,124 named gold,210 names chainCe6,201 xenoRefGene,131 native augustusGene,295 natl chainCe6,548 netCe6,486 natural netCe6,311 spMut,83 naturally-occurring spMut,178 naview tRNAs,348 nbci uniprot,822 nbsp chainCe6,396 ncbi blastCe6SG,150 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,29 xenoRefGene,299 xenoRefGene,368 necessary netCe6,295 nematodes augustusGene,211 net netCe6,3 netCe6,11 netclass netCe6,365 netCe6,408 nets netCe6,452 netsyntenic netCe6,333 netCe6,406 new augustusGene,329 tRNAs,482 newer est,526 intronEst,601 next blastCe6SG,63 chainCe6,252 chainCe6,281 nig augustusGene,270 no blastCe6SG,102 est,95 intronEst,170 microsat,73 spMut,142 tRNAs,191 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 non-c xenoMrna,3 xenoRefGene,3 non-coding augustusGene,75 xenoRefGene,193 non-mrna est,595 intronEst,670 non-protein-coding xenoRefGene,18 xenoRefGene,201 non-redundant xenoRefGene,374 nonsyn netCe6,236 nor tRNAs,265 xenoMrna,126 not est,341 est,455 est,482 est,496 intronEst,416 intronEst,530 intronEst,557 intronEst,571 mrna,287 netCe6,300 tRNAs,136 tRNAs,153 tRNAs,213 tRNAs,263 tRNAs,306 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 xenoMrna,122 xenoMrna,361 note est,626 intronEst,701 spMut,12 tRNAs,283 uniprot,695 novo augustusGene,304 now uniprot,1680 ns gap,121 netCe6,380 nucleic est,727 intronEst,805 microsat,125 mrna,444 simpleRepeat,85 spMut,475 tRNAs,381 tRNAs,404 tRNAs,457 tRNAs,500 uniprot,1997 xenoMrna,518 xenoRefGene,349 xenoRefGene,382 nucleotides gold,169 gold,218 number augustusGene,153 intronEst,147 numbers gap,119 o xenoRefGene,331 observed uniprot,1114 obtain spMut,405 tRNAs,45 tRNAs,67 uniprot,1803 obtained augustusGene,126 spMut,365 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 blastCe6SG,179 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 blastCe6SG,21 blastCe6SG,98 blastCe6SG,115 blastCe6SG,127 blastCe6SG,135 blastCe6SG,148 chainCe6,19 chainCe6,141 chainCe6,161 chainCe6,210 chainCe6,264 chainCe6,274 chainCe6,365 chainCe6,370 chainCe6,388 chainCe6,407 chainCe6,472 chainCe6,494 ctgPos2,43 est,43 est,73 est,82 est,100 est,102 est,137 est,176 est,202 est,213 est,249 est,307 est,473 est,489 est,507 est,524 est,586 est,594 est,598 est,678 gap,30 gap,36 gap,70 gap,80 gap,91 gap,100 gap,120 gc5Base,19 gc5Base,46 gc5Base,52 gc5Base,67 gc5Base,76 gold,15 gold,79 gold,104 gold,132 gold,173 gold,184 gold,188 gold,197 gold,222 gold,233 gold,236 gold,245 intronEst,33 intronEst,54 intronEst,66 intronEst,92 intronEst,104 intronEst,113 intronEst,148 intronEst,157 intronEst,175 intronEst,177 intronEst,212 intronEst,251 intronEst,277 intronEst,288 intronEst,324 intronEst,382 intronEst,548 intronEst,564 intronEst,582 intronEst,599 intronEst,661 intronEst,669 intronEst,673 intronEst,753 microsat,27 microsat,55 microsat,64 microsat,81 mrna,54 mrna,83 mrna,122 mrna,148 mrna,159 mrna,195 mrna,253 mrna,394 netCe6,28 netCe6,170 netCe6,190 netCe6,374 netCe6,415 netCe6,450 quality,21 quality,32 quality,38 quality,62 quality,68 quality,81 quality,93 simpleRepeat,40 spMut,82 spMut,112 spMut,206 spMut,296 tRNAs,49 tRNAs,72 tRNAs,82 tRNAs,90 tRNAs,164 tRNAs,232 tRNAs,245 tRNAs,273 tRNAs,320 tRNAs,358 tRNAs,373 tRNAs,450 tRNAs,481 tRNAs,496 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoMrna,18 xenoMrna,58 xenoMrna,76 xenoMrna,98 xenoMrna,108 xenoMrna,157 xenoMrna,196 xenoMrna,222 xenoMrna,233 xenoMrna,269 xenoMrna,327 xenoMrna,468 xenoRefGene,63 xenoRefGene,82 xenoRefGene,96 xenoRefGene,121 xenoRefGene,233 xenoRefGene,265 xenoRefGene,377 off chainCe6,243 chainCe6,249 xenoRefGene,134 often chainCe6,172 chainCe6,184 older uniprot,1560 uniprot,1647 oligo-dt est,466 intronEst,541 on augustusGene,29 augustusGene,37 augustusGene,151 blastCe6SG,29 blastCe6SG,157 chainCe6,231 chainCe6,257 est,232 est,270 gap,33 gold,53 intronEst,307 intronEst,345 mrna,178 mrna,216 netCe6,138 netCe6,152 netCe6,202 netCe6,207 netCe6,222 netCe6,261 spMut,284 spMut,517 tRNAs,269 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoMrna,252 xenoMrna,290 xenoRefGene,345 once uniprot,647 one augustusGene,169 chainCe6,149 chainCe6,265 est,173 est,273 est,306 intronEst,69 intronEst,73 intronEst,248 intronEst,348 intronEst,381 mrna,119 mrna,219 mrna,252 netCe6,189 netCe6,288 netCe6,384 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 xenoMrna,193 xenoMrna,293 xenoMrna,326 ones uniprot,1041 ongoing uniprot,1569 only chainCe6,261 est,157 est,286 est,359 est,392 est,669 intronEst,232 intronEst,361 intronEst,434 intronEst,467 intronEst,744 microsat,61 mrna,103 mrna,232 mrna,305 mrna,385 spMut,157 spMut,406 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoMrna,177 xenoMrna,306 xenoMrna,379 xenoMrna,458 xenoRefGene,210 xenoRefGene,256 open spMut,46 opposite netCe6,234 option augustusGene,167 augustusGene,187 est,405 intronEst,480 mrna,342 xenoMrna,416 xenoRefGene,114 xenoRefGene,166 optional xenoRefGene,144 options gc5Base,70 quality,84 or chainCe6,87 chainCe6,111 chainCe6,144 est,174 est,298 est,317 est,326 est,391 est,448 est,480 est,494 gold,193 gold,241 intronEst,249 intronEst,373 intronEst,392 intronEst,401 intronEst,466 intronEst,523 intronEst,555 intronEst,569 mrna,120 mrna,244 mrna,263 mrna,272 netCe6,173 netCe6,356 netCe6,385 spMut,57 spMut,322 spMut,358 spMut,378 spMut,438 tRNAs,183 tRNAs,211 tRNAs,235 tRNAs,300 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoMrna,94 xenoMrna,194 xenoMrna,318 xenoMrna,337 xenoMrna,346 xenoRefGene,132 order gap,27 gold,41 gold,101 tRNAs,250 uniprot,872 ordered gap,102 organ est,198 est,204 intronEst,273 intronEst,279 mrna,144 mrna,150 xenoMrna,218 xenoMrna,224 organism chainCe6,240 chainCe6,270 organisms netCe6,401 uniprot,998 xenoMrna,26 xenoRefGene,21 organizes chainCe6,342 orientation gap,29 gold,42 gold,103 netCe6,235 xenoMrna,75 xenoMrna,97 orientations xenoMrna,107 oriented gap,104 originally spMut,223 orthologous netCe6,38 ostell est,721 intronEst,799 mrna,438 xenoMrna,512 other augustusGene,208 netCe6,100 netCe6,193 spMut,23 tRNAs,243 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoMrna,1 xenoMrna,27 xenoRefGene,1 xenoRefGene,22 others uniprot,1312 uniprot,1344 otherwise est,650 intronEst,725 ottonello tRNAs,478 ouml augustusGene,269 our augustusGene,43 spMut,367 spMut,432 spMut,439 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainCe6,364 quality,43 output windowmaskerSdust,63 windowmaskerSdust,72 outside est,585 intronEst,660 uniprot,558 over blastCe6SG,111 blastCe6SG,125 chainCe6,157 chainCe6,379 spMut,164 uniprot,522 uniprot,536 overlapping chainCe6,72 chainCe6,137 gap,92 own uniprot,724 pac chainCe6,517 pack chainCe6,193 page est,113 est,414 gold,156 intronEst,188 intronEst,489 mrna,59 mrna,353 spMut,505 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoMrna,133 xenoMrna,427 xenoRefGene,100 xenoRefGene,191 pages netCe6,266 pair gap,43 gap,133 paired-end gap,112 gold,54 pairwise chainCe6,513 paralogs chainCe6,187 parameters windowmaskerSdust,57 parsed spMut,258 part blastCe6SG,147 netCe6,27 quality,92 spMut,295 particular augustusGene,234 chainCe6,159 spMut,188 spMut,208 uniprot,1019 parts xenoMrna,70 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pavesi tRNAs,41 tRNAs,470 penalty blastCe6SG,104 pennsylvania chainCe6,424 netCe6,426 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides blastCe6SG,23 unipLocSignal,5 uniprot,239 uniprot,512 per tRNAs,94 percent gc5Base,2 gc5Base,4 gc5Base,14 percentage gc5Base,18 perfect microsat,31 perhaps est,576 intronEst,651 period microsat,65 personal spMut,55 spMut,74 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 physician spMut,67 physicians spMut,21 pia uniprot,1971 pick uniprot,1089 pipeline spMut,287 uniprot,1537 pipelines uniprot,1850 place netCe6,285 placed netCe6,327 places est,659 intronEst,734 mrna,375 xenoMrna,448 xenoRefGene,246 plasmid est,437 intronEst,512 please spMut,429 tRNAs,278 tRNAs,282 tRNAs,361 uniprot,685 uniprot,1439 uniprot,1826 pmc chainCe6,562 chainCe6,618 est,739 est,757 intronEst,817 intronEst,835 microsat,136 mrna,456 mrna,474 netCe6,500 netCe6,531 simpleRepeat,96 spMut,486 tRNAs,392 tRNAs,415 tRNAs,468 tRNAs,511 uniprot,2008 xenoMrna,530 xenoMrna,548 xenoRefGene,318 xenoRefGene,360 xenoRefGene,394 pmc146525 tRNAs,469 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,758 intronEst,836 mrna,475 xenoMrna,549 xenoRefGene,319 pmc208784 chainCe6,563 netCe6,501 pmc2686519 tRNAs,393 pmc308124 tRNAs,416 pmc308779 est,740 intronEst,818 mrna,457 xenoMrna,531 pmc3245120 spMut,487 uniprot,2009 pmc3965018 xenoRefGene,361 pmc430961 chainCe6,619 netCe6,532 pmc523650 tRNAs,512 pmc539979 xenoRefGene,395 pmid augustusGene,314 augustusGene,339 chainCe6,522 chainCe6,560 chainCe6,587 chainCe6,616 est,737 est,755 intronEst,815 intronEst,833 microsat,134 mrna,454 mrna,472 netCe6,498 netCe6,529 simpleRepeat,94 spMut,484 spMut,528 tRNAs,390 tRNAs,413 tRNAs,438 tRNAs,466 tRNAs,509 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoMrna,528 xenoMrna,546 xenoRefGene,316 xenoRefGene,358 xenoRefGene,392 point est,519 intronEst,594 poly-a augustusGene,62 est,471 est,545 intronEst,546 intronEst,620 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position quality,31 spMut,126 uniprot,610 positions spMut,81 spMut,252 uniprot,1495 positive tRNAs,88 possible gold,28 netCe6,94 uniprot,601 possibly simpleRepeat,18 post-processing uniprot,295 potential tRNAs,422 pp tRNAs,367 pre-filters tRNAs,43 precompiled spMut,382 uniprot,1780 predicted blastCe6SG,39 tRNAs,19 tRNAs,322 uniprot,48 uniprot,193 xenoMrna,114 xenoRefGene,70 prediction augustusGene,321 xenoRefGene,55 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 blastCe6SG,14 tRNAs,12 tRNAs,78 tRNAs,295 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,10 xenoRefGene,157 xenoRefGene,186 prepared gc5Base,80 uniprot,712 presentation gc5Base,75 previous uniprot,1654 primarily spMut,19 primary tRNAs,73 tRNAs,234 unipStruct,4 uniprot,360 primed est,463 intronEst,538 primer est,450 intronEst,525 priming est,546 intronEst,621 principal gap,68 probably tRNAs,151 tRNAs,189 problem uniprot,1359 uniprot,1389 proc chainCe6,547 netCe6,485 procedure uniprot,990 process gap,110 netCe6,309 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainCe6,175 produce blastCe6SG,195 produced est,697 intronEst,775 mrna,414 xenoMrna,83 xenoMrna,488 xenoRefGene,284 products unipChain,5 professionals spMut,24 program augustusGene,21 augustusGene,257 blastCe6SG,58 blastCe6SG,83 chainCe6,333 chainCe6,375 chainCe6,466 microsat,100 microsat,120 mrna,367 netCe6,279 netCe6,332 netCe6,364 simpleRepeat,62 simpleRepeat,80 spMut,278 tRNAs,28 tRNAs,53 tRNAs,63 tRNAs,446 uniprot,1529 programs netCe6,409 uniprot,1877 project xenoRefGene,301 projected uniprot,800 projects est,540 est,559 est,589 intronEst,615 intronEst,634 intronEst,664 pronounced uniprot,1392 prot blastCe6SG,2 prot.bed uniprot,1931 uniprot,1933 protein blastCe6SG,118 blastCe6SG,137 spMut,150 spMut,209 spMut,467 spMut,472 spMut,519 unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 xenoMrna,82 xenoMrna,115 protein-coding augustusGene,73 xenoRefGene,16 xenoRefGene,199 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins blastCe6SG,5 blastCe6SG,40 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,381 provide uniprot,1860 provided ctgPos2,28 quality,90 tRNAs,318 uniprot,817 provides uniprot,489 providing augustusGene,254 provisional xenoRefGene,72 pruitt xenoRefGene,320 xenoRefGene,362 pseudo tRNAs,290 pseudogenes chainCe6,176 chainCe6,190 tRNAs,299 uniprot,1184 psl chainCe6,328 est,57 intronEst,135 mrna,38 uniprot,1479 xenoMrna,42 pslmap spMut,254 spMut,277 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public est,708 intronEst,786 mrna,425 spMut,49 uniprot,709 xenoMrna,499 publications spMut,101 uniprot,38 pubmed spMut,221 pull-down xenoRefGene,173 purpose simpleRepeat,32 putative blastCe6SG,86 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qualified spMut,66 quality est,75 mrna,56 quality,1 quality,6 quality,13 quality,19 quality,37 quality,87 xenoMrna,60 query blastCe6SG,117 blastCe6SG,129 uniprot,1484 xenoMrna,78 questions spMut,75 spMut,437 uniprot,1834 quickly mrna,330 xenoMrna,404 xenoRefGene,152 quite simpleRepeat,45 quot chainCe6,61 chainCe6,63 chainCe6,248 chainCe6,250 est,241 est,243 est,281 est,283 est,297 est,299 est,333 est,335 est,350 est,352 gc5Base,58 gc5Base,62 gold,37 gold,39 gold,135 gold,137 intronEst,316 intronEst,318 intronEst,356 intronEst,358 intronEst,372 intronEst,374 intronEst,408 intronEst,410 intronEst,425 intronEst,427 mrna,187 mrna,189 mrna,227 mrna,229 mrna,243 mrna,245 mrna,279 mrna,281 mrna,296 mrna,298 spMut,135 spMut,136 spMut,192 spMut,195 spMut,198 spMut,201 spMut,212 spMut,215 tRNAs,205 tRNAs,207 tRNAs,289 tRNAs,291 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 xenoMrna,261 xenoMrna,263 xenoMrna,301 xenoMrna,303 xenoMrna,317 xenoMrna,319 xenoMrna,353 xenoMrna,355 xenoMrna,370 xenoMrna,372 r augustusGene,291 chainCe6,463 chainCe6,527 chainCe6,573 chainCe6,598 chainCe6,600 netCe6,465 netCe6,511 netCe6,513 tRNAs,397 windowmaskerSdust,99 random augustusGene,119 est,542 intronEst,617 random-primed est,588 intronEst,663 raney blastCe6SG,204 spMut,461 uniprot,1960 range quality,47 spMut,411 tRNAs,260 uniprot,1809 ranked netCe6,276 rate tRNAs,89 rather est,543 intronEst,618 raw spMut,312 uniprot,1708 read est,441 gap,42 gap,132 gold,55 intronEst,516 reads gap,94 gap,113 gold,22 rearrangement chainCe6,540 netCe6,44 netCe6,180 netCe6,478 reasonably est,509 est,532 intronEst,584 intronEst,607 recently uniprot,1186 record spMut,200 uniprot,496 xenoRefGene,67 red spMut,182 reduced intronEst,100 refer spMut,430 uniprot,1827 reference uniprot,1378 uniprot,1422 xenoRefGene,31 xenoRefGene,347 xenoRefGene,369 references augustusGene,285 chainCe6,505 est,714 intronEst,792 microsat,113 mrna,431 netCe6,461 simpleRepeat,73 spMut,462 tRNAs,354 uniprot,1984 windowmaskerSdust,89 xenoMrna,505 xenoRefGene,302 reflect quality,50 refseq spMut,243 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,5 xenoRefGene,34 xenoRefGene,66 xenoRefGene,300 xenoRefGene,342 xenoRefGene,371 regeneron uniprot,1968 region chainCe6,160 netCe6,83 uniprot,312 regions augustusGene,76 chainCe6,94 microsat,14 netCe6,39 simpleRepeat,39 spMut,357 tRNAs,499 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 related augustusGene,242 uniprot,551 relationship est,96 intronEst,171 netCe6,342 relative gap,26 gold,100 netCe6,358 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,160 intronEst,235 mrna,106 uniprot,681 xenoMrna,180 remain uniprot,1189 remaining blastCe6SG,191 chainCe6,412 removed chainCe6,300 uniprot,597 uniprot,1150 rendered tRNAs,346 reorganizing spMut,465 uniprot,1987 repeat chainCe6,442 microsat,83 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeats microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 spMut,10 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive uniprot,1400 represent chainCe6,92 chainCe6,121 est,41 intronEst,52 netCe6,130 netCe6,135 tRNAs,80 representation quality,100 represented gap,17 gap,116 representing gap,60 represents ctgPos2,10 reproducibility uniprot,1645 required tRNAs,217 requiring intronEst,88 res chainCe6,610 est,729 est,749 intronEst,807 intronEst,827 microsat,127 mrna,446 mrna,466 netCe6,523 simpleRepeat,87 spMut,477 tRNAs,383 tRNAs,406 tRNAs,459 tRNAs,502 uniprot,1999 xenoMrna,520 xenoMrna,540 xenoRefGene,310 xenoRefGene,351 xenoRefGene,384 researchers spMut,31 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource spMut,473 spMut,511 uniprot,1995 uniprot,2033 result chainCe6,134 uniprot,798 uniprot,1065 uniprot,1170 resulting chainCe6,323 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,551 intronEst,626 reverse est,426 est,460 est,477 intronEst,501 intronEst,535 intronEst,552 review xenoRefGene,64 reviewed xenoRefGene,74 ribosome tRNAs,157 riestra uniprot,1972 rna est,104 est,420 intronEst,179 intronEst,495 tRNAs,4 tRNAs,375 tRNAs,398 tRNAs,452 xenoRefGene,30 xenoRefGene,242 xenoRefGene,288 rnas xenoRefGene,219 robert chainCe6,500 netCe6,456 tRNAs,351 role uniprot,309 ross chainCe6,440 netCe6,442 rotated tRNAs,327 rough tRNAs,258 run chainCe6,378 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 blastCe6SG,138 chainCe6,535 chainCe6,552 chainCe6,590 netCe6,473 netCe6,490 netCe6,503 spMut,227 tRNAs,479 uniprot,751 uniprot,774 saccharomyces augustusGene,223 same netCe6,209 netCe6,224 tRNAs,247 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 xenoMrna,124 xenoMrna,129 sample augustusGene,133 sampling augustusGene,129 santa chainCe6,475 netCe6,417 scaffold gold,50 gold,71 gold,109 scaffolds gold,33 sch chainCe6,458 chainCe6,568 windowmaskerSdust,94 scheib spMut,490 uniprot,2012 school ctgPos2,42 schwartz chainCe6,431 chainCe6,589 netCe6,433 netCe6,502 sci chainCe6,550 netCe6,488 science spMut,37 scientific spMut,100 uniprot,37 scientists est,712 intronEst,790 mrna,429 xenoMrna,503 xenoRefGene,293 score quality,20 tRNAs,116 tRNAs,121 tRNAs,259 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores quality,2 quality,7 quality,14 quality,53 quality,88 tRNAs,163 tRNAs,178 tRNAs,198 uniprot,1085 scoring chainCe6,35 chainCe6,45 chainCe6,386 chainCe6,403 chainCe6,512 tRNAs,294 scott chainCe6,430 netCe6,432 script spMut,293 uniprot,1549 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 search blastCe6SG,173 tRNAs,62 second xenoMrna,93 secondary tRNAs,76 tRNAs,236 tRNAs,314 tRNAs,323 tRNAs,343 unipStruct,5 uniprot,361 secreted uniprot,247 section uniprot,897 sections netCe6,299 see augustusGene,42 blastCe6SG,159 gold,152 intronEst,118 microsat,101 simpleRepeat,63 spMut,168 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,209 seeking spMut,51 select xenoRefGene,162 selected est,285 est,301 est,354 intronEst,360 intronEst,376 intronEst,429 mrna,231 mrna,247 mrna,300 uniprot,986 xenoMrna,305 xenoMrna,321 xenoMrna,374 selecting microsat,60 semi-markov augustusGene,117 sep chainCe6,555 netCe6,493 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 blastCe6SG,79 chainCe6,128 chainCe6,515 est,21 est,92 est,390 est,399 est,552 est,690 est,702 est,709 gap,93 gold,199 gold,247 gold,271 intronEst,22 intronEst,167 intronEst,465 intronEst,474 intronEst,627 intronEst,765 intronEst,780 intronEst,787 mrna,336 mrna,406 mrna,419 mrna,426 netCe6,48 spMut,210 spMut,513 tRNAs,74 tRNAs,182 tRNAs,380 tRNAs,399 tRNAs,456 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoMrna,79 xenoMrna,103 xenoMrna,111 xenoMrna,410 xenoMrna,480 xenoMrna,493 xenoMrna,500 xenoRefGene,277 xenoRefGene,289 xenoRefGene,370 xenoRefGene,375 sequenced chainCe6,578 ctgPos2,50 gold,148 windowmaskerSdust,104 sequences blastCe6SG,67 est,32 est,571 est,579 intronEst,43 intronEst,646 intronEst,654 microsat,26 microsat,124 simpleRepeat,84 spMut,239 spMut,244 tRNAs,428 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoMrna,116 xenoRefGene,32 xenoRefGene,348 sequencing ctgPos2,6 ctgPos2,32 gap,6 gc5Base,10 gold,7 netCe6,381 quality,5 quality,10 quality,18 server spMut,345 uniprot,1699 uniprot,1745 set blastCe6SG,153 gap,90 gap,99 tRNAs,71 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 sf blastCe6SG,161 shaded est,70 mrna,51 xenoMrna,55 shading intronEst,143 xenoRefGene,59 short uniprot,460 uniprot,978 shotgun gap,78 gap,109 gold,21 gold,140 should est,321 est,604 intronEst,396 intronEst,679 mrna,267 tRNAs,226 xenoMrna,341 show intronEst,31 intronEst,64 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,125 shown est,150 gold,92 intronEst,225 microsat,48 mrna,96 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 xenoMrna,170 shows augustusGene,15 augustusGene,108 chainCe6,17 est,15 gc5Base,16 gold,11 intronEst,16 mrna,16 netCe6,17 quality,16 spMut,78 uniprot,14 uniprot,484 xenoRefGene,14 side est,567 gap,35 intronEst,642 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signs intronEst,32 similar uniprot,1403 simple microsat,57 microsat,85 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainCe6,59 since chainCe6,292 uniprot,1383 sines tRNAs,150 single blastCe6SG,106 chainCe6,86 chainCe6,95 chainCe6,347 chainCe6,353 est,601 est,654 intronEst,676 intronEst,729 mrna,370 spMut,159 uniprot,141 xenoMrna,443 xenoRefGene,241 single-lined chainCe6,169 single-read est,31 intronEst,42 site windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size blastCe6SG,97 gold,172 gold,189 gold,221 gold,237 sizes gap,127 gold,45 skepticism est,609 intronEst,684 sm xenoRefGene,325 smaller gold,201 smit chainCe6,593 netCe6,506 so netCe6,122 tRNAs,277 uniprot,1135 uniprot,1430 some est,158 est,523 est,539 est,642 intronEst,233 intronEst,598 intronEst,614 intronEst,717 mrna,104 uniprot,318 xenoMrna,178 sometimes simpleRepeat,50 uniprot,983 sorted netCe6,268 uniprot,556 source spMut,213 spMut,299 spMut,376 spMut,390 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 space spMut,468 uniprot,1990 spaces gold,90 span netCe6,81 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainCe6,76 chainCe6,131 chainCe6,150 netCe6,387 species-specific augustusGene,156 specific est,197 intronEst,272 mrna,143 simpleRepeat,53 tRNAs,70 tRNAs,233 tRNAs,270 xenoMrna,217 splice augustusGene,53 uniprot,144 spliced intronEst,1 intronEst,9 intronEst,60 splicing augustusGene,123 intronEst,34 intronEst,89 split chainCe6,298 spmut.bb spMut,355 spMut,421 sr tRNAs,395 tRNAs,443 src spMut,305 st ctgPos2,39 staff spMut,105 uniprot,42 uniprot,1965 stage uniprot,1228 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 start augustusGene,58 est,531 intronEst,606 spMut,424 uniprot,125 uniprot,209 uniprot,1821 state chainCe6,425 netCe6,427 statistical augustusGene,47 stdout spMut,428 uniprot,1825 stefanie augustusGene,267 step uniprot,901 uniprot,1155 uniprot,1330 still tRNAs,142 storage chainCe6,493 netCe6,449 stored spMut,333 uniprot,1733 strand chainCe6,205 est,77 intronEst,152 xenoMrna,62 strands uniprot,365 strategy uniprot,1120 uniprot,1193 structural tRNAs,184 structure augustusGene,113 spMut,515 tRNAs,77 tRNAs,237 tRNAs,315 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 tRNAs,324 tRNAs,344 students spMut,35 studies tRNAs,272 studying netCe6,42 subcellular uniprot,553 submitted est,704 intronEst,782 mrna,421 xenoMrna,495 submodel augustusGene,331 subsections chainCe6,368 subset est,136 intronEst,211 microsat,54 mrna,82 xenoMrna,156 substantial chainCe6,127 substitutions spMut,7 subtrack uniprot,411 subtracks uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,561 intronEst,636 such netCe6,348 uniprot,306 suffix uniprot,1255 suitable uniprot,1868 super-contigs ctgPos2,12 supercontig gap,82 gap,96 supercontigs gap,142 gold,38 gold,209 gold,224 gold,235 gold,254 gold,268 supercontigs.agp.gz ctgPos2,27 suppl augustusGene,336 supported gap,40 sure uniprot,1407 swiss-prot spMut,503 uniprot,2025 swissprot spMut,4 spMut,92 spMut,114 unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainCe6,518 syn netCe6,205 syntenic netCe6,355 syntenically augustusGene,297 system chainCe6,36 spMut,386 uniprot,1353 uniprot,1784 systems chainCe6,46 t xenoRefGene,365 t-123-31-11491 chainCe6,401 table augustusGene,225 est,222 est,225 est,244 intronEst,297 intronEst,300 intronEst,319 mrna,168 mrna,171 mrna,190 spMut,320 uniprot,1720 windowmaskerSdust,85 xenoMrna,242 xenoMrna,245 xenoMrna,264 tables uniprot,1301 tags est,22 intronEst,23 tail est,472 intronEst,547 taken est,443 gap,130 intronEst,518 xenoRefGene,26 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 task est,164 intronEst,239 mrna,110 xenoMrna,184 tatusova xenoRefGene,364 tblastn blastCe6SG,10 blastCe6SG,19 blastCe6SG,82 blastCe6SG,145 uniprot,1476 techniques est,537 intronEst,612 temperature augustusGene,141 tend microsat,37 term est,171 intronEst,246 mrna,117 xenoMrna,191 terms est,215 intronEst,290 mrna,161 xenoMrna,235 text est,178 est,218 est,258 intronEst,253 intronEst,293 intronEst,333 mrna,124 mrna,164 mrna,204 uniprot,1763 xenoMrna,198 xenoMrna,238 xenoMrna,278 than blastCe6SG,113 chainCe6,41 est,272 est,544 intronEst,347 intronEst,619 mrna,218 netCe6,194 tRNAs,92 xenoMrna,28 xenoMrna,292 xenoRefGene,23 xenoRefGene,235 thanks augustusGene,248 uniprot,1974 that blastCe6SG,68 blastCe6SG,123 chainCe6,37 chainCe6,99 chainCe6,125 chainCe6,275 chainCe6,288 est,39 est,66 est,120 est,227 est,251 est,288 est,303 est,320 est,344 est,362 est,379 est,394 est,627 est,648 gold,65 intronEst,6 intronEst,30 intronEst,50 intronEst,74 intronEst,195 intronEst,302 intronEst,326 intronEst,363 intronEst,378 intronEst,395 intronEst,419 intronEst,437 intronEst,454 intronEst,469 intronEst,702 intronEst,723 microsat,15 mrna,47 mrna,66 mrna,173 mrna,197 mrna,234 mrna,249 mrna,266 mrna,290 mrna,308 mrna,325 netCe6,80 netCe6,102 netCe6,318 netCe6,329 spMut,222 spMut,338 tRNAs,29 tRNAs,79 tRNAs,186 tRNAs,284 tRNAs,296 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoMrna,51 xenoMrna,140 xenoMrna,247 xenoMrna,271 xenoMrna,308 xenoMrna,323 xenoMrna,340 xenoMrna,364 xenoMrna,382 xenoMrna,399 xenoRefGene,148 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 blastCe6SG,22 blastCe6SG,25 blastCe6SG,38 blastCe6SG,42 blastCe6SG,51 blastCe6SG,56 blastCe6SG,64 blastCe6SG,76 blastCe6SG,81 blastCe6SG,85 blastCe6SG,105 blastCe6SG,116 blastCe6SG,128 blastCe6SG,136 blastCe6SG,149 blastCe6SG,190 chainCe6,28 chainCe6,77 chainCe6,90 chainCe6,107 chainCe6,115 chainCe6,162 chainCe6,166 chainCe6,192 chainCe6,198 chainCe6,203 chainCe6,211 chainCe6,223 chainCe6,238 chainCe6,244 chainCe6,247 chainCe6,262 chainCe6,268 chainCe6,272 chainCe6,293 chainCe6,302 chainCe6,304 chainCe6,315 chainCe6,322 chainCe6,331 chainCe6,334 chainCe6,366 chainCe6,371 chainCe6,380 chainCe6,384 chainCe6,391 chainCe6,411 chainCe6,447 chainCe6,464 chainCe6,470 chainCe6,488 chainCe6,495 chainCe6,542 ctgPos2,11 ctgPos2,16 ctgPos2,20 ctgPos2,25 ctgPos2,30 ctgPos2,35 est,27 est,53 est,64 est,76 est,80 est,83 est,86 est,89 est,98 est,103 est,111 est,126 est,130 est,140 est,152 est,162 est,167 est,177 est,182 est,189 est,200 est,203 est,206 est,211 est,221 est,224 est,230 est,240 est,247 est,256 est,266 est,276 est,308 est,315 est,329 est,338 est,346 est,355 est,364 est,381 est,388 est,397 est,408 est,431 est,445 est,459 est,470 est,476 est,486 est,490 est,501 est,505 est,512 est,521 est,525 est,535 est,555 est,581 est,587 est,622 est,628 est,660 est,663 est,679 est,688 est,706 est,744 gap,13 gap,25 gap,31 gap,37 gap,57 gap,61 gap,66 gap,75 gap,106 gap,123 gap,145 gc5Base,12 gc5Base,17 gc5Base,53 gc5Base,57 gc5Base,68 gc5Base,72 gold,12 gold,16 gold,40 gold,63 gold,68 gold,77 gold,94 gold,99 gold,105 gold,119 gold,124 gold,144 gold,163 gold,170 gold,198 gold,200 gold,219 gold,246 gold,248 gold,253 gold,278 intronEst,28 intronEst,38 intronEst,90 intronEst,95 intronEst,102 intronEst,119 intronEst,131 intronEst,151 intronEst,155 intronEst,158 intronEst,161 intronEst,164 intronEst,173 intronEst,178 intronEst,186 intronEst,201 intronEst,205 intronEst,215 intronEst,227 intronEst,237 intronEst,242 intronEst,252 intronEst,257 intronEst,264 intronEst,275 intronEst,278 intronEst,281 intronEst,286 intronEst,296 intronEst,299 intronEst,305 intronEst,315 intronEst,322 intronEst,331 intronEst,341 intronEst,351 intronEst,383 intronEst,390 intronEst,404 intronEst,413 intronEst,421 intronEst,430 intronEst,439 intronEst,456 intronEst,463 intronEst,472 intronEst,483 intronEst,506 intronEst,520 intronEst,534 intronEst,545 intronEst,551 intronEst,561 intronEst,565 intronEst,576 intronEst,580 intronEst,587 intronEst,596 intronEst,600 intronEst,610 intronEst,630 intronEst,656 intronEst,662 intronEst,697 intronEst,703 intronEst,735 intronEst,738 intronEst,754 intronEst,763 intronEst,784 intronEst,822 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,13 mrna,25 mrna,34 mrna,45 mrna,57 mrna,72 mrna,76 mrna,86 mrna,98 mrna,108 mrna,113 mrna,123 mrna,128 mrna,135 mrna,146 mrna,149 mrna,152 mrna,157 mrna,167 mrna,170 mrna,176 mrna,186 mrna,193 mrna,202 mrna,212 mrna,222 mrna,254 mrna,261 mrna,275 mrna,284 mrna,292 mrna,301 mrna,310 mrna,327 mrna,334 mrna,345 mrna,362 mrna,365 mrna,376 mrna,379 mrna,395 mrna,404 mrna,410 mrna,423 mrna,461 netCe6,18 netCe6,29 netCe6,45 netCe6,55 netCe6,70 netCe6,76 netCe6,90 netCe6,108 netCe6,125 netCe6,128 netCe6,133 netCe6,146 netCe6,159 netCe6,161 netCe6,168 netCe6,171 netCe6,178 netCe6,184 netCe6,197 netCe6,208 netCe6,212 netCe6,215 netCe6,223 netCe6,227 netCe6,233 netCe6,244 netCe6,247 netCe6,258 netCe6,262 netCe6,270 netCe6,274 netCe6,278 netCe6,286 netCe6,331 netCe6,341 netCe6,360 netCe6,363 netCe6,375 netCe6,399 netCe6,404 netCe6,413 netCe6,444 netCe6,451 netCe6,480 quality,12 quality,17 quality,25 quality,27 quality,33 quality,36 quality,39 quality,48 quality,51 quality,69 quality,73 quality,82 quality,86 quality,94 quality,98 simpleRepeat,60 spMut,41 spMut,48 spMut,79 spMut,90 spMut,94 spMut,103 spMut,119 spMut,130 spMut,149 spMut,169 spMut,191 spMut,197 spMut,211 spMut,218 spMut,225 spMut,234 spMut,260 spMut,264 spMut,270 spMut,273 spMut,276 spMut,285 spMut,291 spMut,297 spMut,311 spMut,319 spMut,323 spMut,329 spMut,343 spMut,346 spMut,359 spMut,375 spMut,398 spMut,466 spMut,470 spMut,502 spMut,507 tRNAs,52 tRNAs,114 tRNAs,139 tRNAs,156 tRNAs,204 tRNAs,216 tRNAs,246 tRNAs,317 tRNAs,321 tRNAs,336 tRNAs,363 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoMrna,38 xenoMrna,49 xenoMrna,61 xenoMrna,71 xenoMrna,74 xenoMrna,77 xenoMrna,84 xenoMrna,92 xenoMrna,96 xenoMrna,99 xenoMrna,105 xenoMrna,123 xenoMrna,128 xenoMrna,131 xenoMrna,146 xenoMrna,150 xenoMrna,160 xenoMrna,172 xenoMrna,182 xenoMrna,187 xenoMrna,197 xenoMrna,202 xenoMrna,209 xenoMrna,220 xenoMrna,223 xenoMrna,226 xenoMrna,231 xenoMrna,241 xenoMrna,244 xenoMrna,250 xenoMrna,260 xenoMrna,267 xenoMrna,276 xenoMrna,286 xenoMrna,296 xenoMrna,328 xenoMrna,335 xenoMrna,349 xenoMrna,358 xenoMrna,366 xenoMrna,375 xenoMrna,384 xenoMrna,401 xenoMrna,408 xenoMrna,419 xenoMrna,429 xenoMrna,434 xenoMrna,449 xenoMrna,452 xenoMrna,469 xenoMrna,478 xenoMrna,484 xenoMrna,497 xenoMrna,535 xenoRefGene,28 xenoRefGene,35 xenoRefGene,50 xenoRefGene,57 xenoRefGene,61 xenoRefGene,65 xenoRefGene,76 xenoRefGene,91 xenoRefGene,94 xenoRefGene,97 xenoRefGene,111 xenoRefGene,117 xenoRefGene,122 xenoRefGene,127 xenoRefGene,135 xenoRefGene,163 xenoRefGene,168 xenoRefGene,183 xenoRefGene,198 xenoRefGene,211 xenoRefGene,218 xenoRefGene,223 xenoRefGene,247 xenoRefGene,250 xenoRefGene,266 xenoRefGene,275 xenoRefGene,298 their uniprot,62 uniprot,723 uniprot,1101 them netCe6,293 tRNAs,280 uniprot,20 uniprot,173 uniprot,483 then chainCe6,318 chainCe6,377 netCe6,282 netCe6,367 spMut,248 spMut,267 tRNAs,54 uniprot,1083 uniprot,1516 there est,590 gold,157 intronEst,665 spMut,140 uniprot,705 uniprot,1092 xenoMrna,117 therefore gold,113 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainCe6,60 chainCe6,389 est,558 gap,114 gold,174 gold,223 gold,267 intronEst,633 microsat,24 netCe6,95 simpleRepeat,33 tRNAs,56 tRNAs,223 tRNAs,257 tRNAs,303 tRNAs,359 uniprot,99 uniprot,130 uniprot,1160 they chainCe6,234 tRNAs,188 tRNAs,267 uniprot,179 thibaud-nissen xenoRefGene,326 this augustusGene,13 augustusGene,106 augustusGene,224 blastCe6SG,16 blastCe6SG,196 chainCe6,15 chainCe6,132 chainCe6,417 ctgPos2,8 ctgPos2,46 est,13 est,50 est,115 est,142 est,367 est,404 est,563 est,599 est,612 est,694 gap,8 gap,22 gap,63 gap,84 gc5Base,38 gc5Base,77 gold,9 gold,60 gold,129 gold,269 intronEst,14 intronEst,128 intronEst,190 intronEst,217 intronEst,442 intronEst,479 intronEst,638 intronEst,674 intronEst,687 intronEst,769 intronEst,772 microsat,11 microsat,50 microsat,99 mrna,31 mrna,61 mrna,88 mrna,313 mrna,341 netCe6,15 netCe6,51 netCe6,82 netCe6,308 quality,54 simpleRepeat,12 simpleRepeat,31 spMut,13 spMut,76 spMut,146 spMut,279 spMut,351 spMut,447 tRNAs,14 tRNAs,134 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoMrna,12 xenoMrna,35 xenoMrna,65 xenoMrna,135 xenoMrna,162 xenoMrna,387 xenoMrna,415 xenoRefGene,12 xenoRefGene,38 xenoRefGene,47 xenoRefGene,85 xenoRefGene,140 xenoRefGene,179 xenoRefGene,215 xenoRefGene,281 those est,360 est,393 intronEst,435 intronEst,468 microsat,62 mrna,306 tRNAs,176 uniprot,729 xenoMrna,380 xenoMrna,459 xenoRefGene,229 thousands chainCe6,209 three uniprot,1227 three-step uniprot,989 threshold chainCe6,406 through gap,56 gold,212 spMut,272 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,90 time netCe6,291 tissue est,207 est,242 est,257 intronEst,282 intronEst,317 intronEst,332 mrna,153 mrna,188 mrna,203 xenoMrna,227 xenoMrna,262 xenoMrna,277 tissues est,250 intronEst,325 mrna,196 xenoMrna,270 tm tRNAs,369 tRNAs,441 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 blastCe6SG,50 blastCe6SG,59 blastCe6SG,194 chainCe6,27 chainCe6,103 chainCe6,174 chainCe6,186 chainCe6,225 chainCe6,236 chainCe6,241 chainCe6,253 chainCe6,259 chainCe6,282 chainCe6,382 ctgPos2,51 est,97 est,124 est,161 est,165 est,180 est,187 est,191 est,209 est,229 est,236 est,324 est,373 est,383 est,407 est,416 est,485 est,550 est,610 est,705 gap,143 gc5Base,48 gold,122 gold,149 intronEst,57 intronEst,172 intronEst,199 intronEst,236 intronEst,240 intronEst,255 intronEst,262 intronEst,266 intronEst,284 intronEst,304 intronEst,311 intronEst,399 intronEst,448 intronEst,458 intronEst,482 intronEst,491 intronEst,560 intronEst,625 intronEst,685 intronEst,783 microsat,18 microsat,38 microsat,121 mrna,70 mrna,107 mrna,111 mrna,126 mrna,133 mrna,137 mrna,155 mrna,175 mrna,182 mrna,270 mrna,319 mrna,329 mrna,344 mrna,422 netCe6,141 netCe6,155 netCe6,239 netCe6,284 netCe6,296 netCe6,336 netCe6,359 netCe6,369 quality,44 quality,64 simpleRepeat,81 spMut,47 spMut,62 spMut,73 spMut,156 spMut,167 spMut,242 spMut,250 spMut,269 spMut,404 spMut,431 tRNAs,44 tRNAs,66 tRNAs,127 tRNAs,170 tRNAs,219 tRNAs,251 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoMrna,89 xenoMrna,144 xenoMrna,181 xenoMrna,185 xenoMrna,200 xenoMrna,207 xenoMrna,211 xenoMrna,229 xenoMrna,249 xenoMrna,256 xenoMrna,344 xenoMrna,393 xenoMrna,403 xenoMrna,418 xenoMrna,496 xenoRefGene,115 xenoRefGene,151 xenoRefGene,158 xenoRefGene,182 xenoRefGene,208 together blastCe6SG,92 chainCe6,83 gold,255 tolerate chainCe6,50 tolerated uniprot,1257 tool blastCe6SG,152 blastCe6SG,174 est,747 intronEst,825 mrna,464 spMut,368 spMut,399 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoMrna,538 xenoRefGene,308 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools uniprot,1873 top netCe6,196 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,95 top-level netCe6,71 netCe6,91 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 blastCe6SG,17 blastCe6SG,47 blastCe6SG,197 chainCe6,16 chainCe6,79 chainCe6,255 chainCe6,418 ctgPos2,9 est,14 est,51 est,116 est,141 est,153 est,368 est,613 est,695 gap,9 gap,23 gc5Base,15 gc5Base,39 gold,10 gold,61 gold,130 intronEst,15 intronEst,123 intronEst,129 intronEst,191 intronEst,216 intronEst,228 intronEst,443 intronEst,688 intronEst,770 intronEst,773 microsat,12 microsat,51 microsat,59 microsat,87 mrna,15 mrna,32 mrna,62 mrna,87 mrna,99 mrna,314 mrna,412 netCe6,16 quality,15 quality,34 quality,55 simpleRepeat,13 spMut,14 spMut,77 spMut,352 spMut,448 tRNAs,15 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoMrna,13 xenoMrna,36 xenoMrna,66 xenoMrna,136 xenoMrna,161 xenoMrna,173 xenoMrna,388 xenoMrna,486 xenoRefGene,13 xenoRefGene,39 xenoRefGene,48 xenoRefGene,86 xenoRefGene,98 xenoRefGene,141 xenoRefGene,170 xenoRefGene,282 tracks augustusGene,41 est,59 est,413 intronEst,137 intronEst,488 mrna,40 mrna,352 netCe6,264 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoMrna,44 xenoMrna,426 xenoRefGene,56 traditional chainCe6,42 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,44 est,427 intronEst,55 intronEst,502 transcript est,522 intronEst,597 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,478 intronEst,553 transcription est,101 est,461 est,508 est,530 intronEst,176 intronEst,536 intronEst,583 intronEst,605 transcriptional tRNAs,497 transcripts augustusGene,124 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,379 transfer tRNAs,3 tRNAs,374 tRNAs,451 translated xenoMrna,15 xenoMrna,81 xenoMrna,101 xenoMrna,439 translation augustusGene,57 tRNAs,159 tRNAs,195 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposons chainCe6,287 chainCe6,316 netCe6,394 treat tRNAs,279 tree spMut,300 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming netCe6,292 trna tRNAs,1 tRNAs,17 tRNAs,50 tRNAs,98 tRNAs,109 tRNAs,132 tRNAs,140 tRNAs,146 tRNAs,173 tRNAs,275 tRNAs,285 tRNAs,313 tRNAs,342 tRNAs,423 tRNAs,484 trna-derived tRNAs,149 tRNAs,301 trnas tRNAs,84 tRNAs,161 tRNAs,196 tRNAs,225 trnascan tRNAs,31 trnascan-se tRNAs,8 tRNAs,22 tRNAs,24 tRNAs,115 tRNAs,330 tRNAs,444 true augustusGene,132 tRNAs,83 windowmaskerSdust,60 windowmaskerSdust,69 turn chainCe6,242 xenoRefGene,133 turns uniprot,370 two netCe6,400 uniprot,71 uniprot,630 uniprot,1641 xenoMrna,69 xenoMrna,106 type est,169 est,199 gold,134 intronEst,244 intronEst,274 mrna,115 mrna,145 uniprot,65 uniprot,271 uniprot,464 uniprot,614 xenoMrna,189 xenoMrna,219 types augustusGene,89 est,248 gap,69 intronEst,323 mrna,194 netCe6,192 uniprot,676 xenoMrna,268 typical tRNAs,311 typically est,33 est,430 gc5Base,33 intronEst,44 intronEst,505 u chainCe6,551 netCe6,489 ucsc blastCe6SG,34 est,699 gold,249 intronEst,777 mrna,416 tRNAs,340 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoMrna,490 xenoRefGene,286 undergone xenoRefGene,69 underlying spMut,347 uniprot,1682 xenoRefGene,37 underneath netCe6,328 unexpected uniprot,766 ungapped netCe6,131 uniprot spMut,1 spMut,3 spMut,91 spMut,104 spMut,113 spMut,162 spMut,170 spMut,193 spMut,199 spMut,235 spMut,238 spMut,255 spMut,261 spMut,420 spMut,463 spMut,474 unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 uniprotmutations spMut,308 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique uniprot,1600 universal spMut,471 uniprot,1993 university chainCe6,426 chainCe6,471 ctgPos2,37 netCe6,414 netCe6,428 unprocessed chainCe6,189 est,573 intronEst,648 unsequenced chainCe6,146 unspliced est,8 est,602 intronEst,117 intronEst,677 up blastCe6SG,70 gold,67 update est,726 intronEst,804 mrna,443 xenoMrna,517 xenoRefGene,344 updated uniprot,1566 xenoRefGene,41 urged spMut,61 us uniprot,687 uniprot,1441 use est,166 gold,78 intronEst,241 mrna,112 spMut,18 tRNAs,357 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 xenoMrna,186 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 blastCe6SG,193 chainCe6,395 est,123 est,264 est,323 est,541 intronEst,198 intronEst,339 intronEst,398 intronEst,616 mrna,69 mrna,210 mrna,269 netCe6,49 netCe6,283 netCe6,335 netCe6,368 spMut,138 spMut,230 spMut,403 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 xenoMrna,143 xenoMrna,284 xenoMrna,343 useful microsat,20 netCe6,35 netCe6,165 user est,382 intronEst,457 mrna,328 xenoMrna,402 users spMut,50 uniprot,406 uniprot,684 xenoRefGene,150 uses tRNAs,30 using augustusGene,294 blastCe6SG,55 blastCe6SG,80 blastCe6SG,93 chainCe6,32 chainCe6,311 chainCe6,330 est,624 gap,111 intronEst,699 microsat,90 mrna,364 netCe6,257 spMut,275 spMut,366 tRNAs,21 tRNAs,401 uniprot,217 uniprot,722 uniprot,1526 xenoMrna,438 xenoRefGene,227 ustat windowmaskerSdust,66 usually est,40 gap,129 intronEst,51 tRNAs,239 tRNAs,307 utilities blastCe6SG,192 utils spMut,307 v.1.23 tRNAs,23 v3.1 augustusGene,7 valid est,214 intronEst,289 mrna,160 xenoMrna,234 validate xenoRefGene,153 value est,274 intronEst,349 mrna,220 xenoMrna,294 variant spMut,189 spMut,194 spMut,226 spMut,504 uniprot,2026 variants spMut,2 spMut,88 spMut,115 spMut,179 spMut,205 spMut,256 spMut,265 spMut,520 uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 simpleRepeat,8 spMut,8 uniprot,438 windowmaskerSdust,9 variety gc5Base,45 quality,61 various uniprot,50 varying gap,118 vb chainCe6,509 vector est,438 intronEst,513 version augustusGene,23 augustusGene,263 blastCe6SG,32 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 uniprot,1655 vertebrate tRNAs,160 xenoMrna,19 vertebrates augustusGene,209 very est,645 intronEst,720 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via uniprot,1293 view est,210 intronEst,285 mrna,156 netCe6,142 xenoMrna,230 viewed est,606 gold,70 intronEst,681 visible uniprot,147 w blastCe6SG,163 blastCe6SG,165 chainCe6,511 chainCe6,531 chainCe6,604 gold,136 netCe6,469 netCe6,517 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 blastCe6SG,185 chainCe6,376 chainCe6,394 chainCe6,421 chainCe6,467 ctgPos2,49 est,667 est,696 intronEst,742 intronEst,774 microsat,108 mrna,383 mrna,413 netCe6,281 netCe6,326 netCe6,334 netCe6,354 netCe6,366 netCe6,391 netCe6,423 simpleRepeat,68 spMut,449 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoMrna,456 xenoMrna,487 xenoRefGene,254 xenoRefGene,283 washington ctgPos2,36 way uniprot,1459 ways gc5Base,47 quality,63 we chainCe6,444 uniprot,1224 uniprot,1453 uniprot,1859 webb chainCe6,435 chainCe6,483 netCe6,437 weekly xenoRefGene,42 weight tRNAs,493 well augustusGene,78 est,510 est,533 intronEst,585 intronEst,608 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 blastCe6SG,48 blastCe6SG,73 blastCe6SG,90 blastCe6SG,119 blastCe6SG,141 blastCe6SG,198 chainCe6,299 chainCe6,307 chainCe6,317 chainCe6,325 chainCe6,337 chainCe6,409 chainCe6,497 ctgPos2,22 est,560 est,619 est,691 gc5Base,79 gold,23 gold,30 intronEst,635 intronEst,694 mrna,359 mrna,407 netCe6,252 netCe6,410 netCe6,453 quality,89 quality,105 spMut,229 spMut,240 spMut,257 spMut,266 tRNAs,345 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoMrna,431 xenoMrna,481 xenoRefGene,220 xenoRefGene,237 xenoRefGene,278 wget uniprot,1903 uniprot,1913 what tRNAs,112 wheeler est,723 intronEst,801 mrna,440 xenoMrna,514 when augustusGene,188 augustusGene,238 est,146 est,156 est,652 gold,27 intronEst,35 intronEst,221 intronEst,231 intronEst,727 mrna,92 mrna,102 mrna,368 netCe6,93 quality,41 tRNAs,355 uniprot,951 uniprot,1202 uniprot,1632 xenoMrna,166 xenoMrna,176 xenoMrna,441 xenoRefGene,239 where chainCe6,153 gold,85 uniprot,1192 whether netCe6,350 tRNAs,138 which augustusGene,159 augustusGene,227 chainCe6,232 chainCe6,341 est,106 est,233 est,467 est,492 est,639 intronEst,181 intronEst,308 intronEst,542 intronEst,567 intronEst,714 mrna,179 netCe6,315 simpleRepeat,27 spMut,370 uniprot,158 uniprot,1380 uniprot,1768 xenoMrna,253 while chainCe6,177 spMut,40 white gap,52 whole gap,76 gap,107 gold,138 netCe6,150 spMut,360 whole-genome gold,20 whose xenoMrna,80 wildcards est,260 intronEst,335 mrna,206 xenoMrna,280 will est,293 est,311 est,340 est,357 intronEst,368 intronEst,386 intronEst,415 intronEst,432 mrna,239 mrna,257 mrna,286 mrna,303 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 xenoMrna,313 xenoMrna,331 xenoMrna,360 xenoMrna,377 window-based chainCe6,575 windowmaskerSdust,101 windowmasker chainCe6,450 chainCe6,574 windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5Base,7 gc5Base,28 wish est,235 intronEst,310 mrna,181 xenoMrna,255 xenoRefGene,207 with augustusGene,127 augustusGene,322 blastCe6SG,75 chainCe6,168 chainCe6,179 chainCe6,309 chainCe6,437 chainCe6,449 chainCe6,480 chainCe6,607 est,105 est,469 est,607 est,644 est,687 gc5Base,35 gold,180 gold,229 gold,261 gold,277 intronEst,180 intronEst,544 intronEst,682 intronEst,719 intronEst,762 microsat,69 microsat,76 mrna,403 netCe6,269 netCe6,393 netCe6,439 netCe6,520 simpleRepeat,52 spMut,26 spMut,64 spMut,118 spMut,246 spMut,253 spMut,318 spMut,454 tRNAs,7 tRNAs,58 tRNAs,85 tRNAs,119 tRNAs,162 tRNAs,177 tRNAs,197 tRNAs,242 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoMrna,477 xenoRefGene,230 xenoRefGene,274 within est,139 est,520 est,676 gold,48 gold,107 gold,128 intronEst,214 intronEst,595 intronEst,751 mrna,85 mrna,392 simpleRepeat,37 spMut,408 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoMrna,159 xenoMrna,466 xenoRefGene,84 xenoRefGene,263 without uniprot,139 wj chainCe6,525 chainCe6,592 est,742 intronEst,820 mrna,459 netCe6,463 netCe6,505 xenoMrna,533 xenoRefGene,304 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide est,713 intronEst,791 mrna,430 xenoMrna,504 xenoRefGene,294 wormbase blastCe6SG,26 blastCe6SG,45 written blastCe6SG,186 blastCe6SG,199 microsat,109 quality,106 simpleRepeat,69 ws190 blastCe6SG,6 blastCe6SG,33 chainCe6,8 chainCe6,25 netCe6,8 netCe6,58 wustl ctgPos2,41 ctgPos2,55 gold,154 x uniprot,1923 xml spMut,262 uniprot,1510 yap chainCe6,508 years uniprot,933 yip spMut,488 uniprot,2010 yl spMut,489 uniprot,2011 you est,234 intronEst,309 mrna,180 uniprot,655 uniprot,689 uniprot,1443 xenoMrna,254 xenoRefGene,206 your spMut,385 uniprot,1783 z chainCe6,596 netCe6,509 zebrafish augustusGene,202 augustusGene,278 zhang chainCe6,433 chainCe6,595 netCe6,435 netCe6,508 zheng chainCe6,432 netCe6,434 zinc uniprot,326 zone tRNAs,208 zoomed quality,42